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Aliases for CFAP61 Gene

Aliases for CFAP61 Gene

  • Cilia And Flagella Associated Protein 61 2 3
  • C20orf26 3 4
  • Cilia- And Flagella-Associated Protein 61 3
  • Chromosome 20 Open Reading Frame 26 2
  • Hypothetical Protein LOC26074 2
  • DJ1002M8.3 3
  • DJ1178H5.4 3
  • CaM-IP3 3

External Ids for CFAP61 Gene

Previous Symbols for CFAP61 Gene

  • C20orf26

Summaries for CFAP61 Gene

GeneCards Summary for CFAP61 Gene

CFAP61 (Cilia And Flagella Associated Protein 61) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP61 Gene

Genomics for CFAP61 Gene

Genomic Location for CFAP61 Gene

Start:
20,052,514 bp from pter
End:
20,360,702 bp from pter
Size:
308,189 bases
Orientation:
Plus strand

Genomic View for CFAP61 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CFAP61 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP61 Gene

No data available for Regulatory Elements for CFAP61 Gene

Proteins for CFAP61 Gene

  • Protein details for CFAP61 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NHU2-CFA61_HUMAN
    Recommended name:
    Cilia- and flagella-associated protein 61
    Protein Accession:
    Q8NHU2
    Secondary Accessions:
    • A6NHA1
    • Q5JXV4
    • Q5TE18
    • Q8N5R9
    • Q96M59
    • Q9BQL2
    • Q9H127
    • Q9H128
    • Q9NQH4
    • Q9UFV8
    • Q9Y4V7

    Protein attributes for CFAP61 Gene

    Size:
    1237 amino acids
    Molecular mass:
    141349 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI42114.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for CFAP61 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP61 Gene

Proteomics data for CFAP61 Gene at MOPED

Post-translational modifications for CFAP61 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CFAP61 Gene

Domains for CFAP61 Gene

genes like me logo Genes that share domains with CFAP61: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CFAP61 Gene

Function for CFAP61 Gene

Gene Ontology (GO) - Molecular Function for CFAP61 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016491 oxidoreductase activity --
genes like me logo Genes that share ontologies with CFAP61: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CFAP61 Gene

Localization for CFAP61 Gene

No data available for Gene Ontology (GO) - Cellular Components for CFAP61 Gene

Pathways for CFAP61 Gene

SuperPathways for CFAP61 Gene

No Data Available

Interacting Proteins for CFAP61 Gene

Selected Interacting proteins: Q8NHU2-CFA61_HUMAN for CFAP61 Gene via MINT

Symbol External ID(s) Details
--

Gene Ontology (GO) - Biological Process for CFAP61 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0055114 oxidation-reduction process --
genes like me logo Genes that share ontologies with CFAP61: view

No data available for Pathways by source for CFAP61 Gene

Transcripts for CFAP61 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP61 Gene

No ASD Table

Relevant External Links for CFAP61 Gene

GeneLoc Exon Structure for
CFAP61
ECgene alternative splicing isoforms for
CFAP61

Expression for CFAP61 Gene

mRNA expression in normal human tissues for CFAP61 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CFAP61 Gene

genes like me logo Genes that share expressions with CFAP61: view

Orthologs for CFAP61 Gene

This gene was present in the common ancestor of animals.

Orthologs for CFAP61 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C20orf26 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C13H20orf26 36
  • 82.39 (n)
  • 80.5 (a)
C20orf26 37
  • 80 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C20orf26 37
  • 85 (a)
OneToOne
C24H20orf26 36
  • 87.25 (n)
  • 85.45 (a)
mouse
(Mus musculus)
Mammalia 4930529M08Rik 16
4930529M08Rik 37
  • 77 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C20orf26 37
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 75 (a)
OneToMany
-- 37
  • 60 (a)
OneToMany
-- 37
  • 62 (a)
OneToMany
-- 37
  • 63 (a)
OneToMany
-- 37
  • 48 (a)
OneToMany
-- 37
  • 67 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1311519 36
  • 80.67 (n)
  • 77.7 (a)
chicken
(Gallus gallus)
Aves C20orf26 37
  • 55 (a)
OneToOne
C3H20ORF26 36
  • 66.93 (n)
  • 60.59 (a)
lizard
(Anolis carolinensis)
Reptilia C20orf26 37
  • 62 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia c20orf26 36
  • 63.72 (n)
  • 60.52 (a)
zebrafish
(Danio rerio)
Actinopterygii C20H20orf26 (2 of 2) 37
  • 48 (a)
OneToMany
C20orf26 (1 of 2) 37
  • 42 (a)
OneToMany
si:zfos-223e1.2 36
  • 57.13 (n)
  • 50 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG30268 37
  • 18 (a)
OneToMany
CG30275 37
  • 18 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 43 (a)
OneToOne
Species with no ortholog for CFAP61:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CFAP61 Gene

ENSEMBL:
Gene Tree for CFAP61 (if available)
TreeFam:
Gene Tree for CFAP61 (if available)

Paralogs for CFAP61 Gene

No data available for Paralogs for CFAP61 Gene

Variants for CFAP61 Gene

Sequence variations from dbSNP and Humsavar for CFAP61 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs200180 -- 20,065,278(+) accta(C/G)taggc intron-variant
rs200181 -- 20,067,284(+) ACATT(G/T)AAAAA intron-variant
rs200182 -- 20,069,055(+) tctat(A/T)tatac intron-variant
rs200183 -- 20,069,753(+) ttctc(A/G)ttctt intron-variant
rs200184 -- 20,071,246(+) AATGA(C/T)GGCGG intron-variant

Relevant External Links for CFAP61 Gene

HapMap Linkage Disequilibrium report
CFAP61

No data available for Structural Variations from Database of Genomic Variants (DGV) for CFAP61 Gene

Disorders for CFAP61 Gene

No disorders were found for CFAP61 Gene.

No data available for UniProtKB/Swiss-Prot for CFAP61 Gene

Publications for CFAP61 Gene

  1. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. A conserved CaM- and radial spoke associated complex mediates regulation of flagellar dynein activity. (PMID: 17967944) Dymek E.E. … Smith E.F. (J. Cell Biol. 2007) 2 3
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for CFAP61 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CFAP61
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP61
    • Block miRNA regulation of CFAP61 using miScript Target Protectors

    Sources for CFAP61 Gene

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