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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

CFL1 Gene

protein-coding   GIFtS: 65
GCID: GC11M065622

cofilin 1 (non-muscle)


(Previous symbol: CFL)
 Explore 42 diseases affiliated with
CFL1 via our new
 Human Malady Compendium 
Biological research products
for CFL1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Cofilin 1 (Non-Muscle)1 2
CFL1 2 3
Cofilin, Non-Muscle Isoform2 3
18 KDa Phosphoprotein2 3
P181
Cofilin-11

External Ids:    HGNC: 18741   Entrez Gene: 10722   Ensembl: ENSG000001727577   OMIM: 6014425   UniProtKB: P235283   

Export aliases for CFL1 gene to outside databases

Previous GC identifers: GC11M068156 GC11M067303 GC11M065872 GC11M065397 GC11M065378 GC11M061948


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for CFL1:
The protein encoded by this gene can polymerize and depolymerize F-actin and G-actin in a pH-dependent manner.
Increased phosphorylation of this protein by LIM kinase aids in Rho-induced reorganization of the actin cytoskeleton.
Cofilin is a widely distributed intracellular actin-modulating protein that binds and depolymerizes filamentous
F-actin and inhibits the polymerization of monomeric G-actin in a pH-dependent manner. It is involved in the
translocation of actin-cofilin complex from cytoplasm to nucleus.(supplied by OMIM, Apr 2004)

UniProtKB/Swiss-Prot: COF1_HUMAN, P23528
Function: Binds to F-actin and exhibits pH-sensitive F-actin depolymerizing activity. Regulates actin cytoskeleton
dynamics. Important for normal progress through mitosis and normal cytokinesis. Plays a role in the regulation of cell
morphology and cytoskeletal organization

Gene Wiki entry for CFL1 (Cofilin 1)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_167190.1  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the CFL1 gene promoter:
         p53   AP-1   Pax-6   ATF-2   Lmo2   E47   GATA-2   COMP1   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 3): CFL1 promoter sequence
   Search SABiosciences Chromatin IP Primers for CFL1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CFL1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13   Ensembl cytogenetic band:  11q13.1   HGNC cytogenetic band: 11q13.1

CFL1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
CFL1 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M065622:  view genomic region     (about GC identifiers)

Start:
65,590,493 bp from pter      End:
65,629,497 bp from pter
Size:
39,005 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: COF1_HUMAN, P23528 (See protein sequence)
Recommended Name: Cofilin-1  
Size: 166 amino acids; 18502 Da
Subunit: Can bind G- and F-actin in a 1:1 ratio of cofilin to actin. It is a major component of intranuclear and
cytoplasmic actin rods
Subcellular location: Nucleus matrix. Cytoplasm, cytoskeleton. Cell projection, ruffle membrane; Peripheral membrane
protein; Cytoplasmic side. Cell projection, lamellipodium membrane; Peripheral membrane protein; Cytoplasmic side.
Note=Colocalizes with the actin cytoskeleton in membrane ruffles and lamellipodia. Detected at the cleavage furrow and
contractile ring during cytokinesis. Almost completely in nucleus in cells exposed to heat shock or 10% dimethyl
sulfoxide
3 PDB 3D structures from and Proteopedia for CFL1:
1Q8G (3D)        1Q8X (3D)        3J0S (3D)    
Secondary accessions: B3KUQ1 Q53Y87 Q9UCA2

Explore the universe of human proteins at neXtProt for CFL1: NX_P23528

Post-translational modifications:

  • Inactivated by phosphorylation on Ser-3. Phosphorylated on Ser-3 in resting cells (By similarity). Dephosphorylated by
  • PDXP/chronophin; this restores its activity in promoting actin filament depolymerization. The phosphorylation of
    Ser-24 may prevent recognition of the nuclear localization signal (By similarity)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P23528

