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Aliases for CFLAR-AS1 Gene

Subcategory (RNA class) for CFLAR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CFLAR-AS1 Gene

  • CFLAR Antisense RNA 1 2 3 5
  • Amyotrophic Lateral Sclerosis 2 (Juvenile) Chromosome Region, Candidate 10 2 3
  • CFLAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • ALS2CR10 3

External Ids for CFLAR-AS1 Gene

Previous HGNC Symbols for CFLAR-AS1 Gene

  • ALS2CR10

Previous GeneCards Identifiers for CFLAR-AS1 Gene

  • GC02M202007

Summaries for CFLAR-AS1 Gene

GeneCards Summary for CFLAR-AS1 Gene

CFLAR-AS1 (CFLAR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CFLAR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFLAR-AS1 Gene

Genomics for CFLAR-AS1 Gene

GeneHancer (GH) Regulatory Elements for CFLAR-AS1 Gene

Promoters and enhancers for CFLAR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I201154 Enhancer 1.4 Ensembl ENCODE dbSUPER 550.8 +0.6 638 5 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 IRF4 SLC30A9 ZNF766 CFLAR-AS1 PPIL3 CASP10 LOC105373835 ORC2 GC02P201142 CFLAR
GH02I201114 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 13.5 +33.6 33607 19 FEZF1 DMAP1 YBX1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 CFLAR PPIL3 CLK1 ORC2 CASP10 CFLAR-AS1 CDK15 KCTD18 FAM126B LOC105373835
GH02I201070 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.2 +86.0 86001 2.8 CLOCK ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 FAM126B NDUFB3 ORC2 CLK1 CDK15 KCTD18 RNU6-762P CFLAR-AS1 MPP4 ENSG00000273209
GH02I201218 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.1 -62.0 -62006 2.7 HDAC1 PKNOX1 ATF1 ZEB1 CHAMP1 TCF12 FOS ETV6 ATF7 CREM CASP10 CFLAR-AS1 LOC105373835 ORC2 PPIL3 CFLAR MTND4LP13 CASP8
GH02I201203 Enhancer 1.1 ENCODE dbSUPER 10.6 -46.6 -46642 1.8 FOXA2 MLX ARID4B DMAP1 ZNF48 SLC30A9 ATF7 RXRA SP5 MXD4 CASP8 CASP10 CFLAR-AS1 LOC105373835 ORC2 TMEM237 RNU6-651P PPIL3 CFLAR MTND5P25
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CFLAR-AS1 Gene

Genomic Locations for CFLAR-AS1 Gene
chr2:201,140,278-201,157,823
(GRCh38/hg38)
Size:
17,546 bases
Orientation:
Minus strand
chr2:202,005,007-202,022,546
(GRCh37/hg19)

Genomic View for CFLAR-AS1 Gene

Genes around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFLAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFLAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFLAR-AS1 Gene

Proteins for CFLAR-AS1 Gene

Post-translational modifications for CFLAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFLAR-AS1 Gene

Domains & Families for CFLAR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFLAR-AS1 Gene

Function for CFLAR-AS1 Gene

Phenotypes From GWAS Catalog for CFLAR-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFLAR-AS1 Gene

Localization for CFLAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CFLAR-AS1 Gene

Pathways & Interactions for CFLAR-AS1 Gene

SuperPathways for CFLAR-AS1 Gene

No Data Available

Interacting Proteins for CFLAR-AS1 Gene

Gene Ontology (GO) - Biological Process for CFLAR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFLAR-AS1 Gene

Drugs & Compounds for CFLAR-AS1 Gene

No Compound Related Data Available

Transcripts for CFLAR-AS1 Gene

mRNA/cDNA for CFLAR-AS1 Gene

(2) Additional mRNA sequences :
(23) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CFLAR-AS1 Gene

CFLAR antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFLAR-AS1 Gene

No ASD Table

Relevant External Links for CFLAR-AS1 Gene

GeneLoc Exon Structure for
CFLAR-AS1
ECgene alternative splicing isoforms for
CFLAR-AS1

Expression for CFLAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFLAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CFLAR-AS1 Gene

This gene is overexpressed in Whole Blood (x6.5).

SOURCE GeneReport for Unigene cluster for CFLAR-AS1 Gene:

Hs.664613
genes like me logo Genes that share expression patterns with CFLAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFLAR-AS1 Gene

Orthologs for CFLAR-AS1 Gene

Evolution for CFLAR-AS1 Gene

ENSEMBL:
Gene Tree for CFLAR-AS1 (if available)
TreeFam:
Gene Tree for CFLAR-AS1 (if available)

No data available for Orthologs for CFLAR-AS1 Gene

Paralogs for CFLAR-AS1 Gene

No data available for Paralogs for CFLAR-AS1 Gene

Variants for CFLAR-AS1 Gene

Sequence variations from dbSNP and Humsavar for CFLAR-AS1 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000008921 -- 201,142,013(-) C/T intron_variant
rs1000192673 -- 201,144,623(-) C/G intron_variant
rs1000363173 -- 201,141,970(-) A/T intron_variant
rs1000677745 -- 201,153,651(-) A/G non_coding_transcript_variant
rs1000735229 -- 201,143,417(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for CFLAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3593972 CNV loss 21293372
nsv584160 CNV loss 21841781

Additional Variant Information for CFLAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFLAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CFLAR-AS1 Gene

Disorders for CFLAR-AS1 Gene

Additional Disease Information for CFLAR-AS1

No disorders were found for CFLAR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFLAR-AS1 Gene

Publications for CFLAR-AS1 Gene

  1. Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma. (PMID: 27855375) Hu HB … Zheng XX (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2016) 2 3 58
  2. A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. (PMID: 11586298) Hadano S … Ikeda JE (Nature genetics 2001) 3 58

Products for CFLAR-AS1 Gene

Sources for CFLAR-AS1 Gene

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