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Aliases & Descriptions for CGA
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CG-ALPHA 2 | | CG-alpha 3 | | FSH-alpha 3 | | FSHA 1, 2 | | GPHA1 1, 2 | | GPHa 1, 2 | | HCG 1, 2 | | LHA 1, 2 | | LSH-alpha 3 | | OTTHUMP00000016825 2 | | TSH-alpha 3 | | TSHA 1, 2 |
| | | Descriptions |
|---|
Anterior pituitary glycoprotein hormones common subunit alpha 3 | | Choriogonadotropin alpha chain 3 | | Chorionic gonadotrophin subunit alpha 3 | | Follicle-stimulating hormone alpha chain 3 | | Follitropin alpha chain 3 | | Luteinizing hormone alpha chain 3 | | Lutropin alpha chain 3 | | Thyroid-stimulating hormone alpha chain 3 | | Thyrotropin alpha chain 3 | | chorionic gonadotropin, alpha polypeptide 2 | | follicle-stimulating hormone alpha subunit 2 | | glycoprotein hormones, alpha polypeptide 2 |
|
| | Search outside databases for aliases for CGA genePrevious GC identifers: GC06M087741 GC06M087790 |
Summaries for CGA(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CGA: The four human glycoprotein hormones chorionic gonadotropin (CG), luteinizing hormone (LH), follicle stimulating hormone (FSH), and thyroid stimulating hormone (TSH) are dimers consisting of alpha and beta subunits that are associated noncovalently. The alpha subunits of these hormones are identical, however, their beta chains are unique and confer biological specificity. The protein encoded by this gene is the alpha subunit and belongs to the glycoprotein hormones alpha chain family. [provided by RefSeq] Gene Wiki entry for CGA (Chorionic_gonadotropin_alpha) |
Genomic Location for CGA
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CGA gene 
Entrez Gene cytogenetic band: 6q12-q21 Ensembl cytogenetic band: 6q15 HGNC cytogenetic band: 6q14-q21CGA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M087851:
(about GC identifiers)
Start:
|
87,851,935 bp from pter |
End:
|
87,861,569 bp from pter |
Size:
|
9,635 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007299.12
| Proteins for CGA
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GLHA_HUMAN, P01215 (See
protein sequence)Recommended Name: Glycoprotein hormones alpha chain precursor Size: 116 amino acids; 13075 Da
Subunit: Heterodimer of a common alpha chain and a unique beta chain which confers biological specificity to thyrotropin, lutropin, follitropin and gonadotropin
Subcellular location: Secreted
PDB structures from and Proteopedia :1DZ7 (3D)
 1E9J (3D)
 1FL7 (3D)
 1HCN (3D)
 1HD4 (3D)
 1HRP (3D)
 1QFW (3D)
 1XUL (3D)
 1XWD (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000726.1
ENSEMBL proteins: ENSP00000358595
Human Recombinant Proteins  | Browse
Drug Discovery Central at Invitrogen for human recombinant proteins |  | Browse Purified and Recombinant Proteins at Millipore |  | Sigma-Aldrich Proteins for CGA  |  |
Browse R&D Systems for human recombinant proteins |  | Browse recombinant and purified proteins available from Enzo Life Sciences |  | Recombinant Proteins from Abcam (hCG alpha 2, hCG alpha, TSH, hCG alpha 6, hCG alpha 3, Glycoprotein hormones (alpha 5), Luteinizing Hormone alpha, FSH, hCG alpha 4, TSH alpha , hCG alpha + beta) |  | Human Recombinant Proteins from Abnova (CGA) | Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CGA:  | Browse
Antibodies Central at Invitrogen |  | Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies |  | Sigma-Aldrich Antibodies for CGA |  | R&D Systems Antibodies for CGA (alpha HCG) |  | Antibodies from Abcam (hCG alpha 2, hCG alpha, TSH, hCG alpha 6, hCG alpha 3, Glycoprotein hormones (alpha 5), FSH, Luteinizing Hormone alpha, hCG alpha 4, TSH alpha , hCG alpha + beta), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (CGA) |  | Novus Biologicals Antibodies for CGA |
Assays for CGA: | Protein
Domains/ Families for CGA(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P01215
ProtoNet protein and cluster: P01215 2 Blocks protein families: IPB000476 Glycoprotein hormones alpha chain IPB002400 Growth factor cystine knot superfamily signature
UniProtKB/Swiss-Prot: GLHA_HUMAN, P01215Similarity: Belongs to the glycoprotein hormones subunit alpha family | Gene Function for CGA
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000735
Applied Biosystems Silencer® siRNAs for CGA
