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Aliases for CEP83-AS1 Gene

Subcategory (RNA class) for CEP83-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CEP83-AS1 Gene

  • CEP83 Antisense RNA 1 (Head To Head) 2 3 5
  • CCDC41 Antisense RNA 1 (Head To Head) 2 3
  • CCDC41-AS1 3

External Ids for CEP83-AS1 Gene

ORGUL Members for CEP83-AS1 Gene

Previous HGNC Symbols for CEP83-AS1 Gene

  • CCDC41-AS1

Previous GeneCards Identifiers for CEP83-AS1 Gene

  • GC12P094854

Summaries for CEP83-AS1 Gene

GeneCards Summary for CEP83-AS1 Gene

CEP83-AS1 (CEP83 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEP83-AS1 Gene

Genomics for CEP83-AS1 Gene

Regulatory Elements for CEP83-AS1 Gene


Promoters for CEP83-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000055757 -103 2201 HDGF PKNOX1 MLX ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for CEP83-AS1 Gene

Chromosome:
12
Start:
94,460,003 bp from pter
End:
94,462,570 bp from pter
Size:
2,568 bases
Orientation:
Plus strand

Genomic View for CEP83-AS1 Gene

Genes around CEP83-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEP83-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEP83-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEP83-AS1 Gene

Proteins for CEP83-AS1 Gene

Post-translational modifications for CEP83-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEP83-AS1 Gene

Domains & Families for CEP83-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEP83-AS1 Gene

Function for CEP83-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEP83-AS1 Gene

Localization for CEP83-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CEP83-AS1 Gene

Pathways & Interactions for CEP83-AS1 Gene

SuperPathways for CEP83-AS1 Gene

No Data Available

Interacting Proteins for CEP83-AS1 Gene

Gene Ontology (GO) - Biological Process for CEP83-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEP83-AS1 Gene

Drugs & Compounds for CEP83-AS1 Gene

No Compound Related Data Available

Transcripts for CEP83-AS1 Gene

mRNA/cDNA for CEP83-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CEP83-AS1 Gene

No ASD Table

Relevant External Links for CEP83-AS1 Gene

GeneLoc Exon Structure for
CEP83-AS1
ECgene alternative splicing isoforms for
CEP83-AS1

Expression for CEP83-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEP83-AS1 Gene

Orthologs for CEP83-AS1 Gene

Evolution for CEP83-AS1 Gene

ENSEMBL:
Gene Tree for CEP83-AS1 (if available)
TreeFam:
Gene Tree for CEP83-AS1 (if available)

No data available for Orthologs for CEP83-AS1 Gene

Paralogs for CEP83-AS1 Gene

No data available for Paralogs for CEP83-AS1 Gene

Variants for CEP83-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEP83-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000012651 -- 94,458,343(+) AAACA(C/T)TCAAA intron-variant, upstream-variant-2KB
rs1000228195 -- 94,461,984(+) GTTGG(C/T)GTTTT nc-transcript-variant, upstream-variant-2KB
rs1000583621 -- 94,462,474(+) GGGAT(A/G)CTTGG nc-transcript-variant
rs1001742482 -- 94,458,736(+) CAGTC(-/ATAA)ATAAA intron-variant, upstream-variant-2KB
rs1002307436 -- 94,460,264(+) CGACA(C/T)AGCGT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CEP83-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv516550 CNV loss 19592680
nsv7234 OTHER inversion 18451855
nsv832490 CNV gain 17160897

Relevant External Links for CEP83-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEP83-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEP83-AS1 Gene

Disorders for CEP83-AS1 Gene

Relevant External Links for CEP83-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CEP83-AS1

No disorders were found for CEP83-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEP83-AS1 Gene

Publications for CEP83-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for CEP83-AS1 Gene

Sources for CEP83-AS1 Gene

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