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Aliases for CFAP44-AS1 Gene

Subcategory (RNA class) for CFAP44-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CFAP44-AS1 Gene

  • CFAP44 Antisense RNA 1 2 3 5
  • WDR52 Antisense RNA 1 (Non-Protein Coding) 2 3
  • WDR52 Antisense RNA 1 2
  • WDR52-AS1 3

External Ids for CFAP44-AS1 Gene

Previous HGNC Symbols for CFAP44-AS1 Gene

  • WDR52-AS1

Summaries for CFAP44-AS1 Gene

GeneCards Summary for CFAP44-AS1 Gene

CFAP44-AS1 (CFAP44 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP44-AS1 Gene

Genomics for CFAP44-AS1 Gene

Regulatory Elements for CFAP44-AS1 Gene

Enhancers for CFAP44-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G114306 1 ENCODE dbSUPER 4.2 +904.3 904258 2.8 USF1 TBL1XR1 MAX ASH2L RELA ELK1 POLR2A EED ZSCAN29 ETV6 CFAP44-AS1 MIR568 TIGIT
GH03G114312 0.6 dbSUPER 4.2 +912.1 912061 6.7 GATA2 SCRT2 ZSCAN4 JUNB NFE2 CHD7 NFE2L2 ZBTB20-AS1 CFAP44-AS1 MIR568 TIGIT
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CFAP44-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CFAP44-AS1 Gene

Chromosome:
3
Start:
113,403,991 bp from pter
End:
113,433,992 bp from pter
Size:
30,002 bases
Orientation:
Plus strand

Genomic View for CFAP44-AS1 Gene

Genes around CFAP44-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFAP44-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFAP44-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP44-AS1 Gene

Proteins for CFAP44-AS1 Gene

Post-translational modifications for CFAP44-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CFAP44-AS1 Gene

Domains & Families for CFAP44-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CFAP44-AS1 Gene

Function for CFAP44-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFAP44-AS1 Gene

Localization for CFAP44-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CFAP44-AS1 Gene

Pathways & Interactions for CFAP44-AS1 Gene

SuperPathways for CFAP44-AS1 Gene

No Data Available

Interacting Proteins for CFAP44-AS1 Gene

Gene Ontology (GO) - Biological Process for CFAP44-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CFAP44-AS1 Gene

Drugs & Compounds for CFAP44-AS1 Gene

No Compound Related Data Available

Transcripts for CFAP44-AS1 Gene

mRNA/cDNA for CFAP44-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP44-AS1 Gene

No ASD Table

Relevant External Links for CFAP44-AS1 Gene

GeneLoc Exon Structure for
CFAP44-AS1
ECgene alternative splicing isoforms for
CFAP44-AS1

Expression for CFAP44-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CFAP44-AS1 Gene

genes like me logo Genes that share expression patterns with CFAP44-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CFAP44-AS1 Gene

Orthologs for CFAP44-AS1 Gene

Evolution for CFAP44-AS1 Gene

ENSEMBL:
Gene Tree for CFAP44-AS1 (if available)
TreeFam:
Gene Tree for CFAP44-AS1 (if available)

No data available for Orthologs for CFAP44-AS1 Gene

Paralogs for CFAP44-AS1 Gene

No data available for Paralogs for CFAP44-AS1 Gene

Variants for CFAP44-AS1 Gene

Sequence variations from dbSNP and Humsavar for CFAP44-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000161855 -- 113,423,843(+) GCCAC(A/G)TGCAG intron-variant
rs1000278358 -- 113,405,726(+) TTCTT(C/T)CCTAT intron-variant
rs1000336870 -- 113,406,537(+) GAGAA(C/T)GGCGT intron-variant
rs1000441282 -- 113,411,817(+) ATTCA(C/T)TGAGC intron-variant
rs1000598686 -- 113,431,470(+) ACCAA(A/C)ACACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CFAP44-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1013506 CNV gain 25217958
nsv822221 CNV loss 20364138

Relevant External Links for CFAP44-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFAP44-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CFAP44-AS1 Gene

Disorders for CFAP44-AS1 Gene

Relevant External Links for CFAP44-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFAP44-AS1

No disorders were found for CFAP44-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CFAP44-AS1 Gene

Publications for CFAP44-AS1 Gene

No publications were found for CFAP44-AS1 Gene.

Products for CFAP44-AS1 Gene

Sources for CFAP44-AS1 Gene

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