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Aliases for CFAP221 Gene

Aliases for CFAP221 Gene

  • Cilia And Flagella Associated Protein 221 2 3 5
  • Primary Ciliary Dyskinesia Protein 1 3 4
  • PCDP1 3 4
  • Flagellar Associated Protein 221 Homolog (Chlamydomonas) 2
  • Primary Ciliary Dyskinesia 1 Homolog (Mouse) 2
  • Cilia- And Flagella-Associated Protein 221 3
  • Flagellar Associated Protein 221 Homolog 3
  • Primary Ciliary Dyskinesia 1 Homolog 3
  • FAP221 3

External Ids for CFAP221 Gene

Summaries for CFAP221 Gene

GeneCards Summary for CFAP221 Gene

CFAP221 (Cilia And Flagella Associated Protein 221) is a Protein Coding gene. Diseases associated with CFAP221 include Primary Ciliary Dyskinesia. GO annotations related to this gene include calmodulin binding.

UniProtKB/Swiss-Prot for CFAP221 Gene

  • May play a role in cilium morphogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CFAP221 Gene

Genomics for CFAP221 Gene

Regulatory Elements for CFAP221 Gene

Enhancers for CFAP221 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F119579 0.2 ENCODE 11.5 +35.3 35267 0.1 ATF3 HNF4G RAD21 NR2F2 YY1 CFAP221 TMEM177
GH02F119419 1.2 FANTOM5 Ensembl ENCODE 11.1 -116.3 -116327 16.7 HDGF PKNOX1 MLX ARID4B ZNF2 YY1 SLC30A9 ZNF143 ZNF207 KLF13 SCTR ENSG00000231013 CFAP221 MTND4P26 TMEM37 DBI STEAP3 PIR46529
GH02F119174 0.3 FANTOM5 3.8 -369.8 -369757 0.1 CTCF ZNF143 SMC3 MIER2 REST ZNF48 RAD21 STEAP3 CFAP221 RN7SL468P PIR58141
GH02F119541 0.4 ENCODE 0.8 +2.4 2368 10.8 ATF1 PKNOX1 ARID4B SIN3A ZNF48 GATA2 ZNF143 FOS KLF13 MCM3 SCTR TMEM177 EPB41L5 CFAP221
GH02F119534 0.7 ENCODE 0.4 -7.9 -7868 3.6 ATF1 PKNOX1 FEZF1 ZBTB40 ZIC2 FOSL1 NR2F6 MTA2 RNF2 ZNF488 SCTR CFAP221
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CFAP221 on UCSC Golden Path with GeneCards custom track

Promoters for CFAP221 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000597344 78 1399 ATF1 PKNOX1 ARID4B SIN3A ZNF48 KLF13 MCM3 SP3 SP5 REST

Genomic Location for CFAP221 Gene

Chromosome:
2
Start:
119,544,423 bp from pter
End:
119,662,251 bp from pter
Size:
117,829 bases
Orientation:
Plus strand

Genomic View for CFAP221 Gene

Genes around CFAP221 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CFAP221 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CFAP221 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CFAP221 Gene

Proteins for CFAP221 Gene

  • Protein details for CFAP221 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q4G0U5-PCDP1_HUMAN
    Recommended name:
    Cilia- and flagella-associated protein 221
    Protein Accession:
    Q4G0U5
    Secondary Accessions:
    • B4DEK0
    • B4E2T5

    Protein attributes for CFAP221 Gene

    Size:
    840 amino acids
    Molecular mass:
    96891 Da
    Quaternary structure:
    • Interacts with calmodulin; calcium-dependent.

    Alternative splice isoforms for CFAP221 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CFAP221 Gene

Post-translational modifications for CFAP221 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CFAP221 Gene

Domains & Families for CFAP221 Gene

Protein Domains for CFAP221 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CFAP221 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q4G0U5

UniProtKB/Swiss-Prot:

PCDP1_HUMAN :
  • Belongs to the PCDP1 family.
Family:
  • Belongs to the PCDP1 family.
genes like me logo Genes that share domains with CFAP221: view

No data available for Gene Families for CFAP221 Gene

Function for CFAP221 Gene

Molecular function for CFAP221 Gene

UniProtKB/Swiss-Prot Function:
May play a role in cilium morphogenesis.

Gene Ontology (GO) - Molecular Function for CFAP221 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005516 calmodulin binding ISS --
genes like me logo Genes that share ontologies with CFAP221: view
genes like me logo Genes that share phenotypes with CFAP221: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CFAP221 Gene

Localization for CFAP221 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CFAP221 Gene

Cytoplasm, cytoskeleton, cilium axoneme. Cytoplasm.

