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Aliases for CERS6 Gene

Aliases for CERS6 Gene

  • Ceramide Synthase 6 2 3
  • LAG1 Homolog, Ceramide Synthase 6 2 3
  • LASS6 3 4
  • LAG1 Longevity Assurance Homolog 6 (S. Cerevisiae) 2
  • LAG1 Longevity Assurance Homolog 6 4
  • Longevity Assurance Homolog 6 3
  • CERS5 3
  • CerS6 4

External Ids for CERS6 Gene

Previous HGNC Symbols for CERS6 Gene

  • LASS6

Previous GeneCards Identifiers for CERS6 Gene

  • GC02P169313

Summaries for CERS6 Gene

GeneCards Summary for CERS6 Gene

CERS6 (Ceramide Synthase 6) is a Protein Coding gene. Among its related pathways are Metabolism and Sphingolipid metabolism. GO annotations related to this gene include sphingosine N-acyltransferase activity. An important paralog of this gene is CERS5.

UniProtKB/Swiss-Prot for CERS6 Gene

  • May be involved in sphingolipid synthesis or its regulation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CERS6 Gene

Genomics for CERS6 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CERS6 Gene

Chromosome:
2
Start:
168,455,862 bp from pter
End:
168,775,137 bp from pter
Size:
319,276 bases
Orientation:
Plus strand

Genomic View for CERS6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CERS6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CERS6 Gene

No data available for Regulatory Elements for CERS6 Gene

Proteins for CERS6 Gene

  • Protein details for CERS6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZMG9-CERS6_HUMAN
    Recommended name:
    Ceramide synthase 6
    Protein Accession:
    Q6ZMG9
    Secondary Accessions:
    • Q32M63
    • Q8N617

    Protein attributes for CERS6 Gene

    Size:
    384 amino acids
    Molecular mass:
    44890 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH30800.2; Type=Erroneous translation; Note=Wrong choice of frame.; Evidence={ECO:0000305};

    Alternative splice isoforms for CERS6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CERS6 Gene

Proteomics data for CERS6 Gene at MOPED

Post-translational modifications for CERS6 Gene

Other Protein References for CERS6 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for CERS6 Gene

Domains & Families for CERS6 Gene

Gene Families for CERS6 Gene

Suggested Antigen Peptide Sequences for CERS6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZMG9

UniProtKB/Swiss-Prot:

CERS6_HUMAN :
  • Contains 1 homeobox DNA-binding domain.
Domain:
  • Contains 1 homeobox DNA-binding domain.
  • Contains 1 TLC (TRAM/LAG1/CLN8) domain.
genes like me logo Genes that share domains with CERS6: view

Function for CERS6 Gene

Molecular function for CERS6 Gene

UniProtKB/Swiss-Prot Function:
May be involved in sphingolipid synthesis or its regulation.

Gene Ontology (GO) - Molecular Function for CERS6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0050291 sphingosine N-acyltransferase activity IBA --
genes like me logo Genes that share ontologies with CERS6: view
genes like me logo Genes that share phenotypes with CERS6: view

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CERS6

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targets and HOMER Transcription for CERS6 Gene

Localization for CERS6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CERS6 Gene

Nucleus membrane; Multi-pass membrane protein. Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CERS6 Gene COMPARTMENTS Subcellular localization image for CERS6 gene
Compartment Confidence
endoplasmic reticulum 4
nucleus 3
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for CERS6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum --
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA --
GO:0031965 nuclear membrane IEA --
genes like me logo Genes that share ontologies with CERS6: view

Pathways & Interactions for CERS6 Gene

genes like me logo Genes that share pathways with CERS6: view

Pathways by source for CERS6 Gene

Interacting Proteins for CERS6 Gene

Gene Ontology (GO) - Biological Process for CERS6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006665 sphingolipid metabolic process TAS --
GO:0030148 sphingolipid biosynthetic process TAS --
GO:0044281 small molecule metabolic process TAS --
GO:0046513 ceramide biosynthetic process IBA --
genes like me logo Genes that share ontologies with CERS6: view

No data available for SIGNOR curated interactions for CERS6 Gene

Drugs & Compounds for CERS6 Gene

(3) Drugs for CERS6 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Sphingosine Experimental Pharma 0
sphinganine Pharma 0
Coenzyme A Nutra 0
genes like me logo Genes that share compounds with CERS6: view

Transcripts for CERS6 Gene

mRNA/cDNA for CERS6 Gene

(3) REFSEQ mRNAs :
(13) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CERS6 Gene

Ceramide synthase 6:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CERS6

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CERS6 Gene

No ASD Table

Relevant External Links for CERS6 Gene

GeneLoc Exon Structure for
CERS6
ECgene alternative splicing isoforms for
CERS6

Expression for CERS6 Gene

mRNA expression in normal human tissues for CERS6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CERS6 Gene