  • CFL1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_005498.1  
    ENSEMBL proteins: 
     ENSP00000432660   ENSP00000432155   ENSP00000433910   ENSP00000432226   ENSP00000431696  
     ENSP00000433131   ENSP00000436431   ENSP00000436899   ENSP00000433308   ENSP00000432153  
     ENSP00000309629  
    Reactome Protein details: P23528
    Human Recombinant Protein Products: 
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    Novus Biologicals CFL1 Proteins
    Novus Biologicals CFL1 Lysate
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    ProSpec Recombinant Protein for CFL1
    Uscn Proteins for CFL1

    Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus TAS16130169
    GO:0005737cytoplasm TAS16130169
    GO:0005856cytoskeleton ----
    GO:0016363nuclear matrix IEA--


    CFL1 for ontologies           About GeneDecksing



    CFL1 Antibody Products: 
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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    CFL1 for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR027234 Cofilin_1/2
     IPR002108 Actin-bd_cofilin/tropomyosin
     IPR017904 ADF/Cofilin/Destrin

    Graphical View of Domain Structure for InterPro Entry P23528

    ProtoNet protein and cluster: P23528

    1 Blocks protein family: IPB002108 Actin-binding

    UniProtKB/Swiss-Prot: COF1_HUMAN, P23528
    Similarity: Belongs to the actin-binding proteins ADF family
    Similarity: Contains 1 ADF-H domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: COF1_HUMAN, P23528
    Function: Binds to F-actin and exhibits pH-sensitive F-actin depolymerizing activity. Regulates actin cytoskeleton
    dynamics. Important for normal progress through mitosis and normal cytokinesis. Plays a role in the regulation of cell
    morphology and cytoskeletal organization
    Induction: Up-regulated in response to enterovirus 71 (EV71) infection (at protein level)

         Genatlas biochemistry entry for CFL1:
    cofilin 1,actin-binding protein,non-muscle type,depolymerisation factor of F-actin to G-actin

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    8/21 QIAGEN miScript miRNA Assays for microRNAs that regulate CFL1 (see all 21):
    hsa-miR-3128 hsa-miR-596 hsa-miR-185* hsa-miR-1271 hsa-miR-486-3p hsa-miR-3916 hsa-miR-3125 hsa-miR-342-5p
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    Inhib. RNA
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003779actin binding IEA--
    GO:0005515protein binding IPI16713569


    CFL1 for ontologies           About GeneDecksing


    8 GenomeRNAi human phenotypes for CFL1:
     Abundance of large cells with   Increased Salmonella enterica   Increased Salmonella enterica   Increased Salmonella enterica  
     Increased Salmonella enterica   Increased Salmonella enterica   Increased Salmonella-containin  Synthetic lethal with Ras 

    Animal Models:
         Mouse knock-out Cfl1tm1.2Wit for CFL1
         12 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Cfl1):
     behavior/neurological  cellular  embryogenesis  growth/size  homeostasis/metabolism 
     integument  mortality/aging  nervous system  no phenotypic analysis  normal 
     renal/urinary system  vision/eye 

    CFL1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/33 super-pathways (see all 33About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Cell adhesion_Integrin-mediated cell adhesion and migration
    Cell adhesion_Integrin-mediated cell adhesion and migration1.00
    Cytoskeleton remodeling Regulation of actin cytoskeleton by Rho GTPases0.49
    Cell adhesion Integrin-mediated cell adhesion and migration1.00
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility0.32
    Cytoskeleton remodeling_Regulation of actin cytoskeleton by Rho GTPases0.49
    Cytoskeleton remodeling_Fibronectin-binding integrins in cell motility0.32
    2G-protein signaling_RAC1 in cellular process
    Cytoskeleton remodeling_CDC42 in cellular processes0.37
    RAC1 signaling pathway0.34
    Cytoskeleton remodeling CDC42 in cellular processes0.37
    CDC42 signaling events0.17
    3Immune response _CCR3 signaling in eosinophils
    Immune response _CCR3 signaling in eosinophils1.00
    Inhibitory action of Lipoxins on neutrophil migration0.51
    Immune response CCR3 signaling in eosinophils1.00
    4Actin Nucleation by ARP-WASP Complex
    Actin Nucleation and Branching0.66
    CDC42 Pathway0.34
    RhoA Pathway0.35
    5Platelet activation, signaling and aggregation
    Platelet activation, signaling and aggregation1.00
    Hemostasis0.43

