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Aliases for CFAP70 Gene

Aliases for CFAP70 Gene

  • Cilia And Flagella Associated Protein 70 2 3 5
  • Tetratricopeptide Repeat Protein 18 3 4
  • Tetratricopeptide Repeat Domain 18 2 3
  • TPR Repeat Protein 18 3 4
  • TTC18 3 4
  • Tetratricopeptide Repeat-Containing Protein (LOC118491) 3
  • Cilia- And Flagella-Associated Protein 70 3

External Ids for CFAP70 Gene

Previous HGNC Symbols for CFAP70 Gene

  • TTC18

Summaries for CFAP70 Gene

GeneCards Summary for CFAP70 Gene

CFAP70 (Cilia And Flagella Associated Protein 70) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP70 Gene

Genomics for CFAP70 Gene

Regulatory Elements for CFAP70 Gene

Enhancers for CFAP70 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G073261 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.4 +98.6 98631 2.7 FOXA2 PKNOX1 ARNT SIN3A ARID4B FEZF1 ZNF2 YY1 ZNF766 FOS NUDT13 CFAP70 ENSG00000233144 RNU6-883P USP54 ENSG00000227540 GC10P073280
GH10G073584 1.6 Ensembl ENCODE dbSUPER 21.3 -225.3 -225277 2.9 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 CBX5 NUDT13 CFAP70 USP54 RNU6-883P ENSG00000272630 PPP3CB PPP3CB-AS1 SYNPO2L GC10P073587 GC10P073575
GH10G073624 1.4 ENCODE dbSUPER 22.2 -264.8 -264814 2.6 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 NUDT13 CFAP70 ECD DNAJC9 AP3M1 ZSWIM8 ENSG00000272791 USP54 GC10P073609
GH10G073493 1.1 ENCODE 26.7 -134.2 -134239 3.5 HDGF PKNOX1 CREB3L1 ARNT AGO1 ARID4B SIN3A ZNF2 YY1 ZNF143 CFAP70 ECD AP3M1 ZSWIM8 RNU6-883P USP54 NUDT13 PPP3CB-AS1 MSS51
GH10G073243 1.4 ENCODE dbSUPER 20.4 +114.8 114831 5.5 HDGF HNRNPUL1 PKNOX1 CREB3L1 ARNT AGO1 ZFP64 WRNIP1 ARID4B SIN3A NUDT13 CFAP70 ENSG00000233144 DNAJC9-AS1 PIR34636
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CFAP70 on UCSC Golden Path with GeneCards custom track

Genomic Location for CFAP70 Gene

Chromosome:
10
Start:
73,253,758 bp from pter
End:
73,361,064 bp from pter
Size:
107,307 bases
Orientation:
Minus strand

Genomic View for CFAP70 Gene

Genes around CFAP70 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFAP70 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFAP70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP70 Gene

Proteins for CFAP70 Gene

  • Protein details for CFAP70 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0N1-CFA70_HUMAN
    Recommended name:
    Cilia- and flagella-associated protein 70
    Protein Accession:
    Q5T0N1
    Secondary Accessions:
    • C9JIZ9
    • Q5T0M4
    • Q5T0M9
    • Q5T0N0
    • Q69YH9
    • Q8IYZ8
    • Q8N7D5
    • Q8NI30
    • Q8NI31

    Protein attributes for CFAP70 Gene

    Size:
    1121 amino acids
    Molecular mass:
    125721 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAM20909.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305}; Sequence=AAM20910.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305}; Sequence=BAC05358.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAI15293.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15294.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15295.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15296.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CFAP70 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP70 Gene

Post-translational modifications for CFAP70 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CFAP70 Gene

Domains & Families for CFAP70 Gene

Gene Families for CFAP70 Gene

Protein Domains for CFAP70 Gene

Suggested Antigen Peptide Sequences for CFAP70 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5T0N1

UniProtKB/Swiss-Prot:

CFA70_HUMAN :
  • Belongs to the CFAP70 family.
Family:
  • Belongs to the CFAP70 family.
genes like me logo Genes that share domains with CFAP70: view

