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Aliases for CFAP47 Gene

Aliases for CFAP47 Gene

  • Cilia And Flagella Associated Protein 47 2 3
  • CXorf22 3 4
  • CXorf30 3 4
  • CXorf59 3 4
  • CHDC2 3 4
  • Calponin Homology Domain-Containing Protein 2 3
  • Calponin Homology Domain Containing 2 2
  • Chromosome X Open Reading Frame 59 2
  • Chromosome X Open Reading Frame 22 2
  • Chromosome X Open Reading Frame 30 2

External Ids for CFAP47 Gene

Previous HGNC Symbols for CFAP47 Gene

  • CXorf59
  • CXorf22
  • CXorf30
  • CHDC2

Previous GeneCards Identifiers for CFAP47 Gene

  • GC0XP036046

Summaries for CFAP47 Gene

Entrez Gene Summary for CFAP47 Gene

  • While this gene is well-supported by transcript data, no functional information on its protein product is currently available. [provided by RefSeq, Dec 2009]

GeneCards Summary for CFAP47 Gene

CFAP47 (Cilia And Flagella Associated Protein 47) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP47 Gene

Genomics for CFAP47 Gene

Genomic Location for CFAP47 Gene

Chromosome:
X
Start:
35,919,734 bp from pter
End:
36,385,319 bp from pter
Size:
465,586 bases
Orientation:
Plus strand

Genomic View for CFAP47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CFAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP47 Gene

No data available for Regulatory Elements for CFAP47 Gene

Proteins for CFAP47 Gene

  • Protein details for CFAP47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZTR5-CFA47_HUMAN
    Recommended name:
    Cilia- and flagella-associated protein 47
    Protein Accession:
    Q6ZTR5
    Secondary Accessions:
    • A6PW82
    • B1ARL5
    • Q5JRM8
    • Q8N6X8
    • Q8N9S7

    Protein attributes for CFAP47 Gene

    Size:
    3102 amino acids
    Molecular mass:
    351950 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI01699.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI01701.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC04251.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CFAP47 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP47 Gene

Proteomics data for CFAP47 Gene at MOPED

Post-translational modifications for CFAP47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CFAP47 Gene

No data available for DME Specific Peptides for CFAP47 Gene

Domains & Families for CFAP47 Gene

Protein Domains for CFAP47 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CFAP47 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZTR5

UniProtKB/Swiss-Prot:

CFA47_HUMAN :
  • Contains 1 CH (calponin-homology) domain.
Domain:
  • Contains 1 CH (calponin-homology) domain.
genes like me logo Genes that share domains with CFAP47: view

No data available for Gene Families for CFAP47 Gene

Function for CFAP47 Gene

Gene Ontology (GO) - Molecular Function for CFAP47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CFAP47: view
genes like me logo Genes that share phenotypes with CFAP47: view

miRNA for CFAP47 Gene

miRTarBase miRNAs that target CFAP47

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP47

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CFAP47 Gene

Localization for CFAP47 Gene

Gene Ontology (GO) - Cellular Components for CFAP47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with CFAP47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CFAP47 Gene

Pathways & Interactions for CFAP47 Gene

SuperPathways for CFAP47 Gene

No Data Available

Interacting Proteins for CFAP47 Gene

Gene Ontology (GO) - Biological Process for CFAP47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFAP47 Gene

Drugs & Compounds for CFAP47 Gene

No Compound Related Data Available

Transcripts for CFAP47 Gene

mRNA/cDNA for CFAP47 Gene

(3) REFSEQ mRNAs :
(3) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP47

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP47 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16
SP1:
SP2: -

Relevant External Links for CFAP47 Gene

GeneLoc Exon Structure for
CFAP47
ECgene alternative splicing isoforms for
CFAP47

Expression for CFAP47 Gene

mRNA expression in normal human tissues for CFAP47 Gene

Protein differential expression in normal tissues from HIPED for CFAP47 Gene

This gene is overexpressed in Amniocyte (61.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CFAP47 Gene



genes like me logo Genes that share expression patterns with CFAP47: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CFAP47 Gene

Orthologs for CFAP47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CHDC2 35
  • 95.67 (n)
  • 94.35 (a)
CXorf22 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC680813 35
  • 78.75 (n)
  • 71.67 (a)
mouse
(Mus musculus)
Mammalia Chdc2 16
Gm7173 36
  • 66 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CXorf22 36
  • 69 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CXorf22 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CXorf22 36
  • 43 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CXorf22 36
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves CXorf22 36
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CXorf22 36
  • 47 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
OneToOne
Species with no ortholog for CFAP47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CFAP47 Gene

ENSEMBL:
Gene Tree for CFAP47 (if available)
TreeFam:
Gene Tree for CFAP47 (if available)

Paralogs for CFAP47 Gene

No data available for Paralogs for CFAP47 Gene

Variants for CFAP47 Gene

Sequence variations from dbSNP and Humsavar for CFAP47 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1344031 -- 36,167,152(+) tgttg(A/G)tctac intron-variant
rs1344032 -- 36,167,196(+) GCACT(A/G)TTTCT intron-variant
rs2336029 - 35,951,180(+) CTCAT(A/G)TGGTT missense, reference
rs2336367 -- 36,079,435(+) cttca(A/G)tcact intron-variant
rs2336368 -- 36,125,931(-) GTGTT(A/G)CACAT intron-variant

Relevant External Links for CFAP47 Gene

HapMap Linkage Disequilibrium report
CFAP47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CFAP47 Gene

Disorders for CFAP47 Gene

Relevant External Links for CFAP47

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFAP47
genes like me logo Genes that share disorders with CFAP47: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFAP47 Gene

Publications for CFAP47 Gene

  1. Quantitative gene profiling of long noncoding RNAs with targeted RNA sequencing. (PMID: 25751143) Clark M.B. … Dinger M.E. (Nat. Methods 2015) 67
  2. A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. (PMID: 19377476) Tarpey P.S. … Stratton M.R. (Nat. Genet. 2009) 67
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 67
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67

Products for CFAP47 Gene

Sources for CFAP47 Gene

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