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/10 EMD Millipore Pathways for CFL1 (see all 10)
        Cytoskeleton remodeling Role of PKA in cytoskeleton reorganisation
    Cytoskeleton remodeling CDC42 in cellular processes
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility
    Selected targets of GCR-alpha
    Cytoskeleton remodeling Slit-Robo signaling

    5/15 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for CFL1 (see all 15)
        RhoA Pathway
    Sertoli-Sertoli Cell Junction Dynamics
    Actin-Based Motility by Rho Family GTPases
    Guidance Cues and Growth Cone Motility
    Internalin Pathway

    1 Cell Signaling Technology (CST) Pathway for CFL1
        Cytoskeletal Signaling

    5/10 GeneGo (Thomson Reuters) Pathways for CFL1 (see all 10)
        Cytoskeleton remodeling CDC42 in cellular processes
    Cytoskeleton remodeling Role of PKA in cytoskeleton reorganisation
    Cytoskeleton remodeling Fibronectin-binding integrins in cell motility
    Neurophysiological process Receptor-mediated axon growth repulsion
    Development Slit-Robo signaling

    5/6 BioSystems Pathways for CFL1 (see all 6
        G13 Signaling Pathway
    Regulation of Actin Cytoskeleton
    CDC42 signaling events
    CXCR4-mediated signaling events
    RAC1 signaling pathway

    5/12        Reactome Pathways for CFL1 (see all 12)
        Hemostasis
    Developmental Biology
    Fcgamma receptor (FCGR) dependent phagocytosis
    Response to elevated platelet cytosolic Ca2+
    Semaphorin interactions


    4         Kegg Pathways  (Kegg details for CFL1):
        Axon guidance
    Fc gamma R-mediated phagocytosis
    Regulation of actin cytoskeleton
    Pertussis


    CFL1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for CFL1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/241 Interacting proteins for CFL1 (P235281, 2, 3 ENSP000003096294) via UniProtKB, MINT, STRING, and/or I2D (see all 241)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=1 
    HIST1H4BP628053I2D: score=1 
    HIST1H4CP628053I2D: score=1 
    HIST1H4DP628053I2D: score=1 
    HIST1H4EP628053I2D: score=1 
    About this table

    Gene Ontology (GO): 5/19 biological process terms (GO ID links to tree view) (see all 19):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000910cytokinesis IEA--
    GO:0001755neural crest cell migration IEA--
    GO:0001842neural fold formation IEA--
    GO:0002576platelet degranulation TAS--
    GO:0006468protein phosphorylation IEA--


    CFL1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    CFL1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for CFL1

    1 DrugBank Compound for CFL1    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Lauryl Dimethylamine-N-Oxide-- --target--10592235

    4 Novoseek chemical compound relationships for CFL1 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    isocitrate 54.3 1 17269733 (1)
    superoxide 14.6 3 19288589 (1), 17320137 (1), 18335753 (1)
    atp 0 1 16222722 (1)
    calcium 0 3 8037689 (1)

    Search CenterWatch for drugs/clinical trials and news about CFL1 / COF1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for CFL1 gene: 
    NM_005507.2  

    Unigene Cluster for CFL1:

    Cofilin 1 (non-muscle)
    Hs.170622  [show with all ESTs]
    Unigene Representative Sequence: BM462286
    15 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000530157 ENST00000527752 ENST00000525710 ENST00000525451(uc001ofs.3 uc001oft.3)
    ENST00000530945 ENST00000527344 ENST00000531407 ENST00000524553 ENST00000534769
    ENST00000531413 ENST00000532134 ENST00000530413 ENST00000534784 ENST00000526975
    ENST00000308162

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    8/21 QIAGEN miScript miRNA Assays for microRNAs that regulate CFL1 (see all 21):
    hsa-miR-3128 hsa-miR-596 hsa-miR-185* hsa-miR-1271 hsa-miR-486-3p hsa-miR-3916 hsa-miR-3125 hsa-miR-342-5p
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    Additional cDNA sequence: 

