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Aliases for CFAP47 Gene

Aliases for CFAP47 Gene

  • Cilia And Flagella Associated Protein 47 2 3
  • CXorf22 3 4
  • Calponin Homology Domain-Containing Protein 2 3
  • Calponin Homology Domain Containing 2 2
  • Chromosome X Open Reading Frame 59 2
  • Chromosome X Open Reading Frame 22 2
  • Chromosome X Open Reading Frame 30 2
  • CXorf30 3
  • CXorf59 3
  • CHDC2 3

External Ids for CFAP47 Gene

Previous HGNC Symbols for CFAP47 Gene

  • CXorf59
  • CXorf22
  • CXorf30
  • CHDC2

Summaries for CFAP47 Gene

Entrez Gene Summary for CFAP47 Gene

  • While this gene is well-supported by transcript data, no functional information on its protein product is currently available. [provided by RefSeq, Dec 2009]

GeneCards Summary for CFAP47 Gene

CFAP47 (Cilia And Flagella Associated Protein 47) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP47 Gene

Genomics for CFAP47 Gene

Genomic Location for CFAP47 Gene

36,046,936 bp from pter
36,145,070 bp from pter
98,135 bases
Plus strand

Genomic View for CFAP47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CFAP47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP47 Gene

No data available for Regulatory Elements for CFAP47 Gene

Proteins for CFAP47 Gene

  • Protein details for CFAP47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein CXorf22
    Protein Accession:
    Secondary Accessions:
    • Q5JRM8
    • Q8N6X8

    Protein attributes for CFAP47 Gene

    976 amino acids
    Molecular mass:
    110411 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CFAP47 Gene


neXtProt entry for CFAP47 Gene

Proteomics data for CFAP47 Gene at MOPED

Post-translational modifications for CFAP47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CFAP47 Gene

No data available for DME Specific Peptides for CFAP47 Gene

Domains for CFAP47 Gene

Protein Domains for CFAP47 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CFAP47: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFAP47 Gene

Function for CFAP47 Gene

genes like me logo Genes that share phenotypes with CFAP47: view

miRNA for CFAP47 Gene

miRTarBase miRNAs that target CFAP47

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP47

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for CFAP47 Gene

Localization for CFAP47 Gene

Gene Ontology (GO) - Cellular Components for CFAP47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with CFAP47: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for CFAP47 Gene

Pathways for CFAP47 Gene

SuperPathways for CFAP47 Gene

No Data Available

Interacting Proteins for CFAP47 Gene

Gene Ontology (GO) - Biological Process for CFAP47 Gene


No data available for Pathways by source for CFAP47 Gene

Transcripts for CFAP47 Gene

mRNA/cDNA for CFAP47 Gene

(3) Selected AceView cDNA sequences:
(3) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP47

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP47 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14a · 14b ^ 15 ^ 16
SP2: -

Relevant External Links for CFAP47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CFAP47 Gene

mRNA expression in normal human tissues for CFAP47 Gene

Protein differential expression in normal tissues for CFAP47 Gene

This gene is overexpressed in Amniocyte (61.3).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CFAP47 Gene

genes like me logo Genes that share expressions with CFAP47: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Expression partners for CFAP47 Gene

Orthologs for CFAP47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP47 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CHDC2 35
  • 95.67 (n)
  • 94.35 (a)
CXorf22 36
  • 97 (a)
(Rattus norvegicus)
Mammalia LOC680813 35
  • 78.75 (n)
  • 71.67 (a)
(Mus musculus)
Mammalia Chdc2 16
Gm7173 36
  • 66 (a)
(Bos Taurus)
Mammalia CXorf22 36
  • 69 (a)
(Canis familiaris)
Mammalia CXorf22 36
  • 71 (a)
(Monodelphis domestica)
Mammalia CXorf22 36
  • 43 (a)
(Ornithorhynchus anatinus)
Mammalia CXorf22 36
  • 52 (a)
(Gallus gallus)
Aves CXorf22 36
  • 43 (a)
(Anolis carolinensis)
Reptilia CXorf22 36
  • 47 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 36 (a)
Species with no ortholog for CFAP47:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CFAP47 Gene

Gene Tree for CFAP47 (if available)
Gene Tree for CFAP47 (if available)

Paralogs for CFAP47 Gene

No data available for Paralogs for CFAP47 Gene

Variants for CFAP47 Gene

Sequence variations from dbSNP and Humsavar for CFAP47 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2336367 -- 36,079,435(+) cttca(A/G)tcact intron-variant
rs2336368 -- 36,125,931(-) GTGTT(A/G)CACAT intron-variant
rs2336369 -- 36,125,637(-) AATTG(G/T)AAATC intron-variant
rs2336394 -- 36,129,436(-) TAATG(C/T)ATATA intron-variant
rs2336655 -- 36,140,231(+) TATGA(A/G)ACTCA intron-variant

Relevant External Links for CFAP47 Gene

HapMap Linkage Disequilibrium report
Locus Specific Mutation Databases (LSDB)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CFAP47 Gene

Disorders for CFAP47 Gene

No disorders were found for CFAP47 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CFAP47 Gene

Publications for CFAP47 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  5. A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. (PMID: 19377476) Tarpey P.S. … Stratton M.R. (Nat. Genet. 2009) 3

Products for CFAP47 Gene

Sources for CFAP47 Gene

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