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Aliases for CFLAR-AS1 Gene

Subcategory (RNA class) for CFLAR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CFLAR-AS1 Gene

  • CFLAR Antisense RNA 1 2 3 5
  • Amyotrophic Lateral Sclerosis 2 (Juvenile) Chromosome Region, Candidate 10 2 3
  • CFLAR Antisense RNA 1 (Non-Protein Coding) 2 3
  • ALS2CR10 3

External Ids for CFLAR-AS1 Gene

Previous HGNC Symbols for CFLAR-AS1 Gene

  • ALS2CR10

Previous GeneCards Identifiers for CFLAR-AS1 Gene

  • GC02M202007

Summaries for CFLAR-AS1 Gene

GeneCards Summary for CFLAR-AS1 Gene

CFLAR-AS1 (CFLAR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFLAR-AS1 Gene

Genomics for CFLAR-AS1 Gene

Regulatory Elements for CFLAR-AS1 Gene

Enhancers for CFLAR-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G201114 1.9 FANTOM5 ENCODE dbSUPER 13.5 +33.6 33608 19.0 CREB3L1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 PPIL3 CFLAR CASP10 LOC100130026 CLK1 CFLAR-AS1 FAM126B ORC2 LOC105373835 CASP8
GH02G201218 1.4 Ensembl ENCODE dbSUPER 11.1 -62.0 -62006 2.7 HDAC1 HDGF PKNOX1 ATF1 ZNF2 ZEB1 CHAMP1 TCF12 GATA2 SCRT2 CASP10 CFLAR-AS1 LOC105373835 ORC2 PPIL3 CFLAR MTND4LP13 CASP8
GH02G201070 1.2 ENCODE 11.2 +86.0 85964 2.8 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 NFYC ORC2 CFLAR-AS1 ENSG00000273209 PPIL3 FAM126B RNU6-1206P
GH02G201203 1.2 ENCODE dbSUPER 10.6 -46.6 -46643 1.8 HNRNPUL1 FOXA2 ATF1 MLX ARID4B DMAP1 ZNF48 TCF12 SLC30A9 GATA2 CASP8 CASP10 CFLAR-AS1 LOC105373835 ORC2 TMEM237 RNU6-651P PPIL3 CFLAR MTND5P25
GH02G200966 1.2 Ensembl ENCODE 10.6 +189.7 189650 2.8 ATF1 ZSCAN4 INSM2 FEZF1 ZNF2 ZEB1 ZNF366 FOS IKZF2 CREM CASP10 CFLAR-AS1 BICD1P1 PPIL3 ORC2 HNRNPA1P35
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CFLAR-AS1 Gene

Chromosome:
2
Start:
201,140,278 bp from pter
End:
201,157,823 bp from pter
Size:
17,546 bases
Orientation:
Minus strand

Genomic View for CFLAR-AS1 Gene

Genes around CFLAR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFLAR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFLAR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFLAR-AS1 Gene

Proteins for CFLAR-AS1 Gene

Post-translational modifications for CFLAR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFLAR-AS1 Gene

Domains & Families for CFLAR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFLAR-AS1 Gene

Function for CFLAR-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFLAR-AS1 Gene

Localization for CFLAR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CFLAR-AS1 Gene

Pathways & Interactions for CFLAR-AS1 Gene

SuperPathways for CFLAR-AS1 Gene

No Data Available

Interacting Proteins for CFLAR-AS1 Gene

Gene Ontology (GO) - Biological Process for CFLAR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFLAR-AS1 Gene

Drugs & Compounds for CFLAR-AS1 Gene

No Compound Related Data Available

Transcripts for CFLAR-AS1 Gene

mRNA/cDNA for CFLAR-AS1 Gene

(2) Additional mRNA sequences :
(23) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CFLAR-AS1 Gene

CFLAR antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFLAR-AS1 Gene

No ASD Table

Relevant External Links for CFLAR-AS1 Gene

GeneLoc Exon Structure for
CFLAR-AS1
ECgene alternative splicing isoforms for
CFLAR-AS1

Expression for CFLAR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFLAR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CFLAR-AS1 Gene

This gene is overexpressed in Whole Blood (x6.5).

SOURCE GeneReport for Unigene cluster for CFLAR-AS1 Gene:

Hs.664613
genes like me logo Genes that share expression patterns with CFLAR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFLAR-AS1 Gene

Orthologs for CFLAR-AS1 Gene

Evolution for CFLAR-AS1 Gene

ENSEMBL:
Gene Tree for CFLAR-AS1 (if available)
TreeFam:
Gene Tree for CFLAR-AS1 (if available)

No data available for Orthologs for CFLAR-AS1 Gene

Paralogs for CFLAR-AS1 Gene

No data available for Paralogs for CFLAR-AS1 Gene

Variants for CFLAR-AS1 Gene

Sequence variations from dbSNP and Humsavar for CFLAR-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000008921 -- 201,142,013(+) GCTCA(C/T)GCCTG intron-variant, downstream-variant-500B
rs1000192673 -- 201,144,623(+) AGTGG(C/G)AGAAT intron-variant
rs1000363173 -- 201,141,970(+) TAAAA(A/T)AAAAG intron-variant, downstream-variant-500B
rs1000677745 -- 201,153,651(+) AAGGT(A/G)ATTGC intron-variant, nc-transcript-variant
rs1000735229 -- 201,143,417(+) TCGTG(A/G)GCCGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CFLAR-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3593972 CNV loss 21293372
nsv584160 CNV loss 21841781

Relevant External Links for CFLAR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFLAR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CFLAR-AS1 Gene

Disorders for CFLAR-AS1 Gene

Relevant External Links for CFLAR-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFLAR-AS1

No disorders were found for CFLAR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFLAR-AS1 Gene

Publications for CFLAR-AS1 Gene

  1. Three Circulating LncRNA Predict Early Progress of Esophageal Squamous Cell Carcinoma. (PMID: 27855375) Hu H.B. … Zheng X.X. (Cell. Physiol. Biochem. 2016) 2 3 64
  2. A gene encoding a putative GTPase regulator is mutated in familial amyotrophic lateral sclerosis 2. (PMID: 11586298) Hadano S. … Ikeda J.-E. (Nat. Genet. 2001) 3 64

Products for CFLAR-AS1 Gene

Sources for CFLAR-AS1 Gene

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