    AK097690.1 AK303614.1 BC011005.2 BC012265.1 BC012318.1 BC018256.2 BC024975.1 BT006846.1 
    D00682.1 HM370399.1 U21909.1 X95404.1 

    24/79 DOTS entries (see all 79):

    DT.100034533  DT.95300732  DT.92469951  DT.95257655  DT.95257774  DT.95257650  DT.100710996  DT.453374 
    DT.100710974  DT.100710983  DT.120689975  DT.95257692  DT.120690019  DT.120690158  DT.95257673  DT.100711015 
    DT.120690035  DT.92469974  DT.100711007  DT.100710990  DT.95314585  DT.100710991  DT.120690037  DT.92469996 

    24/2886 AceView cDNA sequences (see all 2886):

    BM988917 BU527582 CB124979 CR598143 BM455139 BE018272 CR591283 AA576832 
    BQ641888 BM993307 BQ005722 AI672937 W72739 CB156908 AA319490 BQ068189 
    BQ064959 BM913496 CB127486 AU151344 AI685940 T35473 CB137167 BM826201 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    CFL1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GAAGCAGGAC

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    CFL1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    KidneyUreteric BudUreteric Bud CellsKidney
    HeartAtrioventricular NodeAtrioventricular Node CellsMyocardium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See CFL1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for CFL1

    SOURCE GeneReport for Unigene cluster: Hs.170622

    UniProtKB/Swiss-Prot: COF1_HUMAN, P23528
    Tissue specificity: Widely distributed in various tissues

        SABiosciences Expression via Pathway-Focused PCR Arrays including CFL1: 
              Cytoskeleton Regulators in human mouse rat
              Apoptosis 384HT in human mouse rat
              Cell Motility in human mouse rat

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    In Situ
    Assay Products:
     

     
    Search Advanced Cell Diagnostics for RNAscope RNA in situ hybridization assays for CFL1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for CFL1 gene from 7/25 species (see all 25)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    lizard
    (Anolis carolinensis)
    Reptilia CFL16
    --
    79(a)
    1 ↔ 1
    AAWZ02038494(1421-3664)
    African clawed frog
    (Xenopus laevis)
    Amphibia BC044691.12   -- 75.98(n)    BC044691.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.281982 Danio rerio clone RZ151A2B11 muscle cofilin 2 (CFL2) mRNA, complete cds less 79.21(n)    AY398324.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta tsr6
    CG68736
    --
    34(a)
    28(a)
    many ↔ many
    many ↔ many
    2R(19931971-19934359)
    X(18633249-18633928)
    worm
    (Caenorhabditis elegans)
    Secernentea unc-606
    Actin-depolymerizing factor 1, isoforms a/b
    20(a)
    1 → many
    V(1474786-1479582)
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons ATADF46
    ADF26
    (see all 12)
    actin depolymerizing factor 2
    (see all 12)
    36(a)
    33(a)
    (see all 12)
    many ↔ many
    many ↔ many
    (see all 12)
    5(24122412-24123912)
    3(16907451-16908999)
    rice
    (Oryza sativa)
    Liliopsida --
    --
    (see all 10)
    actin-depolymerizing factor, putative, expressed
    (see all 10)
    33(a)
    32(a)
    (see all 10)
    many ↔ many
    many ↔ many
    (see all 10)
    2(26914023-26916159)
    4(27634011-27634994)


    ENSEMBL Gene Tree for CFL1 (if available)
    TreeFam Gene Tree for CFL1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for CFL1 gene
    CFL22  DSTN2  
    2 SIMAP similar genes for CFL1 using alignment to 7 protein entries:     COF1_HUMAN (see all proteins):
    CFL2    DSTN

    CFL1 for paralogs           About GeneDecksing


    5/11 Pseudogenes.org Pseudogenes for CFL1 (see all 11)
    PGOHUM00000238876 PGOHUM00000257962 PGOHUM00000257995 PGOHUM00000243889 PGOHUM00000244022