Sigma-Aldrich siRNA for CGA  Sigma-Aldrich shRNA for CGA  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000735                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000735                                  untagged cDNA clone in CMV expression vector: NM_000735 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000735
Genatlas biochemistry entry for CGA:glycoprotein hormones,alpha polypeptide,common to chorionic gonadotropin,FSH,LH,TSH5 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Cga):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for CGA
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for CGA (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CGA 
5/72 Interacting proteins for CGA (P012152 ENSP000003585953) via UniProtKB, MINT, and/or STRING (see all 72
)About this table
5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
): About this table
|
Drugs & Compounds for CGA(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CGA 10/38 Novoseek chemical compound relationships for CGA gene (see all 38
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| oestriol |
86.83 |
82 |
9512261 (3), 1494541 (2), 1836960 (2), 8624312 (2) (see all 66) |
| progesterone |
86.57 |
908 |
1761656 (6), 10997481 (6), 1379268 (6), 18492365 (6) (see all 99) |
| estradiol |
80.24 |
268 |
11497290 (6), 7951553 (4), 17031874 (4), 7819706 (3) (see all 99) |
| 17alpha,20beta,21-trihydroxy-4-pregnen-3-one |
68.40 |
2 |
11825028 (1), 2354768 (1) |
| androstenedione |
66.59 |
26 |
12812264 (2), 10726907 (2), 1561629 (2), 1388313 (1) (see all 20) |
| 3beta-hydroxysteroid |
63.79 |
13 |
11098016 (1), 1402535 (1), 8714008 (1), 17412805 (1) (see all 11) |
| 17-hydroxyprogesterone |
60.30 |
25 |
9262268 (4), 16580856 (2), 1561629 (2), 10717816 (1) (see all 16) |
| steroid |
58.97 |
79 |
10611255 (3), 10499535 (2), 11825028 (2), 12801577 (2) (see all 58) |
| 17,20beta-dihydroxy-4-pregnen-3-one |
55.43 |
2 |
2354768 (1), 2307341 (1) |
| ribonucleic acid |
53.84 |
9 |
7989473 (1), 1309346 (1), 8027246 (1), 7775647 (1) (see all 7) |
About this table
|
Transcripts for CGA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_000735
Sigma-Aldrich siRNA for CGA  Sigma-Aldrich shRNA for CGA  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000735 REFSEQ mRNAs for CGA gene: NM_000735.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000735               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000735                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000735                                  untagged cDNA clone in CMV expression vector: NM_000735  Additional cDNA sequence: AB019569.1 AK023644.1 AK311972.1 BC010957.1 BC020782.1 BC055080.1 CR457427.1 CR591068.1 CR591147.1 CR595519.1 CR596397.1 CR598298.1 CR599056.1 CR602651.1 CR607107.1 CR610488.1 CR611195.1 CR611908.1 CR615870.1 CR616045.1 CR622170.1 CR626155.1 FJ624078.1 FJ624079.1 V00518.1 18 DOTS entries: DT.91781433 DT.95152109 DT.100800521 DT.100855932 DT.95152115 DT.121386018 DT.91748275 DT.100703812 DT.97772825 DT.101985644 DT.121385758 DT.95152122 DT.100703816 DT.100703822 DT.121385745 DT.121385989 DT.91781405 DT.95152112 24/891 AceView cDNA sequences (see all 891
):CD242963 CD239717 CD106061 CD106975 CD251030 CD251589 BG435360 CD107356 BG572887 CD250906 CD238220 AA369238 W86567 R71429 CD517981 CD238209 CD239131 AU137688 CD238991 CD238306 BG621386 BG623146 CD239545 BG572343
highest scoring ESTs for CGA:AA092161 AA369238 AI189849 AL550768 AL550786 AL552276 AL554137 AL554275 AU134687 AU134698 Unigene Cluster for CGA: Glycoprotein hormones, alpha polypeptide Hs.119689 [show with all ESTs]Unigene Representative Sequence: AK023644
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for CGA
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3a | · | 3b | ^ | 4 | ^ | 5a | · | 5b | · | 5c | ^ | 6a | · | 6b | · | 6c | |
| SP1: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |
| SP2: | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP3: | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | - |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CGA
1 Ensembl transcript including schematic representation: ENST00000369582
|
Expression for CGA
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CGA expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CGA
