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Aliases for CEP83-AS1 Gene

Subcategory (RNA class) for CEP83-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for CEP83-AS1 Gene

  • CEP83 Antisense RNA 1 (Head To Head) 2 3
  • CCDC41 Antisense RNA 1 (Head To Head) 2 3
  • CCDC41-AS1 3

External Ids for CEP83-AS1 Gene

ORGUL Members for CEP83-AS1 Gene

Previous Symbols for CEP83-AS1 Gene

  • CCDC41-AS1

Summaries for CEP83-AS1 Gene

GeneCards Summary for CEP83-AS1 Gene

CEP83-AS1 (CEP83 Antisense RNA 1 (Head To Head)) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEP83-AS1 Gene

Genomics for CEP83-AS1 Gene

Genomic Location for CEP83-AS1 Gene

Start:
94,460,003 bp from pter
End:
94,462,570 bp from pter
Size:
2,568 bases
Orientation:
Plus strand

Genomic View for CEP83-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CEP83-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEP83-AS1 Gene

No data available for Regulatory Elements for CEP83-AS1 Gene

Proteins for CEP83-AS1 Gene

Post-translational modifications for CEP83-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEP83-AS1 Gene

Domains for CEP83-AS1 Gene

Gene Families for CEP83-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CEP83-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEP83-AS1 Gene

Function for CEP83-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CEP83-AS1 Gene

Localization for CEP83-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CEP83-AS1 Gene

Pathways for CEP83-AS1 Gene

SuperPathways for CEP83-AS1 Gene

No Data Available

Interacting Proteins for CEP83-AS1 Gene

Gene Ontology (GO) - Biological Process for CEP83-AS1 Gene

None

No data available for Pathways by source for CEP83-AS1 Gene

Transcripts for CEP83-AS1 Gene

mRNA/cDNA for CEP83-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CEP83-AS1 Gene

No ASD Table

Relevant External Links for CEP83-AS1 Gene

GeneLoc Exon Structure for
CEP83-AS1
ECgene alternative splicing isoforms for
CEP83-AS1

Expression for CEP83-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for CEP83-AS1 Gene

Orthologs for CEP83-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CEP83-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 4932415G12Rik 16
Species with no ortholog for CEP83-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CEP83-AS1 Gene

ENSEMBL:
Gene Tree for CEP83-AS1 (if available)
TreeFam:
Gene Tree for CEP83-AS1 (if available)

Paralogs for CEP83-AS1 Gene

No data available for Paralogs for CEP83-AS1 Gene

Variants for CEP83-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEP83-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs73218280 -- 94,463,070(+) AAAAA(A/C)CAACT downstream-variant-500B
rs73372225 -- 94,462,030(+) TTTAT(A/G)TTTTA nc-transcript-variant
rs73372226 -- 94,462,131(+) AGTCT(C/T)AGCTT nc-transcript-variant
rs79461545 -- 94,462,654(+) ACTCC(A/G)GGCAG downstream-variant-500B
rs113988497 -- 94,462,987(+) AAAGA(A/G)AAAAA downstream-variant-500B

Relevant External Links for CEP83-AS1 Gene

HapMap Linkage Disequilibrium report
CEP83-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CEP83-AS1 Gene

Disorders for CEP83-AS1 Gene

No disorders were found for CEP83-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CEP83-AS1 Gene

Publications for CEP83-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for CEP83-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CEP83-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CEP83-AS1
    • Block miRNA regulation of CEP83-AS1 using miScript Target Protectors

    Sources for CEP83-AS1 Gene

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