Function for CFAP70 Gene

Gene Ontology (GO) - Molecular Function for CFAP70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with CFAP70: view
genes like me logo Genes that share phenotypes with CFAP70: view

Animal Model Products

miRNA for CFAP70 Gene

miRTarBase miRNAs that target CFAP70

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CFAP70 Gene

Localization for CFAP70 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CFAP70 Gene

Cell projection, cilium.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CFAP70 gene
Compartment Confidence
extracellular 5
nucleus 2
cytosol 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for CFAP70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005929 cilium IEA --
GO:0042995 cell projection IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with CFAP70: view

Pathways & Interactions for CFAP70 Gene

SuperPathways for CFAP70 Gene

No Data Available

Interacting Proteins for CFAP70 Gene

Gene Ontology (GO) - Biological Process for CFAP70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with CFAP70: view

No data available for Pathways by source and SIGNOR curated interactions for CFAP70 Gene

Drugs & Compounds for CFAP70 Gene

No Compound Related Data Available

Transcripts for CFAP70 Gene

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP70 Gene

No ASD Table

Relevant External Links for CFAP70 Gene

GeneLoc Exon Structure for
CFAP70
ECgene alternative splicing isoforms for
CFAP70

Expression for CFAP70 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFAP70 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CFAP70 Gene

This gene is overexpressed in Plasma (49.2), Monocytes (10.5), and Heart (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CFAP70 Gene



Protein tissue co-expression partners for CFAP70 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CFAP70 Gene:

CFAP70
genes like me logo Genes that share expression patterns with CFAP70: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFAP70 Gene

Orthologs for CFAP70 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP70 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC18 35 34
  • 99.7 (n)
OneToOne
dog
(Canis familiaris)
Mammalia TTC18 34 35
  • 90.83 (n)
cow
(Bos Taurus)
Mammalia TTC18 34
  • 88.54 (n)
mouse
(Mus musculus)
Mammalia Ttc18 35 34
  • 81.62 (n)
OneToOne
Cfap70 16
rat
(Rattus norvegicus)
Mammalia Ttc18 34
  • 80.91 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 73 (a)
OneToMany
-- 35
  • 70 (a)
OneToMany
-- 35
  • 66 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia TTC18 35
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves TTC18 35 34
  • 64.93 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTC18 35
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ttc18 34
  • 61.3 (n)
Str.13839 34
zebrafish
(Danio rerio)
Actinopterygii si:dkey-254e1.1 34
  • 56.1 (n)
TTC18 35
  • 47 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13169 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 42 (a)
OneToOne
Species where no ortholog for CFAP70 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CFAP70 Gene

ENSEMBL:
Gene Tree for CFAP70 (if available)
TreeFam:
Gene Tree for CFAP70 (if available)

Paralogs for CFAP70 Gene

No data available for Paralogs for CFAP70 Gene

Variants for CFAP70 Gene

Sequence variations from dbSNP and Humsavar for CFAP70 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000026344 -- 73,304,500(+) AATTA(C/T)GTGTA intron-variant
rs1000050514 -- 73,289,288(+) TTATT(A/C)TTATT intron-variant
rs1000098722 -- 73,296,600(+) GACCA(C/G)CAGTC intron-variant
rs1000173975 -- 73,261,578(+) AGAAA(A/T)GAGCC intron-variant
rs1000183239 -- 73,269,471(+) CCTTC(C/T)TTTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CFAP70 Gene

Variant ID Type Subtype PubMed ID
esv3578975 CNV loss 25503493
nsv825467 CNV loss 20364138
nsv831911 CNV loss 17160897

Variation tolerance for CFAP70 Gene

Residual Variation Intolerance Score: 9.27% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.98; 87.35% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CFAP70 Gene

Human Gene Mutation Database (HGMD)
CFAP70
SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFAP70

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CFAP70 Gene

Disorders for CFAP70 Gene

Relevant External Links for CFAP70

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFAP70

No disorders were found for CFAP70 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFAP70 Gene

Publications for CFAP70 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 3 64
  3. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3 64

Products for CFAP70 Gene

Sources for CFAP70 Gene

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