1 / 2 / 3 5 probe-sets matching CGA gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGCTGCTGCT
SOURCE GeneReport for Unigene cluster: Hs.119689
Expression variation in blood from EXPOLDB for CGA |
Orthologs for CGA
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CGA gene from 5/9 species (see all 9
)
About this table Species with no ortholog for CGA
ENSEMBL Gene Tree for CGA | Paralogs for CGA(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for CGA(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CGA (up to first 250kb)
|
Disorders & Mutations for CGA
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 118850
10/93 Novoseek disease relationships for CGA gene (see all 93
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| ovarian hyperstimulation syndrome |
90.00 |
44 |
18238999 (2), 10221701 (1), 10966979 (1), 15807221 (1) (see all 36) |
| pregnancy tubal |
83.55 |
45 |
2406662 (4), 9348261 (3), 7926077 (2), 9070731 (2) (see all 29) |
| down syndrome |
80.89 |
231 |
10585342 (7), 17962101 (5), 7497141 (5), 7518896 (4) (see all 99) |
| pregnancy ectopic |
80.07 |
98 |
7682316 (4), 1379268 (3), 10834324 (3), 1386659 (3) (see all 59) |
| infertility |
78.80 |
65 |
10831544 (3), 12960071 (2), 18681993 (2), 11726579 (2) (see all 47) |
| trophoblastic disease |
73.43 |
32 |
11263936 (3), 8563483 (2), 16189178 (2), 7510202 (2) (see all 17) |
| choriocarcinoma |
69.72 |
49 |
1397383 (5), 17563738 (2), 10632747 (2), 2289629 (2) (see all 29) |
| polycystic ovary syndrome |
69.31 |
15 |
15734758 (2), 8476833 (1), 19146766 (1), 1901089 (1) (see all 14) |
| spontaneous abortion |
68.97 |
61 |
16225575 (5), 7947503 (4), 10834324 (4), 8319370 (3) (see all 32) |
| hydatidiform mole |
67.81 |
38 |
8157712 (4), 16638033 (3), 16189178 (3), 8906012 (3) (see all 17) |
About this table
Human Genome Epidemiology Navigator: CGA (22 documents)
|
Medical News for CGA(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for CGA (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1359 PubMed articles for CGA gene (see all 1359
):- The gene encoding the common alpha subunit of the four human glycoprotein hormones. (PubMed id 6286817)2, 3, 4 Fiddes J.C. and Goodman H.M. (1981)
- Structure of human follicle-stimulating hormone in complex with its receptor. (PubMed id 15662415)3, 4 Fan Q.R. and Hendrickson W.A. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- NMR studies of the free alpha subunit of human chorionic gonadotropin. Structural influences of N-glycosylation and the beta subunit on the conformation of the alpha subunit. (PubMed id 8898911)3, 4 de Beer T.... Vliegenthart J.F.G. (1996)
- Structure and regulation of human thyroid-stimulating hormone (TSH) gene. (PubMed id 8196184)3, 4 Miyoshi I.... Hayashizaki Y. (1994)
- Crystal structure of human chorionic gonadotropin. (PubMed id 8202136)3, 4 Lapthorn A.J.... Isaacs N.W. (1994)
- NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin. (PubMed id 1991473)3, 4 Weisshaar G.... Nimtz M. (1991)
- The amino acid sequences of the prepeptides contained in the alpha and beta subunits of human choriogonadotropin. (PubMed id 7462224)3, 4 Birken S.... Boime I. (1981)
- Studies on the disulfide bonds in human pituitary follicle- stimulating hormone. (PubMed id 6774759)3, 4 Fujiki Y.... Saxena B.B. (1980)
- Assignment of disulfide bonds in the alpha subunit of human chorionic gonadotropin. (PubMed id 7410374)3, 4 Mise T. and Bahl O.P. (1980)
|
Search for CGA
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CGA
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CGA
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CGA(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CGA(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CGA:

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 | | | | |
|
 |  |  |
| | Recombinant Proteins (hCG alpha 2, hCG alpha, TSH, hCG alpha 6, hCG alpha 3, Glycoprotein hormones (alpha 5), FSH, Luteinizing Hormone alpha, hCG alpha 4, TSH alpha , hCG alpha + beta) | | Antibodies (hCG alpha 2, hCG alpha, TSH, hCG alpha 6, hCG alpha 3, Glycoprotein hormones (alpha 5), FSH, Luteinizing Hormone alpha, hCG alpha 4, TSH alpha , hCG alpha + beta) |
| | | Search Tocris compounds for CGA |
|
 |
 | | | Antibodies for CGA |
| |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|