This gene is overexpressed in Lung (15.4), Fetal Brain (10.7), Testis (9.7), and Fetal gut (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for CERS6 Gene



SOURCE GeneReport for Unigene cluster for CERS6 Gene Hs.506829

genes like me logo Genes that share expression patterns with CERS6: view

Protein tissue co-expression partners for CERS6 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CERS6 Gene

Orthologs for CERS6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CERS6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CERS6 35
  • 93.14 (n)
  • 93.49 (a)
CERS6 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CERS6 35
  • 93.8 (n)
  • 95.81 (a)
CERS6 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cers6 35
  • 90.28 (n)
  • 95.31 (a)
Cers6 16
Cers6 36
  • 95 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LASS6 35
  • 99.74 (n)
  • 100 (a)
CERS6 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cers6 35
  • 90.19 (n)
  • 95.31 (a)
oppossum
(Monodelphis domestica)
Mammalia CERS6 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CERS6 36
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves CERS6 35
  • 77.5 (n)
  • 79.72 (a)
CERS6 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CERS6 36
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cers6 35
  • 77.35 (n)
  • 83.53 (a)
zebrafish
(Danio rerio)
Actinopterygii cers6 35
  • 72.96 (n)
  • 81.11 (a)
cers6 36
  • 79 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta schlank 36
  • 39 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea hyl-1 36
  • 27 (a)
ManyToMany
hyl-2 36
  • 26 (a)
ManyToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G26200 35
  • 45.66 (n)
  • 32.88 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9504 36
  • 44 (a)
OneToMany
Species with no ortholog for CERS6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CERS6 Gene

ENSEMBL:
Gene Tree for CERS6 (if available)
TreeFam:
Gene Tree for CERS6 (if available)

Paralogs for CERS6 Gene

Paralogs for CERS6 Gene

(5) SIMAP similar genes for CERS6 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CERS6: view

Variants for CERS6 Gene

Sequence variations from dbSNP and Humsavar for CERS6 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs716335 -- 168,545,617(-) ATTCT(C/T)TGTGT intron-variant
rs717037 -- 168,565,096(-) TAAAA(C/T)TGTCA intron-variant
rs717038 -- 168,565,045(-) TATGC(C/G/T)AAGGC intron-variant
rs717039 -- 168,564,783(-) ATGCA(G/T)GGGTA intron-variant
rs719970 -- 168,591,521(+) CACAA(C/T)CATTA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CERS6 Gene

Variant ID Type Subtype PubMed ID
nsv428405 CNV Loss 18775914
nsv834450 CNV Gain 17160897
esv2667449 CNV Deletion 23128226
esv2721102 CNV Deletion 23290073
dgv64n68 CNV Gain 17160897
esv2567946 CNV Deletion 19546169
esv2350302 CNV Deletion 18987734
esv3263 CNV Deletion 18987735
esv2721103 CNV Deletion 23290073
esv999398 CNV Deletion 20482838
esv6815 CNV Loss 19470904
esv2428031 CNV Deletion 19546169
esv1682076 CNV Deletion 17803354
esv2721104 CNV Deletion 23290073
esv268464 CNV Insertion 20981092
esv2663091 CNV Deletion 23128226
esv2721105 CNV Deletion 23290073
nsv821785 CNV Loss 20364138
esv2721107 CNV Deletion 23290073
esv1983529 CNV Deletion 18987734
esv4907 CNV Deletion 18987735
esv2721108 CNV Deletion 23290073
nsv215317 CNV Loss 16902084
esv1631379 CNV Deletion 17803354

Variation tolerance for CERS6 Gene

Residual Variation Intolerance Score: 37.52% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.44; 43.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CERS6 Gene

HapMap Linkage Disequilibrium report
CERS6
Human Gene Mutation Database (HGMD)
CERS6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CERS6 Gene

Disorders for CERS6 Gene

Relevant External Links for CERS6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CERS6
genes like me logo Genes that share disorders with CERS6: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CERS6 Gene

Publications for CERS6 Gene

  1. The CLN9 protein, a regulator of dihydroceramide synthase. (PMID: 16303764) Schulz A. … Boustany R.M. (J. Biol. Chem. 2006) 23 67
  2. LASS6, an additional member of the longevity assurance gene family. (PMID: 16211262) Weinmann A. … Teufel A. (Int. J. Mol. Med. 2005) 23 67
  3. Downregulation of ceramide synthase-6 during epithelial-to-mesenchymal transition reduces plasma membrane fluidity and cancer cell motility. (PMID: 24632610) Edmond V. … Legembre P. (Oncogene 2015) 67
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 67
  5. Expression of Ceramide Synthase 6 Transcriptionally Activates Acid Ceramidase in a c-Jun N-terminal Kinase (JNK)-dependent Manner. (PMID: 25839235) Tirodkar T.S. … Voelkel-Johnson C. (J. Biol. Chem. 2015) 67

Products for CERS6 Gene

Sources for CERS6 Gene

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