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Aliases & Descriptions for CFH
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARMD4 2 , 5 ARMS1 1 , 2 CFHL3 2 FH 2 FHL1 1 , 2 HF 2 , 3 HF1 2 , 3 , 5 HF2 2 , 3 HUS 1 , 2 , 5 MGC88246 2 OTTHUMP00000033598 2 beta-1-H-globulin 2 beta-1H 2
Descriptions H factor 1 3 H factor 1 (complement) 1 , 2 H factor 2 (complement) 2 age-related maculopathy susceptibility 1 2 complement factor H 2 complement factor H, isoform b 2 factor H 2 factor H-like 1 2
Search outside databases for aliases for CFH genePrevious GC identifer: GC01P193352
Summaries for CFH (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CFH : This gene is a member of the Regulator of Complement Activation (RCA) gene cluster and encodes aprotein with twenty short concensus repeat (SCR) domains. This protein is secreted into thebloodstream and has an essential role in the regulation of complement activation, restricting thisinnate defense mechanism to microbial infections. Mutations in this gene have been associated withhemolytic-uremic syndrome (HUS) and chronic hypocomplementemic nephropathy. Alternatetranscriptional splice variants, encoding different isoforms, have been characterized. [providedby RefSeq] UniProtKB/Swiss-Prot: CFAH_HUMAN, P08603 Function : Factor H functions as a cofactor in the inactivation of C3b by factor I and alsoincreases the rate of dissociation of the C3bBb complex (C3 convertase) and the (C3b)NBB complex(C5 convertase) in the alternative complement pathway
Gene Wiki entry for CFH (Factor_H)
Genomic Location for CFH
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CFH gene Entrez Gene cytogenetic band: 1q32 Ensembl cytogenetic band: 1q31.3 HGNC cytogenetic band: 1q32 CFH Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P194887:
(about GC identifiers )
Start:
194,887,764 bp from pter
End:
194,983,257 bp from pter
Size:
95,494 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_004487.18 Proteins for CFH
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CFAH_HUMAN, P08603 (See
protein sequence )Recommended Name: Complement factor H precursor Size : 1231 amino acids; 139096 Da
Subcellular location : Secreted
Sequence caution : Sequence=CAB41739.1; Type=Frameshift; Positions=341;
PDB structures from and Proteopedia : 1FHC (3D)
 1HAQ (3D)
 1HCC (3D)
 1HFH (3D)
 1HFI (3D)
 1KOV (3D)
 2BZM (3D)
 2G7I (3D)
 2IC4 (3D)
 2JGW (3D)
 2JGX (3D)
 2QFG (3D)
 2QFH (3D)
 2RLP (3D)
 2RLQ (3D)
 2UWN (3D)
 2V8E (3D)
 2W80 (3D)
 2W81 (3D)
 
Secondary accessions : A5PL14 P78435 Q14570 Q2TAZ5 Q38G77 Q5TFM3 Q8N708 Q9NU86Alternative splicing : 2 isoforms : P08603-1 P08603-2
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000177.2 NP_001014975.1 ENSEMBL proteins: ENSP00000356399 ENSP00000352658 ENSP00000375846 ENSP00000356398 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CFH: Assays for CFH:
Protein
Domains/ Families for CFH(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P08603 ProtoNet protein and cluster: P08603
1 Blocks protein family : IPB000436 Sushi domain/SCR domain/CCP module UniProtKB/Swiss-Prot: CFAH_HUMAN, P08603 Similarity : Contains 20 Sushi (CCP/SCR) domains
Gene Function for CFH
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000186 Applied Biosystems Silencer ® siRNAs for CFH Sigma-Aldrich siRNA for CFH Sigma-Aldrich shRNA for CFH Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000186                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000186                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000186  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000186 UniProtKB/Swiss-Prot: CFAH_HUMAN, P08603 Function : Factor H functions as a cofactor in the inactivation of C3b by factor I and alsoincreases the rate of dissociation of the C3bBb complex (C3 convertase) and the (C3b)NBB complex(C5 convertase) in the alternative complement pathway
6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Cfh) : Pathways & Interactions for CFH
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for CFH (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CFH 5/35 Interacting proteins for CFH (ENSP00000356399 3 ) via UniProtKB, MINT, and/or STRING (see all 35
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0006957 complement activation, alternative pathway
IEA --
About this table
Drugs & Compounds for CFH (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for CFH 10 Novoseek chemical compound relationships for CFH gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
sialic acid
16.85
8
9480984 (2), 16263173 (1), 12471127 (1), 16751403 (1)
glycosaminoglycan
14.75
2
16192651 (2)
histidine
10.18
3
19029036 (1), 17352366 (1)
cardiolipin
4.27
3
11204589 (1), 7646462 (1)
glucose
1.10
1
16402205 (1)
fibrinogen
0.00
5
