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Aliases for CFAP70 Gene

Aliases for CFAP70 Gene

  • Cilia And Flagella Associated Protein 70 2 3
  • Tetratricopeptide Repeat Protein 18 3 4
  • Tetratricopeptide Repeat Domain 18 2 3
  • TPR Repeat Protein 18 3 4
  • TTC18 3 4
  • Tetratricopeptide Repeat-Containing Protein (LOC118491) 3
  • Cilia- And Flagella-Associated Protein 70 3

External Ids for CFAP70 Gene

Previous HGNC Symbols for CFAP70 Gene

  • TTC18

Summaries for CFAP70 Gene

GeneCards Summary for CFAP70 Gene

CFAP70 (Cilia And Flagella Associated Protein 70) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP70 Gene

Genomics for CFAP70 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CFAP70 Gene

Start:
73,253,758 bp from pter
End:
73,359,745 bp from pter
Size:
105,988 bases
Orientation:
Minus strand

Genomic View for CFAP70 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CFAP70 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP70 Gene

No data available for Regulatory Elements for CFAP70 Gene

Proteins for CFAP70 Gene

  • Protein details for CFAP70 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T0N1-CFA70_HUMAN
    Recommended name:
    Cilia- and flagella-associated protein 70
    Protein Accession:
    Q5T0N1
    Secondary Accessions:
    • C9JIZ9
    • Q5T0M4
    • Q5T0M9
    • Q5T0N0
    • Q69YH9
    • Q8IYZ8
    • Q8N7D5
    • Q8NI30
    • Q8NI31

    Protein attributes for CFAP70 Gene

    Size:
    1121 amino acids
    Molecular mass:
    125721 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAM20909.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305}; Sequence=AAM20910.1; Type=Frameshift; Positions=Several; Evidence={ECO:0000305}; Sequence=BAC05358.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAI15293.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15294.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15295.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305}; Sequence=CAI15296.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CFAP70 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP70 Gene

Proteomics data for CFAP70 Gene at MOPED

Post-translational modifications for CFAP70 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CFAP70 Gene

No data available for DME Specific Peptides for CFAP70 Gene

Domains for CFAP70 Gene

Gene Families for CFAP70 Gene

HGNC:
  • TTC :Tetratricopeptide (TTC) repeat domain containing

Protein Domains for CFAP70 Gene

Graphical View of Domain Structure for InterPro Entry

Q5T0N1

UniProtKB/Swiss-Prot:

CFA70_HUMAN :
  • Q5T0N1
Family:
  • Belongs to the CFAP70 family.
Similarity:
  • Contains 8 TPR repeats.
genes like me logo Genes that share domains with CFAP70: view

No data available for Suggested Antigen Peptide Sequences for CFAP70 Gene

Function for CFAP70 Gene

Gene Ontology (GO) - Molecular Function for CFAP70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CFAP70: view

Phenotypes for CFAP70 Gene

GenomeRNAi human phenotypes for CFAP70:
genes like me logo Genes that share phenotypes with CFAP70: view

miRNA for CFAP70 Gene

miRTarBase miRNAs that target CFAP70

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for CFAP70 Gene

Localization for CFAP70 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CFAP70 Gene

Cell projection, cilium.

Gene Ontology (GO) - Cellular Components for CFAP70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005929 cilium IEA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with CFAP70: view

No data available for Subcellular locations from COMPARTMENTS for CFAP70 Gene

Pathways for CFAP70 Gene

SuperPathways for CFAP70 Gene

No Data Available

Interacting Proteins for CFAP70 Gene

Gene Ontology (GO) - Biological Process for CFAP70 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with CFAP70: view

No data available for Pathways by source for CFAP70 Gene

Transcripts for CFAP70 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP70

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CFAP70
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP70 Gene

No ASD Table

Relevant External Links for CFAP70 Gene

GeneLoc Exon Structure for
CFAP70
ECgene alternative splicing isoforms for
CFAP70

Expression for CFAP70 Gene

mRNA expression in normal human tissues for CFAP70 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CFAP70 Gene

genes like me logo Genes that share expressions with CFAP70: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CFAP70 Gene

Orthologs for CFAP70 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP70 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TTC18 35
  • 99.7 (n)
  • 99.29 (a)
TTC18 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TTC18 35
  • 88.54 (n)
  • 87.14 (a)
dog
(Canis familiaris)
Mammalia TTC18 35
  • 90.83 (n)
  • 88.98 (a)
TTC18 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ttc18 35
  • 81.62 (n)
  • 81.92 (a)
Ttc18 16
Ttc18 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TTC18 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
-- 36
  • 66 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Ttc18 35
  • 80.91 (n)
  • 82.44 (a)
chicken
(Gallus gallus)
Aves TTC18 35
  • 64.93 (n)
  • 58.32 (a)
TTC18 36
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TTC18 36
  • 63 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.13839 35
ttc18 35
  • 61.3 (n)
  • 57.02 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13169 35
zebrafish
(Danio rerio)
Actinopterygii si:dkey-254e1.1 35
  • 56.1 (n)
  • 50.43 (a)
TTC18 36
  • 47 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 42 (a)
OneToOne
Species with no ortholog for CFAP70:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CFAP70 Gene

ENSEMBL:
Gene Tree for CFAP70 (if available)
TreeFam:
Gene Tree for CFAP70 (if available)

Paralogs for CFAP70 Gene

No data available for Paralogs for CFAP70 Gene

Variants for CFAP70 Gene

Sequence variations from dbSNP and Humsavar for CFAP70 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs963035 -- 73,319,323(-) aagaa(A/G)tttag intron-variant
rs963036 -- 73,318,897(-) AAAAT(A/G)TATTG intron-variant
rs1537273 -- 73,355,203(-) ctcgc(C/T)tgctg intron-variant
rs2183902 -- 73,319,522(-) tatat(G/T)caagt intron-variant
rs2183903 -- 73,332,928(-) CTTAT(A/G)GTAGC intron-variant

Relevant External Links for CFAP70 Gene

HapMap Linkage Disequilibrium report
CFAP70

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CFAP70 Gene

Disorders for CFAP70 Gene

No disorders were found for CFAP70 Gene.

No data available for UniProtKB/Swiss-Prot for CFAP70 Gene

Publications for CFAP70 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease. (PMID: 16385451) Grupe A. … Goate A. (Am. J. Hum. Genet. 2006) 3
  3. Large-scale proteomics and phosphoproteomics of urinary exosomes. (PMID: 19056867) Gonzales P.A. … Knepper M.A. (J. Am. Soc. Nephrol. 2009) 3
  4. The DNA sequence and comparative analysis of human chromosome 10. (PMID: 15164054) Deloukas P. … Rogers J. (Nature 2004) 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for CFAP70 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CFAP70
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP70
    • Block miRNA regulation of CFAP70 using miScript Target Protectors

    Sources for CFAP70 Gene

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