Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CFAP58-AS1 Gene

Subcategory (RNA class) for CFAP58-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CFAP58-AS1 Gene

  • CFAP58 Antisense RNA 1 (Head To Head) 2 3 5
  • CCDC147 Antisense RNA 1 (Head To Head) 2 3
  • CCDC147 Antisense RNA 1 2
  • CCDC147-AS1 3

External Ids for CFAP58-AS1 Gene

Previous HGNC Symbols for CFAP58-AS1 Gene

  • CCDC147-AS1

Summaries for CFAP58-AS1 Gene

GeneCards Summary for CFAP58-AS1 Gene

CFAP58-AS1 (CFAP58 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP58-AS1 Gene

Genomics for CFAP58-AS1 Gene

Regulatory Elements for CFAP58-AS1 Gene

Enhancers for CFAP58-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G104316 2 FANTOM5 Ensembl ENCODE dbSUPER 12.3 +24.8 24804 24.8 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766 ITPRIP GSTO2 CFAP58 SFR1 CFAP58-AS1 PDCD11 ENSG00000260461 GSTO1 SLK LOC101927472
GH10G104303 1.4 Ensembl ENCODE dbSUPER 12.6 +47.3 47290 6.1 HDAC1 ATF1 ARNT ZSCAN4 FEZF1 BMI1 RAD21 ZBTB40 YY1 SCRT2 GSTO2 CFAP58 CFAP58-AS1 ITPRIP GSTO1 GC10P104302 ENSG00000270075
GH10G104296 1.3 Ensembl ENCODE dbSUPER 12.2 +53.8 53826 6.0 SIN3A BRCA1 RAD21 ZNF366 GATA2 ZSCAN5C FOS ZNF263 ZNF654 USF2 GSTO2 CFAP58 CFAP58-AS1 ITPRIP GSTO1 GC10P104302
GH10G104249 1.4 ENCODE dbSUPER 10.7 +99.9 99858 7.6 FOXA2 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 GSTO2 ENSG00000260461 GSTO1 PDCD11 CFAP58 CFAP58-AS1 GC10M104249 MIR4482
GH10G104309 1.1 Ensembl ENCODE dbSUPER 12.4 +42.8 42824 2.5 ZNF146 GATA2 POLR2A BHLHE40 RAD21 PRDM1 SUPT5H GSTO2 ITPRIP CFAP58 CFAP58-AS1 ENSG00000270075 GC10P104302
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CFAP58-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CFAP58-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000033040 175 801 HDAC1 ATF1 RB1 TBL1XR1 ARID4B SIN3A BMI1 RAD21 GLIS2 EGR1

Genomic Location for CFAP58-AS1 Gene

Chromosome:
10
Start:
104,351,301 bp from pter
End:
104,353,575 bp from pter
Size:
2,275 bases
Orientation:
Minus strand

Genomic View for CFAP58-AS1 Gene

Genes around CFAP58-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFAP58-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFAP58-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP58-AS1 Gene

Proteins for CFAP58-AS1 Gene

Post-translational modifications for CFAP58-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFAP58-AS1 Gene

Domains & Families for CFAP58-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFAP58-AS1 Gene

Function for CFAP58-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFAP58-AS1 Gene

Localization for CFAP58-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CFAP58-AS1 Gene

Pathways & Interactions for CFAP58-AS1 Gene

SuperPathways for CFAP58-AS1 Gene

No Data Available

Interacting Proteins for CFAP58-AS1 Gene

Gene Ontology (GO) - Biological Process for CFAP58-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFAP58-AS1 Gene

Transcripts for CFAP58-AS1 Gene

mRNA/cDNA for CFAP58-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP58-AS1 Gene

No ASD Table

Relevant External Links for CFAP58-AS1 Gene

GeneLoc Exon Structure for
CFAP58-AS1
ECgene alternative splicing isoforms for
CFAP58-AS1

Expression for CFAP58-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFAP58-AS1 Gene

genes like me logo Genes that share expression patterns with CFAP58-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFAP58-AS1 Gene

Orthologs for CFAP58-AS1 Gene

Evolution for CFAP58-AS1 Gene

ENSEMBL:
Gene Tree for CFAP58-AS1 (if available)
TreeFam:
Gene Tree for CFAP58-AS1 (if available)

No data available for Orthologs for CFAP58-AS1 Gene

Paralogs for CFAP58-AS1 Gene

No data available for Paralogs for CFAP58-AS1 Gene

Variants for CFAP58-AS1 Gene

Sequence variations from dbSNP and Humsavar for CFAP58-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000560457 -- 104,350,986(+) AGGGC(C/T)CTCTA intron-variant, downstream-variant-500B
rs1001615557 -- 104,352,725(+) GAGAA(A/T)TAGAG intron-variant, upstream-variant-2KB
rs1001646823 -- 104,352,321(+) TTGGT(A/G)AGTAC intron-variant, upstream-variant-2KB
rs1002335994 -- 104,352,346(+) AGGCT(A/C)CTGGG intron-variant, upstream-variant-2KB
rs1002612293 -- 104,354,098(+) ATTTG(G/T)GTGGA intron-variant, upstream-variant-2KB

Relevant External Links for CFAP58-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFAP58-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CFAP58-AS1 Gene

Disorders for CFAP58-AS1 Gene

Relevant External Links for CFAP58-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFAP58-AS1

No disorders were found for CFAP58-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFAP58-AS1 Gene

Publications for CFAP58-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for CFAP58-AS1 Gene

Sources for CFAP58-AS1 Gene

Content
Loading form....