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Aliases for CFAP36 Gene

Aliases for CFAP36 Gene

  • Cilia And Flagella Associated Protein 36 2 3
  • Coiled-Coil Domain-Containing Protein 104 3 4
  • Coiled-Coil Domain Containing 104 2 3
  • CCDC104 3 4
  • Cilia- And Flagella-Associated Protein 36 3

External Ids for CFAP36 Gene

Previous HGNC Symbols for CFAP36 Gene

  • CCDC104

Summaries for CFAP36 Gene

GeneCards Summary for CFAP36 Gene

CFAP36 (Cilia And Flagella Associated Protein 36) is a Protein Coding gene.

UniProtKB/Swiss-Prot for CFAP36 Gene

  • May act as an effector for ARL3

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP36 Gene

Genomics for CFAP36 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CFAP36 Gene

Start:
55,519,595 bp from pter
End:
55,545,879 bp from pter
Size:
26,285 bases
Orientation:
Plus strand

Genomic View for CFAP36 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CFAP36 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP36 Gene

No data available for Regulatory Elements for CFAP36 Gene

Proteins for CFAP36 Gene

  • Protein details for CFAP36 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96G28-CFA36_HUMAN
    Recommended name:
    Cilia- and flagella-associated protein 36
    Protein Accession:
    Q96G28
    Secondary Accessions:
    • Q53SF0
    • Q53ST9
    • Q6UY34

    Protein attributes for CFAP36 Gene

    Size:
    342 amino acids
    Molecular mass:
    39447 Da
    Quaternary structure:
    • Interacts with ARL3.

    Alternative splice isoforms for CFAP36 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP36 Gene

Proteomics data for CFAP36 Gene at MOPED

Post-translational modifications for CFAP36 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CFAP36 Gene

No data available for DME Specific Peptides for CFAP36 Gene

Domains for CFAP36 Gene

Protein Domains for CFAP36 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q96G28

UniProtKB/Swiss-Prot:

CFA36_HUMAN :
  • Q96G28
Family:
  • Belongs to the CFAP36 family.
genes like me logo Genes that share domains with CFAP36: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CFAP36 Gene

Function for CFAP36 Gene

Molecular function for CFAP36 Gene

UniProtKB/Swiss-Prot Function: May act as an effector for ARL3

Gene Ontology (GO) - Molecular Function for CFAP36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CFAP36: view

Phenotypes for CFAP36 Gene

genes like me logo Genes that share phenotypes with CFAP36: view

miRNA for CFAP36 Gene

miRTarBase miRNAs that target CFAP36

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for CFAP36 Gene

Localization for CFAP36 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CFAP36 Gene

Nucleus. Cytoplasm. Cell projection, cilium, flagellum.

Gene Ontology (GO) - Cellular Components for CFAP36 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm IEA --
GO:0042995 cell projection IEA --
genes like me logo Genes that share ontologies with CFAP36: view

No data available for Subcellular locations from COMPARTMENTS for CFAP36 Gene

Pathways for CFAP36 Gene

SuperPathways for CFAP36 Gene

No Data Available

Interacting Proteins for CFAP36 Gene

Gene Ontology (GO) - Biological Process for CFAP36 Gene

None

No data available for Pathways by source for CFAP36 Gene

Transcripts for CFAP36 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP36

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP36 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11a · 11b ^ 12
SP1: - - - -
SP2: - - - - -
SP3: -
SP4: - - -
SP5: -
SP6: - - -

Relevant External Links for CFAP36 Gene

GeneLoc Exon Structure for
CFAP36
ECgene alternative splicing isoforms for
CFAP36

Expression for CFAP36 Gene

mRNA expression in normal human tissues for CFAP36 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CFAP36 Gene

mRNA Expression by UniProt/SwissProt for CFAP36 Gene

Q96G28-CFA36_HUMAN
Tissue specificity: Expressed in several human tissues including brain, testis, heart, lung, pancreas and spleen (at protein level).
genes like me logo Genes that share expressions with CFAP36: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for CFAP36 Gene

Orthologs for CFAP36 Gene

This gene was present in the common ancestor of animals.

Orthologs for CFAP36 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CCDC104 35
  • 99.61 (n)
  • 99.12 (a)
CCDC104 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CCDC104 35
  • 91.91 (n)
  • 91.37 (a)
CCDC104 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CCDC104 35
  • 93.7 (n)
  • 92.68 (a)
CCDC104 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ccdc104 35
  • 88.5 (n)
  • 90.94 (a)
Ccdc104 16
Ccdc104 36
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CCDC104 36
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CCDC104 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ccdc104 35
  • 87.33 (n)
  • 90.06 (a)
chicken
(Gallus gallus)
Aves CCDC104 35
  • 66.25 (n)
  • 58.31 (a)
CCDC104 36
  • 54 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CCDC104 36
  • 61 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia mgc15407-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia ccdc104 35
  • 61.72 (n)
  • 52.26 (a)
MGC76095 35
zebrafish
(Danio rerio)
Actinopterygii ccdc104 35
  • 52.87 (n)
  • 49.34 (a)
ccdc104 36
  • 39 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG14367 36
  • 26 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y108G3AL.3 36
  • 12 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2835 36
  • 17 (a)
OneToOne
Species with no ortholog for CFAP36:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CFAP36 Gene

ENSEMBL:
Gene Tree for CFAP36 (if available)
TreeFam:
Gene Tree for CFAP36 (if available)

Paralogs for CFAP36 Gene

No data available for Paralogs for CFAP36 Gene

Variants for CFAP36 Gene

Sequence variations from dbSNP and Humsavar for CFAP36 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1045910 -- 55,544,025(+) AAAAG(A/G)CCTGA reference, missense
rs1045920 -- 55,544,033(+) TGAAG(A/T)TTCCT reference, missense
rs1128735 -- 55,544,355(+) AACCC(A/C)CTGGG reference, missense
rs1318672 -- 55,541,747(+) AATCA(G/T)AAAGG intron-variant
rs1867334 -- 55,533,469(+) TAGGC(C/T)GAGGG intron-variant

Relevant External Links for CFAP36 Gene

HapMap Linkage Disequilibrium report
CFAP36

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CFAP36 Gene

Disorders for CFAP36 Gene

No disorders were found for CFAP36 Gene.

No data available for UniProtKB/Swiss-Prot for CFAP36 Gene

Publications for CFAP36 Gene

  1. Antibody to CCDC104 is associated with a paraneoplastic antibody to CDR2 (anti-Yo). (PMID: 19680650) Totland C. … Vedeler C.A. (Cancer Immunol. Immunother. 2010) 2 3 4
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4
  5. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3

Products for CFAP36 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CFAP36
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CFAP36
    • Block miRNA regulation of CFAP36 using miScript Target Protectors

    Sources for CFAP36 Gene

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