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Aliases for CETN4P Gene

Aliases for CETN4P Gene

  • Centrin 4, Pseudogene 2 3 5
  • Centrin EF-Hand Protein 4, Pseudogene 2

External Ids for CETN4P Gene

Previous GeneCards Identifiers for CETN4P Gene

  • GC04M123653
  • GC04M119378

Summaries for CETN4P Gene

Entrez Gene Summary for CETN4P Gene

  • Centrins are members of the calcium-binding EF-hand protein superfamily and accumulate in centrosomes. This gene has been inactivated by mutation and is nonfunctional in humans. [provided by RefSeq, Oct 2008]

GeneCards Summary for CETN4P Gene

CETN4P (Centrin 4, Pseudogene) is a Pseudogene.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CETN4P Gene

Genomics for CETN4P Gene

Regulatory Elements for CETN4P Gene

Enhancers for CETN4P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G122763 1.9 FANTOM5 Ensembl ENCODE dbSUPER 20.7 -32.3 -32348 4.0 PKNOX1 FOXA2 ARNT DMAP1 TCF12 GTF3C2 GATA2 FOS JUNB TBX21 SPATA5 CETN4P FGF2 ENSG00000237868 BBS12 EXOSC9 NUDT6 CCNA2 LOC727709 RPL34P12
GH04G122757 1.2 Ensembl ENCODE dbSUPER 18 -25.7 -25728 0.9 CTCF ZNF654 ATF1 NR2F1 JUN BACH1 REST RAD21 RFX5 THRAP3 CETN4P BBS12 SPATA5 NUDT6 FGF2 LOC727709 RPL34P12
GH04G122731 1.1 ENCODE 16 -0.7 -745 2.9 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 ZNF143 FOS KLF13 CETN4P SPATA5 EXOSC9 BBS7 ENSG00000273007 TRPC3 LOC727709
GH04G122781 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.4 -51.3 -51278 4.2 TBP FOXA2 RFX5 YY1 RCOR1 FOS CEBPB REST IKZF1 GLIS1 FGF2 SPATA5 NUDT6 CETN4P SPRY1 RPL34P12 LOC727709
GH04G122795 1.7 FANTOM5 Ensembl ENCODE dbSUPER 9.1 -65.7 -65694 4.5 HDAC1 TBP PKNOX1 ZBTB40 RAD21 ZNF766 ZNF366 CEBPB REST ZEB2 FGF2 SPATA5 NUDT6 IL21-AS1 CETN4P SPRY1 RPL34P12 LOC727709
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CETN4P on UCSC Golden Path with GeneCards custom track

Promoters for CETN4P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000172725 -342 1601 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 YY1 ZNF143 FOS KLF13

Genomic Location for CETN4P Gene

Chromosome:
4
Start:
122,730,189 bp from pter
End:
122,732,458 bp from pter
Size:
2,270 bases
Orientation:
Minus strand

Genomic View for CETN4P Gene

Genes around CETN4P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CETN4P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CETN4P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CETN4P Gene

Proteins for CETN4P Gene

Post-translational modifications for CETN4P Gene

No Post-translational modifications

No data available for DME Specific Peptides for CETN4P Gene

Domains & Families for CETN4P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CETN4P Gene

Function for CETN4P Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CETN4P Gene

Localization for CETN4P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CETN4P Gene

Pathways & Interactions for CETN4P Gene

SuperPathways for CETN4P Gene

No Data Available

Interacting Proteins for CETN4P Gene

Gene Ontology (GO) - Biological Process for CETN4P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CETN4P Gene

Drugs & Compounds for CETN4P Gene

No Compound Related Data Available

Transcripts for CETN4P Gene

mRNA/cDNA for CETN4P Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CETN4P Gene

Centrin EF-hand protein 4, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CETN4P Gene

No ASD Table

Relevant External Links for CETN4P Gene

GeneLoc Exon Structure for
CETN4P
ECgene alternative splicing isoforms for
CETN4P

Expression for CETN4P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CETN4P Gene

mRNA differential expression in normal tissues according to GTEx for CETN4P Gene

This gene is overexpressed in Testis (x13.0).

NURSA nuclear receptor signaling pathways regulating expression of CETN4P Gene:

CETN4P

SOURCE GeneReport for Unigene cluster for CETN4P Gene:

Hs.647968
genes like me logo Genes that share expression patterns with CETN4P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CETN4P Gene

Orthologs for CETN4P Gene

Evolution for CETN4P Gene

ENSEMBL:
Gene Tree for CETN4P (if available)
TreeFam:
Gene Tree for CETN4P (if available)

No data available for Orthologs for CETN4P Gene

Paralogs for CETN4P Gene

No data available for Paralogs for CETN4P Gene

Variants for CETN4P Gene

Sequence variations from dbSNP and Humsavar for CETN4P Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs28642232 Likely benign 122,732,692(+) TCTCT(C/T)TCCAG intron-variant, upstream-variant-2KB
rs309358 Likely benign 122,732,771(+) ACGGG(A/G)AACTG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs59440868 Uncertain significance 122,732,834(+) TGGCC(A/C/G/T)GTGGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs886059055 Uncertain significance 122,732,738(+) AGAAG(C/T)CCCTC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs886059056 Uncertain significance 122,732,743(+) CCCCT(C/G)TTCGC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for CETN4P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CETN4P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CETN4P Gene

Disorders for CETN4P Gene

Relevant External Links for CETN4P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CETN4P

No disorders were found for CETN4P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CETN4P Gene

Publications for CETN4P Gene

  1. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3 64
  2. Comparative genomics search for losses of long-established genes on the human lineage. (PMID: 18085818) Zhu J. … Haussler D. (PLoS Comput. Biol. 2007) 3 64
  3. Centrin isoforms in mammals. Relation to calmodulin. (PMID: 17089211) Friedberg F. (Mol. Biol. Rep. 2006) 3 64

Products for CETN4P Gene

Sources for CETN4P Gene

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