18515569 (1), 1452335 (1), 8165617 (1)
nacl
0.00
2
12228288 (1)
cholesterol
0.00
7
18718667 (2), 18721807 (1), 19026761 (1)
zinc
0.00
6
18855541 (3)
tyrosine
0.00
5
17352366 (1), 17398321 (1), 18805611 (1)
About this table
Transcripts for CFH(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000186 Sigma-Aldrich siRNA for CFH Sigma-Aldrich shRNA for CFH Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000186 NM_001014975
REFSEQ mRNAs for CFH gene (2 alternative transcripts): NM_000186.3 NM_001014975.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000186 NM_001014975
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000186                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000186                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000186  
Additional cDNA sequence: AK091797.1 AK225649.1 AK226113.1 AK291395.1 BC012610.1 BC037285.2 BC073982.1 BC110643.1 BC142699.1 CR598844.1 CR601432.1 CR616715.1 M12383.1 M17517.1 M65294.1 X04697.1 X07523.1 Y00716.1
20 DOTS entries : DT.100807064 DT.87015918 DT.91986300 DT.95212002 DT.121453969 DT.121453952 DT.95212008 DT.92463764 DT.92463753 DT.92463775 DT.121454010 DT.40303550 DT.100736629 DT.100828419 DT.100828427 DT.121453935 DT.91854819 DT.99942217 DT.92463758 DT.92463780
24/74 AceView cDNA sequences (see all 74
):BI492778 BM708539 BU730835 W76166 N40585 W72541 N38969 AW021849 BX501182 H42002 H42003 H64033 N21984 AV682117 H63986 N71188 AV685866 AA194256 BM955641 AI476438 AI922771 BE771618 AW181912 AI301649
highest scoring ESTs for CFH :AA425660 AA625237 AA705945 AA953249 AI038982 AI086285 AI123540 AI128250 AI142452 AI151165
Unigene Cluster for CFH: Complement factor H Hs.363396 [show with all ESTs ] Unigene Representative Sequence: AK226113 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for CFH (see all 6
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 SP1 :                         -                     SP2 :           -               -                     SP3 :                         -   -   -                 SP4 :                                             SP5 :                                            
About this scheme ECgene alternative splicing isoforms for CFH 4 Ensembl transcripts including schematic representations : ENST00000367429
ENST00000359637
ENST00000391986
ENST00000367428
Expression for CFH
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CFH expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CFH 1 / 2 / 3
6 probe-sets matching CFH gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGGGATGGGSOURCE GeneReport for Unigene cluster: Hs.363396 Expression variation in blood from EXPOLDB for CFH
UniProtKB/Swiss-Prot: CFAH_HUMAN, P08603 Tissue specificity : Expressed by the liver and secreted in plasma
Orthologs for CFH
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CFH gene from 5/6 species (see all 6
)
About this table Species with no ortholog for CFH ENSEMBL Gene Tree for CFH Paralogs for CFH (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CFH gene CFHR4 2 F13B 2 CFHR2 2 CFHR5 2 CFHR3 2 CFHR1 2
SNPs/Variants for CFH (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CFH (up to first 250kb)
Disorders & Mutations for CFH
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 134370 UniProtKB/Swiss-Prot: CFAH_HUMAN, P08603
Genetic variations in CFH are associated with basal laminar drusen [MIM:126700]; alsoknown as drusen of Bruch membrane or cuticular drusen or grouped early adult-onset drusen. Drusenare extracellular deposits that accumulate below the retinal pigment epithelium on Bruch membrane.Basal laminar drusen refers to an early adult-onset drusen phenotype that shows a pattern ofuniform small, slightly raised yellow subretinal nodules randomly scattered in the macula. Inlater stages, these drusen often become more numerous, with clustered groups of drusen scatteredthroughout the retina. In time these small basal laminar drusen may expand and ultimately lead toa serous pigment epithelial detachment of the macula that may result in vision loss Defects in CFH are the cause of complement factor H deficiency (CFH deficiency)[MIM:609814]. CFH deficiency determines uncontrolled activation of the alternative complementpathway with consumption of C3 and often other terminal complement components. It is associatedwith a number of renal diseases with variable clinical presentation and progression, includingmembranoproliferative glomerulonephritis and atypical hemolytic uremic syndrome. CFH deficiencypatients may show increased susceptibility to meningococcal infections Defects in CFH are a cause of hemolytic-uremic syndrome (HUS) [MIM:235400]. HUS is amicrovasculature disorder leading to microangiopathic hemolytic anemia associated with distortederythrocytes ('burr cells'), thrombocytopenia, and