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Aliases for CERNA1 Gene

Subcategory (RNA class) for CERNA1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CERNA1 Gene

  • Competing Endogenous LncRNA 1 For MiR-4707-5p And MiR-4767 2 3 5

External Ids for CERNA1 Gene

Summaries for CERNA1 Gene

GeneCards Summary for CERNA1 Gene

CERNA1 (Competing Endogenous LncRNA 1 For MiR-4707-5p And MiR-4767) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CERNA1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CERNA1 Gene

Genomics for CERNA1 Gene

Regulatory Elements for CERNA1 Gene

Enhancers for CERNA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H052178 1 ENCODE 19.2 -0.2 -194 2.8 ATF1 ARID4B SIN3A YY1 GLIS2 ELK1 ATF7 SP3 SP5 REST CERNA1 LEO1 GNB5 ENSG00000259709 TMOD3 ENSG00000206995
GH15H052185 0.7 ENCODE 13.9 +5.3 5344 0.7 SOX5 ESRRA REST FOXA1 ZNF7 YY1 E2F1 JUND HNF1A ATF3 CERNA1 GNB5
GH15H052133 1.2 Ensembl ENCODE 8.1 -45.2 -45246 2.9 HDGF PKNOX1 FOXA2 ATF1 MLX ARID4B DMAP1 YY1 ZNF143 ATF7 BCL2L10 GNB5 MAPK6 CERNA1 ENSG00000259709 GC15P052163
GH15H052143 0.8 ENCODE 8.6 -35.7 -35718 1.8 GTF2F1 JUN MAX RAD21 ZIC2 FOSL1 E2F1 CTBP1 SMC3 RCOR1 GNB5 MAPK6 MIR1266 CERNA1 SCG3 ENSG00000259709 GC15P052163
GH15H052139 1.2 Ensembl ENCODE 4.6 -40.1 -40067 1.3 ELF3 FOXA2 RB1 ARNT SIN3A ZNF2 RAD21 RFX5 YY1 ZNF143 LEO1 GNB5 ENSG00000259709 CERNA1 GC15P052163
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CERNA1 on UCSC Golden Path with GeneCards custom track

Promoters for CERNA1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000076690 -226 1601 ATF1 ARID4B SIN3A YY1 GLIS2 ELK1 ATF7 RUNX3 SP3 SP5

Genomic Locations for CERNA1 Gene

Genomic Locations for CERNA1 Gene
chr15:52,180,026-52,205,879
(GRCh38/hg38)
Size:
25,854 bases
Orientation:
Plus strand
chr15:52,472,290-52,498,071
(GRCh37/hg19)

Genomic View for CERNA1 Gene

Genes around CERNA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CERNA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CERNA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CERNA1 Gene

Proteins for CERNA1 Gene

Post-translational modifications for CERNA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CERNA1 Gene

Domains & Families for CERNA1 Gene

Gene Families for CERNA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CERNA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CERNA1 Gene

Function for CERNA1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CERNA1 Gene

Localization for CERNA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CERNA1 Gene

Pathways & Interactions for CERNA1 Gene

SuperPathways for CERNA1 Gene

No Data Available

Interacting Proteins for CERNA1 Gene

Gene Ontology (GO) - Biological Process for CERNA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CERNA1 Gene

Drugs & Compounds for CERNA1 Gene

No Compound Related Data Available

Transcripts for CERNA1 Gene

mRNA/cDNA for CERNA1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CERNA1 Gene

No ASD Table

Relevant External Links for CERNA1 Gene

GeneLoc Exon Structure for
CERNA1
ECgene alternative splicing isoforms for
CERNA1

Expression for CERNA1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CERNA1 Gene

Orthologs for CERNA1 Gene

Evolution for CERNA1 Gene

ENSEMBL:
Gene Tree for CERNA1 (if available)
TreeFam:
Gene Tree for CERNA1 (if available)

No data available for Orthologs for CERNA1 Gene

Paralogs for CERNA1 Gene

No data available for Paralogs for CERNA1 Gene

Variants for CERNA1 Gene

Sequence variations from dbSNP and Humsavar for CERNA1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000184401 -- 52,202,249(+) GCGCA(C/T)GCCTG intron-variant
rs1000535187 -- 52,180,254(+) GAGAC(A/C)GGTGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1000575615 -- 52,192,185(+) CATTT(-/TAA)TAATA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000593852 -- 52,189,587(+) AACAA(A/C)AAAAA intron-variant
rs1000684107 -- 52,202,480(+) GTTCT(A/G)AGACC intron-variant

Relevant External Links for CERNA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CERNA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CERNA1 Gene

Disorders for CERNA1 Gene

Relevant External Links for CERNA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CERNA1

No disorders were found for CERNA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CERNA1 Gene

Publications for CERNA1 Gene

  1. Identification of key lncRNAs in colorectal cancer progression based on associated protein-protein interaction analysis. (PMID: 28797257) Zhu H … Feng S (World journal of surgical oncology 2017) 2 3 60
  2. Long Noncoding RNA LOC100129973 Suppresses Apoptosis by Targeting miR-4707-5p and miR-4767 in Vascular Endothelial Cells. (PMID: 26887505) Lu W … Miao JY (Scientific reports 2016) 2 3 60
  3. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W … Gibbs RA (Genome research 1997) 3 60
  4. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B … Gibbs RA (Analytical biochemistry 1996) 3 60

Products for CERNA1 Gene

Sources for CERNA1 Gene

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