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Aliases for CFLAR-AS1 Gene

Subcategory (RNA class) for CFLAR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CFLAR-AS1 Gene

  • CFLAR Antisense RNA 1 2 3 5
  • Amyotrophic Lateral Sclerosis 2 (Juvenile) Chromosome Region, Candidate 10 2 3
  • CFLAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • ALS2CR10 3

External Ids for CFLAR-AS1 Gene

Previous HGNC Symbols for CFLAR-AS1 Gene

  • ALS2CR10

Previous GeneCards Identifiers for CFLAR-AS1 Gene

  • GC02M202007

Summaries for CFLAR-AS1 Gene

GeneCards Summary for CFLAR-AS1 Gene

CFLAR-AS1 (CFLAR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CFLAR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFLAR-AS1 Gene

Genomics for CFLAR-AS1 Gene

Regulatory Elements for CFLAR-AS1 Gene

Enhancers for CFLAR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H201114 1.9 FANTOM5 ENCODE dbSUPER 13.5 +33.6 33608 19 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 SP3 MEF2D SSRP1 ZNF610 PPIL3 ORC2 CLK1 CDK15 CFLAR CASP10 KCTD18 FZD7 CFLAR-AS1 FAM126B
GH02H201218 1.4 Ensembl ENCODE dbSUPER 11.1 -62.0 -62006 2.7 HDAC1 PKNOX1 ATF1 ZEB1 CHAMP1 TCF12 FOS ATF7 ETV6 CREM CASP10 CFLAR-AS1 LOC105373835 ORC2 PPIL3 CFLAR MTND4LP13 CASP8
GH02H201070 1.2 ENCODE 11.2 +86.0 85964 2.8 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 ZC3H11A NFYC MEF2D ORC2 CLK1 CDK15 KCTD18 CFLAR-AS1 MPP4 ENSG00000273209 SPATS2L TMEM237 PPIL3
GH02H201203 1.2 ENCODE dbSUPER 10.6 -46.6 -46643 1.8 FOXA2 ATF1 MLX ARID4B DMAP1 SLC30A9 ATF7 SP5 MXD4 MIER2 CASP8 CASP10 CFLAR-AS1 LOC105373835 ORC2 TMEM237 RNU6-651P PPIL3 CFLAR MTND5P25
GH02H200966 1.2 Ensembl ENCODE 10.6 +189.7 189650 2.8 ATF1 ZSCAN4 INSM2 FEZF1 BATF ZNF2 ZEB1 ZNF366 FOS ATF7 CASP10 CFLAR-AS1 BICD1P1 PPIL3 ORC2 HNRNPA1P35
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for CFLAR-AS1 Gene

Genomic Locations for CFLAR-AS1 Gene
chr2:201,140,278-201,157,823
(GRCh38/hg38)
Size:
17,546 bases
Orientation:
Minus strand
chr2:202,005,007-202,022,546
(GRCh37/hg19)

Genomic View for CFLAR-AS1 Gene

Genes around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFLAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFLAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFLAR-AS1 Gene

Proteins for CFLAR-AS1 Gene

Post-translational modifications for CFLAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFLAR-AS1 Gene

Domains & Families for CFLAR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFLAR-AS1 Gene

Function for CFLAR-AS1 Gene

Phenotypes From GWAS Catalog for CFLAR-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFLAR-AS1 Gene

Localization for CFLAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CFLAR-AS1 Gene

Pathways & Interactions for CFLAR-AS1 Gene

SuperPathways for CFLAR-AS1 Gene

No Data Available

Interacting Proteins for CFLAR-AS1 Gene

Gene Ontology (GO) - Biological Process for CFLAR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFLAR-AS1 Gene

Drugs & Compounds for CFLAR-AS1 Gene

No Compound Related Data Available

Transcripts for CFLAR-AS1 Gene

mRNA/cDNA for CFLAR-AS1 Gene

(2) Additional mRNA sequences :
(23) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CFLAR-AS1 Gene

CFLAR antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFLAR-AS1 Gene

No ASD Table

Relevant External Links for CFLAR-AS1 Gene

GeneLoc Exon Structure for
CFLAR-AS1
ECgene alternative splicing isoforms for
CFLAR-AS1

Expression for CFLAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFLAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CFLAR-AS1 Gene

This gene is overexpressed in Whole Blood (x6.5).

SOURCE GeneReport for Unigene cluster for CFLAR-AS1 Gene:

Hs.664613
genes like me logo Genes that share expression patterns with CFLAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFLAR-AS1 Gene

Orthologs for CFLAR-AS1 Gene

Evolution for CFLAR-AS1 Gene

ENSEMBL:
Gene Tree for CFLAR-AS1 (if available)
TreeFam:
Gene Tree for CFLAR-AS1 (if available)

No data available for Orthologs for CFLAR-AS1 Gene

Paralogs for CFLAR-AS1 Gene

No data available for Paralogs for CFLAR-AS1 Gene

Variants for CFLAR-AS1 Gene

Sequence variations from dbSNP and Humsavar for CFLAR-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000008921 -- 201,142,013(+) GCTCA(C/T)GCCTG intron-variant, downstream-variant-500B
rs1000192673 -- 201,144,623(+) AGTGG(C/G)AGAAT intron-variant
rs1000363173 -- 201,141,970(+) TAAAA(A/T)AAAAG intron-variant, downstream-variant-500B
rs1000677745 -- 201,153,651(+) AAGGT(A/G)ATTGC intron-variant, nc-transcript-variant
rs1000735229 -- 201,143,417(+) TCGTG(A/G)GCCGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CFLAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3593972 CNV loss 21293372
nsv584160 CNV loss 21841781

Relevant External Links for CFLAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFLAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CFLAR-AS1 Gene

Disorders for CFLAR-AS1 Gene

Relevant External Links for CFLAR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFLAR-AS1

No disorders were found for CFLAR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFLAR-AS1 Gene

Publications for CFLAR-AS1 Gene

  1. Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma. (PMID: 27855375) Hu HB … Zheng XX (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2016) 2 3 60
  2. A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. (PMID: 11586298) Hadano S … Ikeda JE (Nature genetics 2001) 3 60

Products for CFLAR-AS1 Gene

Sources for CFLAR-AS1 Gene

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