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Aliases for CFAP47 Gene

Aliases for CFAP47 Gene

  • Cilia And Flagella Associated Protein 47 2 3
  • CXorf22 3 4
  • Calponin Homology Domain-Containing Protein 2 3
  • Calponin Homology Domain Containing 2 2
  • Chromosome X Open Reading Frame 59 2
  • Chromosome X Open Reading Frame 22 2
  • Chromosome X Open Reading Frame 30 2
  • CXorf30 3
  • CXorf59 3
  • CHDC2 3

External Ids for CFAP47 Gene

Previous Symbols for CFAP47 Gene

  • CXorf59
  • CXorf22
  • CXorf30
  • CHDC2

Summaries for CFAP47 Gene

Entrez Gene Summary for CFAP47 Gene

  • While this gene is well-supported by transcript data, no functional information on its protein product is currently available. [provided by RefSeq, Dec 2009]

GeneCards Summary for CFAP47 Gene

CFAP47 (Cilia And Flagella Associated Protein 47) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP47 Gene

Genomics for CFAP47 Gene

Genomic Location for CFAP47 Gene

Start:
36,046,936 bp from pter
End:
36,145,070 bp from pter
Size:
98,135 bases
Orientation:
Plus strand

Genomic View for CFAP47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CFAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP47 Gene

No data available for Regulatory Elements for CFAP47 Gene

Proteins for CFAP47 Gene

  • Protein details for CFAP47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZTR5-CX022_HUMAN
    Recommended name:
    Uncharacterized protein CXorf22
    Protein Accession:
    Q6ZTR5
    Secondary Accessions:
    • Q5JRM8
    • Q8N6X8

    Protein attributes for CFAP47 Gene

    Size:
    976 amino acids
    Molecular mass:
    110411 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CFAP47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP47 Gene

Proteomics data for CFAP47 Gene at MOPED

Post-translational modifications for CFAP47 Gene

No Post-translational modifications

Other Protein References for CFAP47 Gene

No data available for DME Specific Peptides for CFAP47 Gene

Domains for CFAP47 Gene

Protein Domains for CFAP47 Gene

ProtoNet:
genes like me logo Genes that share domains with CFAP47: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CFAP47 Gene

Function for CFAP47 Gene

genes like me logo Genes that share phenotypes with CFAP47: view

miRNA for CFAP47 Gene

miRTarBase miRNAs that target CFAP47

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CFAP47 Gene

Localization for CFAP47 Gene

Gene Ontology (GO) - Cellular Components for CFAP47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CFAP47: view

Pathways for CFAP47 Gene

SuperPathways for CFAP47 Gene

No Data Available

Interacting Proteins for CFAP47 Gene

Gene Ontology (GO) - Biological Process for CFAP47 Gene

None

No data available for Pathways by source for CFAP47 Gene

Transcripts for CFAP47 Gene

mRNA/cDNA for CFAP47 Gene

(3) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP47 Gene

No ASD Table

Relevant External Links for CFAP47 Gene

GeneLoc Exon Structure for
CFAP47
ECgene alternative splicing isoforms for
CFAP47

Expression for CFAP47 Gene

mRNA expression in normal human tissues for CFAP47 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CFAP47 Gene

genes like me logo Genes that share expressions with CFAP47: view

Orthologs for CFAP47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHDC2 36
  • 95.67 (n)
  • 94.35 (a)
CXorf22 37
  • 97 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CXorf22 37
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CXorf22 37
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Chdc2 16
Gm7173 37
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CXorf22 37
  • 43 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CXorf22 37
  • 52 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC680813 36
  • 78.75 (n)
  • 71.67 (a)
chicken
(Gallus gallus)
Aves CXorf22 37
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CXorf22 37
  • 47 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 36 (a)
OneToOne
Species with no ortholog for CFAP47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CFAP47 Gene

ENSEMBL:
Gene Tree for CFAP47 (if available)
TreeFam:
Gene Tree for CFAP47 (if available)

Paralogs for CFAP47 Gene

No data available for Paralogs for CFAP47 Gene

Variants for CFAP47 Gene

Sequence variations from dbSNP and Humsavar for CFAP47 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2336367 -- 36,079,435(+) cttca(A/G)tcact intron-variant
rs2336368 -- 36,125,931(-) GTGTT(A/G)CACAT intron-variant
rs2336369 -- 36,125,637(-) AATTG(G/T)AAATC intron-variant
rs2336394 -- 36,129,436(-) TAATG(C/T)ATATA intron-variant
rs2336655 -- 36,140,231(+) TATGA(A/G)ACTCA intron-variant

Relevant External Links for CFAP47 Gene

HapMap Linkage Disequilibrium report
CFAP47
Locus Specific Mutation Databases (LSDB)
CHDC2

No data available for Structural Variations from Database of Genomic Variants (DGV) for CFAP47 Gene

Disorders for CFAP47 Gene

No disorders were found for CFAP47 Gene.

No data available for UniProtKB/Swiss-Prot for CFAP47 Gene

Publications for CFAP47 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. (PMID: 19377476) Tarpey P.S. … Stratton M.R. (Nat. Genet. 2009) 3

Products for CFAP47 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CFAP47
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP47
    • Block miRNA regulation of CFAP47 using miScript Target Protectors

    Sources for CFAP47 Gene

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