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Aliases for CFTR-AS1 Gene

Subcategory (RNA class) for CFTR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CFTR-AS1 Gene

  • CFTR Antisense RNA 1 2 3
  • AC000111.1 5
  • BGas 3

External Ids for CFTR-AS1 Gene

Summaries for CFTR-AS1 Gene

GeneCards Summary for CFTR-AS1 Gene

CFTR-AS1 (CFTR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CFTR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFTR-AS1 Gene

Genomics for CFTR-AS1 Gene

Regulatory Elements for CFTR-AS1 Gene

Enhancers for CFTR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H117587 1.2 ENCODE dbSUPER 11.2 -24.7 -24686 2 PKNOX1 FOXA2 RB1 BMI1 BRCA1 RAD21 RARA RCOR1 ATF7 RUNX3 CFTR-AS1 ENSG00000234001 ENSG00000083622
GH07H117605 0.6 ENCODE 10.5 -41.2 -41186 0 SCRT1 FOXA2 SCRT2 CEBPB MAX HNF4A EP300 CFTR-AS1 ENSG00000234001 ENSG00000083622
GH07H117585 0.4 dbSUPER 11.2 -21.4 -21432 0 GATA3 CFTR-AS1 ENSG00000234001
GH07H117603 0.4 dbSUPER 10.5 -39.1 -39124 0 PKNOX1 CFTR-AS1 ENSG00000234001 ENSG00000083622
GH07H117630 0.4 ENCODE 10.4 -66.0 -65966 0 ZNF701 SPI1 LSM8 CFTR-AS1 ENSG00000083622 ENSG00000234001
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CFTR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CFTR-AS1 Gene

Chromosome:
7
Start:
117,560,733 bp from pter
End:
117,564,676 bp from pter
Size:
3,944 bases
Orientation:
Minus strand

Genomic View for CFTR-AS1 Gene

Genes around CFTR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFTR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFTR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CFTR-AS1 Gene

Proteins for CFTR-AS1 Gene

Post-translational modifications for CFTR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFTR-AS1 Gene

Domains & Families for CFTR-AS1 Gene

Gene Families for CFTR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CFTR-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFTR-AS1 Gene

Function for CFTR-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFTR-AS1 Gene

Localization for CFTR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CFTR-AS1 Gene

Pathways & Interactions for CFTR-AS1 Gene

SuperPathways for CFTR-AS1 Gene

No Data Available

Interacting Proteins for CFTR-AS1 Gene

Gene Ontology (GO) - Biological Process for CFTR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFTR-AS1 Gene

Drugs & Compounds for CFTR-AS1 Gene

No Compound Related Data Available

Transcripts for CFTR-AS1 Gene

mRNA/cDNA for CFTR-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CFTR-AS1 Gene

No ASD Table

Relevant External Links for CFTR-AS1 Gene

GeneLoc Exon Structure for
CFTR-AS1
ECgene alternative splicing isoforms for
CFTR-AS1

Expression for CFTR-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFTR-AS1 Gene

Orthologs for CFTR-AS1 Gene

Evolution for CFTR-AS1 Gene

ENSEMBL:
Gene Tree for CFTR-AS1 (if available)
TreeFam:
Gene Tree for CFTR-AS1 (if available)

No data available for Orthologs for CFTR-AS1 Gene

Paralogs for CFTR-AS1 Gene

No data available for Paralogs for CFTR-AS1 Gene

Variants for CFTR-AS1 Gene

Relevant External Links for CFTR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFTR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CFTR-AS1 Gene

Disorders for CFTR-AS1 Gene

No disorders were found for CFTR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CFTR-AS1 Gene

Publications for CFTR-AS1 Gene

  1. Long Non-coding RNA BGas Regulates the Cystic Fibrosis Transmembrane Conductance Regulator. (PMID: 27434588) Saayman SM … Morris KV (Molecular therapy : the journal of the American Society of Gene Therapy 2016) 2 3 60
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 60

Products for CFTR-AS1 Gene

Sources for CFTR-AS1 Gene

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