Gene Ontology (GO) - Cellular Components for CFAP221 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005929 cilium ISS --
GO:0005930 axoneme ISS --
GO:0042995 cell projection IEA --
genes like me logo Genes that share ontologies with CFAP221: view

No data available for Subcellular locations from COMPARTMENTS for CFAP221 Gene

Pathways & Interactions for CFAP221 Gene

SuperPathways for CFAP221 Gene

No Data Available

Interacting Proteins for CFAP221 Gene

Gene Ontology (GO) - Biological Process for CFAP221 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003341 cilium movement IEA --
GO:0030030 cell projection organization IEA --
GO:0044458 motile cilium assembly IEA --
GO:0060271 cilium assembly ISS --
genes like me logo Genes that share ontologies with CFAP221: view

No data available for Pathways by source and SIGNOR curated interactions for CFAP221 Gene

Transcripts for CFAP221 Gene

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CFAP221 Gene

No ASD Table

Relevant External Links for CFAP221 Gene

GeneLoc Exon Structure for
CFAP221
ECgene alternative splicing isoforms for
CFAP221

Expression for CFAP221 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CFAP221 Gene

Protein differential expression in normal tissues from HIPED for CFAP221 Gene

This gene is overexpressed in Testis (49.4) and Ovary (19.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CFAP221 Gene



Protein tissue co-expression partners for CFAP221 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CFAP221 Gene:

CFAP221

mRNA Expression by UniProt/SwissProt for CFAP221 Gene:

Q4G0U5-PCDP1_HUMAN
Tissue specificity: Expressed in ciliated respiratory epithelial cells and brain ependymal cells (at protein level).
genes like me logo Genes that share expression patterns with CFAP221: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for CFAP221 Gene

Orthologs for CFAP221 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CFAP221 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC459577 34
  • 99.29 (n)
-- 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia PCDP1 34
  • 84.55 (n)
-- 35
  • 79 (a)
OneToOne
cow
(Bos Taurus)
Mammalia PCDP1 34
  • 81.3 (n)
-- 35
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pcdp1 34
  • 77.55 (n)
mouse
(Mus musculus)
Mammalia Gm101 34 35
  • 77.39 (n)
Cfap221 16
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 36 (a)
OneToOne
chicken
(Gallus gallus)
Aves PCDP1 34
  • 60.16 (n)
-- 35
  • 47 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 47 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.16079 34
zebrafish
(Danio rerio)
Actinopterygii si:ch73-222h13.1 34 35
  • 50.9 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 41 (a)
OneToOne
Species where no ortholog for CFAP221 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CFAP221 Gene

ENSEMBL:
Gene Tree for CFAP221 (if available)
TreeFam:
Gene Tree for CFAP221 (if available)

Paralogs for CFAP221 Gene

No data available for Paralogs for CFAP221 Gene

Variants for CFAP221 Gene

Sequence variations from dbSNP and Humsavar for CFAP221 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10170154 -- 119,642,986(+) GGGTC(G/T)TGCTA intron-variant
rs10172551 -- 119,553,290(+) AGGGG(C/T)TTGAG intron-variant
rs10173076 -- 119,631,583(+) ggcag(A/G)agaat intron-variant, downstream-variant-500B
rs10174220 -- 119,683,834(+) CAGCC(C/T)GGCTC intron-variant
rs10178172 -- 119,577,791(+) AATGG(A/G)GTAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CFAP221 Gene

Variant ID Type Subtype PubMed ID
esv2556349 CNV deletion 19546169
esv2720635 CNV deletion 23290073
esv2720636 CNV deletion 23290073
esv2720637 CNV deletion 23290073
esv2720638 CNV deletion 23290073
esv2720639 CNV deletion 23290073
esv2720641 CNV deletion 23290073
esv2720642 CNV deletion 23290073

Variation tolerance for CFAP221 Gene

Residual Variation Intolerance Score: 90% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.60; 65.34% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CFAP221 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CFAP221

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CFAP221 Gene

Disorders for CFAP221 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CFAP221 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
primary ciliary dyskinesia
  • ciliary motility disorder
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CFAP221

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CFAP221
genes like me logo Genes that share disorders with CFAP221: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CFAP221 Gene

Publications for CFAP221 Gene

  1. Primary ciliary dyskinesia in mice lacking the novel ciliary protein Pcdp1. (PMID: 18039845) Lee L. … Fleming M.D. (Mol. Cell. Biol. 2008) 2 3 4 64
  2. Pcdp1 is a central apparatus protein that binds Ca(2+)-calmodulin and regulates ciliary motility. (PMID: 20421426) DiPetrillo C.G. … Smith E.F. (J. Cell Biol. 2010) 2 3 64
  3. Genetic susceptibility for chronic bronchitis in chronic obstructive pulmonary disease. (PMID: 25241909) Lee J. … Silverman E.K. (Respir. Res. 2014) 3 64
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 64
  5. Molecular genetics of adult ADHD: converging evidence from genome-wide association and extended pedigree linkage studies. (PMID: 18839057) Lesch K.P. … Jacob C. (J Neural Transm 2008) 3 64

Products for CFAP221 Gene

Sources for CFAP221 Gene

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