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/116 NCBI SNPs in CFL1 are shown (see all 116    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1421177131,2
    --65621860(+) TGACCC/TTCATA 1 -- ds50010--------
    rs1178711191,2
    F,--65621888(+) CAGGGA/GAGACA 1 -- ds50011Minor allele frequency- G:0.04EA 120
    rs1504608221,2
    --65621927(+) TCTGAC/GTTGCC 1 -- ds50010--------
    rs1383054761,2
    --65621932(+) CTTGCC/GTATCA 1 -- ds50010--------
    rs1887928041,2
    --65621966(+) ACAGAA/GTATCA 1 -- ds50010--------
    rs1173702561,2
    --65621994(+) ATCCAG/AGCAAG 1 -- ds50011Minor allele frequency- A:0.01EA 120
    rs6353751,2
    C,F,A,H,--65621995(+) TCCAGG/ACAAGG 1 -- ds500124Minor allele frequency- A:0.41EA NA MN NS WA 2744
    rs1818068851,2
    --65621998(+) AGGCAA/GGGCTA 1 -- ds50010--------
    rs1496415091,2
    --65622026(+) GCATAA/CATCAC 1 -- ds50010--------
    rs1863070391,2
    --65622035(+) ACTTCC/TGCTGG 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for CFL1 (65590493 - 65629497 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for CFL1
         1 CNV: 3855

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    CFL1 for disorders           About GeneDecksing

    OMIM gene information: 601442    OMIM disorders: --

    20/42 diseases for CFL1 (see all 42):    About MalaCards
    spinal muscular atrophy    corticobasal degeneration    spina bifida    muscular atrophy
    laryngeal squamous cell carcinoma    dent disease    squamous cell carcinoma    myotonic dystrophy
    epithelial ovarian cancer    endometritis    keratoconus    laryngitis
    ovarian cancer    colon adenocarcinoma    proteinuria    parkinson's disease
    rhabdomyosarcoma    pertussis    hepatocellular carcinoma    neurodegeneration

    2 Novoseek disease relationships for CFL1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    shock 0 1 12922171 (1)
    tumors 0 2 18401453 (1), 2278968 (1)

    Human Genome Epidemiology (HuGE) Navigator: CFL1 (1 document)

    Export disorders for CFL1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for CFL1 gene, integrated from 9 sources (see all 213):
    (articles sorted by number of sources associating them with CFL1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Mapping of human non-muscle type cofilin (CFL1) to chromosome 11q13 and muscle-type cofilin (CFL2) to chromosome 14. (PubMed id 8800436)1, 2, 3, 9 Gillett G.T.... Povey S. (1996)
    2. Dephosphorylation of cofilin in stimulated platelets: roles for a GTP-binding protein and Ca2+. (PubMed id 8037689)1, 2, 9 Davidson M.M. and Haslam R.J. (1994)
    3. Transcriptomic and proteomic analyses of rhabdomyosarcoma cells reveal differential cellular gene expression in response to enterovirus 71 infection. (PubMed id 16548883)1, 2 Leong W.F. and Chow V.T. (2006)
    4. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    5. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)1, 2 Rush J.... Comb M.J. (2005)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    7. Solution structure of human cofilin: actin binding, pH sensitivity, and relationship to actin-depolymerizing factor. (PubMed id 14627701)1, 2 Pope B.J.... Ball L.J. (2004)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    9. Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801)1, 2 Gevaert K.... Vandekerckhove J. (2003)
    10. Cofilin phosphorylation and actin polymerization by NRK/NESK, a member of the germinal center kinase family. (PubMed id 12837278)1, 2 Nakano K.... Kitamura N. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 1072 HGNC: 1874 AceView: CFL1andEFEMP2 Ensembl:ENSG00000172757 euGenes: HUgn1072
    ECgene: CFL1 Kegg: 1072 H-InvDB: CFL1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for CFL1 Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for CFL1 Genetics and Cytogenetics in Oncology and Haematology
    Wikipedia http://en.wikipedia.org/wiki/Cofilin

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for CFL1 gene:
    Search GeneIP for patents involving CFL1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    About This Section

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