acute renal failure. Both dominant andrecessive modes of inheritance have been reported. Most cases of HUS are associated with epidemicsof diarrhea caused by verocytotoxin-producing bacteria, but atypical cases of HUS not associatedwith diarrhea (aHUS) also occur Genetic variation in CFH is associated with age-related macular degeneration type 4(ARMD4) [MIM:610698]. ARMD is a multifactorial eye disease and the most common cause ofirreversible vision loss in the developed world. In most patients, the disease is manifest asophthalmoscopically visible yellowish accumulations of protein and lipid (known as drusen) thatlie beneath the retinal pigment epithelium and within an elastin-containing structure known asBruch membrane
10/45 Novoseek disease relationships for CFH gene (see all 45
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
uremic syndrome
88.76
43
17517971 (2), 16362720 (2), 17548524 (2), 16470555 (2) (see all 31 )
glomerulonephritis membranoproliferative
79.96
19
17785294 (1), 16023208 (1), 16299065 (1), 16936129 (1) (see all 14 )
drusen
77.98
18
18252232 (4), 18043728 (2), 17210858 (2), 17079491 (1) (see all 10 )
maculopathy age-related
74.44
10
18766990 (2), 18682806 (1), 16774956 (1), 17000705 (1) (see all 6 )
purpura thrombotic thrombocytopenic
69.27
16
12020532 (1), 1751375 (1), 10544747 (1), 14615110 (1) (see all 10 )
blindness
67.79
9
16905558 (1), 17785294 (1), 17339482 (1), 18252232 (1) (see all 7 )
anemia hemolytic microangiopathic
66.77
2
15800115 (1), 17526759 (1)
hemolytic-uremic syndrome
63.93
6
11446651 (2), 17022693 (1), 2024653 (1), 17526759 (1) (see all 5 )
choroidal neovascularization
60.18
4
18682806 (2), 18515569 (1), 17995985 (1)
spirochetes disease
55.37
2
18706858 (1), 16622245 (1)
About this table GeneTests: CFH Dense Deposit Disease / Membranoproliferative Glomerulonephritis Type II Human Gene Mutation Database : CFH Genetic Association Database: CFH Human Genome Epidemiology Navigator: CFH (150 documents)
Medical News for CFH (Possibly Related Articles in
Doctor's Guide )
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Publications for CFH (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/439 PubMed articles for CFH gene (see all 439
): Complement factor H mutations and gene polymorphisms in haemolytic uraemic syndrome: the C-257T, the A2089G and the G2881T polymorphisms are strongly associated with the disease. (PubMed id 14583443) 1, 3, 4, 6 Caprioli J.... Noris M. (2003) Complement factor H gene mutation associated with autosomal recessive atypical hemolytic uremic syndrome. (PubMed id 10577907) 1, 3, 4, 6 Ying L.... Landau D. (1999) A common haplotype in the complement regulatory gene factor H (HF1/CFH) predisposes individuals to age-related macular degeneration. (PubMed id 15870199) 1, 3, 4, 6 Hageman G.S.... Allikmets R. (2005) Complement factor H polymorphism and age-related macular degeneration. (PubMed id 15761121) 3, 4, 6 Edwards A.O....Farrer L.A. (2005) Complement factor H variant increases the risk of age-related macular degeneration. (PubMed id 15761120) 3, 4, 6 Haines J.L.... Pericak-Vance M.A. (2005) Complement factor H polymorphism in age-related macular degeneration. (PubMed id 15761122) 3, 4, 6 Klein R.J.... Hoh J. (2005) Strong association of the Y402H variant in complement factor H at 1q32 with susceptibility to age-related macular degeneration. (PubMed id 15895326) 3, 4, 6 Zareparsi S.... Swaroop A. (2005) Haemolytic uraemic syndrome and mutations of the factor H gene: a registry-based study of German speaking countries. (PubMed id 12960213) 3, 4, 6 Neumann H.P.H....Zipfel P.F. (2003) The complete amino acid sequence of human complement factor H. (PubMed id 2963625) 2, 3, 4 Ripoche J....Sim R.B. (1988) Variations in the complement regulatory genes factor H (CFH) and factor H related 5 (CFHR5) are associated with membranoproliferative glomerulonephritis type II (dense deposit disease). (PubMed id 16299065) 1, 3, 6 Abrera-Abeleda M.A....Smith R.J. (2006)
Search for CFH
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Genome Databases showing CFH
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CFH
(According to HUGE )
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--
Specialized Databases showing CFH (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
ATLAS Chromosomes in Cancer entry for CFH Genetics and Cytogenetics in Oncology and Haematology CFHbase http://bioinf.uta.fi/CFHbase/ GeneReviews http://www.genetests.org/query?gene=CFH SeattleSNPs http://pga.gs.washington.edu/data/cfh/
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-- Services for CFH (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CFH:
Search Tocris compounds for CFH
Antibodies for CFH
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009