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Aliases for CH17-340M24.3 Gene

Subcategory (RNA class) for CH17-340M24.3 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for CH17-340M24.3 Gene

  • Uncharacterized Protein BC009467 3 5

External Ids for CH17-340M24.3 Gene

Summaries for CH17-340M24.3 Gene

GeneCards Summary for CH17-340M24.3 Gene

CH17-340M24.3 (Uncharacterized Protein BC009467) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for CH17-340M24.3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CH17-340M24.3 Gene

Genomics for CH17-340M24.3 Gene

Regulatory Elements for CH17-340M24.3 Gene

Enhancers for CH17-340M24.3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH154483 1 ENCODE 12.2 -57.4 -57356 3 PKNOX1 ATF1 ARNT SIN3A ZBTB7B ZNF766 GLIS2 ELK1 FOS ATF7 FAM3A FAM50A GDI1 CH17-340M24.3 ATP6AP1 UBL4A GC0XM154482
GH0XH154325 0.8 Ensembl ENCODE 11.7 +101.5 101499 1 OSR2 E2F1 GATA3 SCRT2 ZNF600 TRIM28 PLXNA3 CH17-340M24.3 ATP6AP1 GDI1 FAM50A DNASE1L1 GC0XP154343 GC0XP154344 PIR36226 TEX28
GH0XH154364 1.6 VISTA ENCODE dbSUPER 4 +58.3 58290 10 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 FOS SP3 PLXNA3 EMD FLNA FAM50A HCFC1 DKC1 CH17-340M24.3 GC0XM154352 GC0XM154351
GH0XH154376 1.3 ENCODE dbSUPER 4 +49.3 49335 5 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A BRCA1 GLIS2 ZNF207 ATF7 PLXNA3 DKC1 HCFC1 SNORA70 EMD SLC10A3 SNORA56 TMEM187 RPL10 CH17-340M24.3
GH0XH154505 0.4 ENCODE 12.2 -77.6 -77602 1 ZIC2 MAFK FAM3A IKBKG G6PD LAGE3 FAM50A GDI1 ATP6AP1 CH17-340M24.3 RENBP GC0XM154496
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CH17-340M24.3 on UCSC Golden Path with GeneCards custom track

Promoters for CH17-340M24.3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000249673 -321 2001 PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF121 GLIS2 ATF7

Genomic Location for CH17-340M24.3 Gene

Chromosome:
X
Start:
154,424,380 bp from pter
End:
154,428,479 bp from pter
Size:
4,100 bases
Orientation:
Minus strand

Genomic View for CH17-340M24.3 Gene

Genes around CH17-340M24.3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CH17-340M24.3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CH17-340M24.3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CH17-340M24.3 Gene

Proteins for CH17-340M24.3 Gene

Post-translational modifications for CH17-340M24.3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CH17-340M24.3 Gene

Domains & Families for CH17-340M24.3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CH17-340M24.3 Gene

Function for CH17-340M24.3 Gene

Phenotypes From GWAS Catalog for CH17-340M24.3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CH17-340M24.3 Gene

Localization for CH17-340M24.3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CH17-340M24.3 Gene

Pathways & Interactions for CH17-340M24.3 Gene

SuperPathways for CH17-340M24.3 Gene

No Data Available

Interacting Proteins for CH17-340M24.3 Gene

Gene Ontology (GO) - Biological Process for CH17-340M24.3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CH17-340M24.3 Gene

Drugs & Compounds for CH17-340M24.3 Gene

No Compound Related Data Available

Transcripts for CH17-340M24.3 Gene

mRNA/cDNA for CH17-340M24.3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CH17-340M24.3 Gene

No ASD Table

Relevant External Links for CH17-340M24.3 Gene

GeneLoc Exon Structure for
CH17-340M24.3

Expression for CH17-340M24.3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CH17-340M24.3 Gene

Orthologs for CH17-340M24.3 Gene

Evolution for CH17-340M24.3 Gene

ENSEMBL:
Gene Tree for CH17-340M24.3 (if available)
TreeFam:
Gene Tree for CH17-340M24.3 (if available)

No data available for Orthologs for CH17-340M24.3 Gene

Paralogs for CH17-340M24.3 Gene

No data available for Paralogs for CH17-340M24.3 Gene

Variants for CH17-340M24.3 Gene

Sequence variations from dbSNP and Humsavar for CH17-340M24.3 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1001440437 -- 154,426,943(+) GCTCA(C/T)TGGTG intron-variant, upstream-variant-2KB
rs1001808310 -- 154,425,605(+) CAACA(A/G)GAGCC intron-variant
rs1002359264 -- 154,428,660(+) CGGCT(G/T)TCGAG upstream-variant-2KB, utr-variant-5-prime
rs1002852664 -- 154,428,994(+) GACAG(A/C)GCTCC intron-variant, upstream-variant-2KB
rs1003522172 -- 154,423,884(+) GCTTT(A/C)GTTTG downstream-variant-500B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for CH17-340M24.3 Gene

Disorders for CH17-340M24.3 Gene

Relevant External Links for CH17-340M24.3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CH17-340M24.3

No disorders were found for CH17-340M24.3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CH17-340M24.3 Gene

Publications for CH17-340M24.3 Gene

No publications were found for CH17-340M24.3 Gene.

Products for CH17-340M24.3 Gene

Sources for CH17-340M24.3 Gene

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