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Aliases for CERNA3 Gene

Subcategory (RNA class) for CERNA3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CERNA3 Gene

  • Competing Endogenous LncRNA 3 For MiR-645 2 3 5
  • CTA 3

External Ids for CERNA3 Gene

Summaries for CERNA3 Gene

GeneCards Summary for CERNA3 Gene

CERNA3 (Competing Endogenous LncRNA 3 For MiR-645) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CERNA3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CERNA3 Gene

Genomics for CERNA3 Gene

Regulatory Elements for CERNA3 Gene

Enhancers for CERNA3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08H056093 0.7 ENCODE 0.4 +19.2 19235 0.2 CTCF RB1 TBL1XR1 ZNF2 RAD21 CC2D1A CTBP1 FOXK2 SMC3 ZNF143 MOS NPM1P21 CERNA3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CERNA3 on UCSC Golden Path with GeneCards custom track

Promoters for CERNA3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000224726 -492 1801 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A MEF2D

Genomic Locations for CERNA3 Gene

Genomic Locations for CERNA3 Gene
chr8:56,074,592-56,081,915
(GRCh38/hg38)
Size:
7,324 bases
Orientation:
Plus strand
chr8:56,987,151-56,987,833
(GRCh37/hg19)

Genomic View for CERNA3 Gene

Genes around CERNA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CERNA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CERNA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CERNA3 Gene

Proteins for CERNA3 Gene

Post-translational modifications for CERNA3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CERNA3 Gene

Domains & Families for CERNA3 Gene

Gene Families for CERNA3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CERNA3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CERNA3 Gene

Function for CERNA3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CERNA3 Gene

Localization for CERNA3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CERNA3 Gene

Pathways & Interactions for CERNA3 Gene

SuperPathways for CERNA3 Gene

No Data Available

Interacting Proteins for CERNA3 Gene

Gene Ontology (GO) - Biological Process for CERNA3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CERNA3 Gene

Drugs & Compounds for CERNA3 Gene

No Compound Related Data Available

Transcripts for CERNA3 Gene

mRNA/cDNA for CERNA3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CERNA3 Gene

No ASD Table

Relevant External Links for CERNA3 Gene

GeneLoc Exon Structure for
CERNA3
ECgene alternative splicing isoforms for
CERNA3

Expression for CERNA3 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CERNA3 Gene

Orthologs for CERNA3 Gene

Evolution for CERNA3 Gene

ENSEMBL:
Gene Tree for CERNA3 (if available)
TreeFam:
Gene Tree for CERNA3 (if available)

No data available for Orthologs for CERNA3 Gene

Paralogs for CERNA3 Gene

No data available for Paralogs for CERNA3 Gene

Variants for CERNA3 Gene

Sequence variations from dbSNP and Humsavar for CERNA3 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs863223400 Uncertain significance 56,073,724(-) TCAAA(-/A)GTGAA downstream-variant-500B, upstream-variant-2KB, reference, frameshift-variant
rs1000156755 -- 56,077,225(+) AACCT(C/T)CACCT intron-variant, downstream-variant-500B
rs1000287653 -- 56,073,500(+) CAAGA(A/C)CACAG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000882533 -- 56,074,469(+) ACCAA(A/T)AATCC upstream-variant-2KB, utr-variant-5-prime
rs1001594282 -- 56,080,599(+) TTATC(A/G)TTAGC intron-variant

Relevant External Links for CERNA3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CERNA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CERNA3 Gene

Disorders for CERNA3 Gene

No disorders were found for CERNA3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for CERNA3 Gene

Publications for CERNA3 Gene

  1. Long non-coding RNA CTA sensitizes osteosarcoma cells to doxorubicin through inhibition of autophagy. (PMID: 28415557) Wang Z … Wu S (Oncotarget 2017) 2 3 60

Products for CERNA3 Gene

Sources for CERNA3 Gene

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