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Aliases for CEP170P1 Gene

Aliases for CEP170P1 Gene

  • Centrosomal Protein 170 Pseudogene 1 2 3 5
  • Centrosomal Protein 170kDa Pseudogene 1 2 3
  • KIAA0470L 3 4
  • CEP170L 3 4
  • Centrosomal Protein 170kDa-Like 2
  • CEP170 Pseudogene 1 4
  • KIAA0470-Like 2
  • FAM68B 3

External Ids for CEP170P1 Gene

Previous HGNC Symbols for CEP170P1 Gene

  • KIAA0470L
  • CEP170L

Previous GeneCards Identifiers for CEP170P1 Gene

  • GC04P119438
  • GC04P119389

Summaries for CEP170P1 Gene

Entrez Gene Summary for CEP170P1 Gene

  • This locus appears to be a transcribed pseudogene similar to centrosomal protein 170kDa (CEP170). An approximately 50 kb region upstream of this locus also is homologous to CEP170, but is not transcribed. [provided by RefSeq, Jul 2008]

GeneCards Summary for CEP170P1 Gene

CEP170P1 (Centrosomal Protein 170 Pseudogene 1) is a Pseudogene. GO annotations related to this gene include identical protein binding.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEP170P1 Gene

Genomics for CEP170P1 Gene

Regulatory Elements for CEP170P1 Gene

Enhancers for CEP170P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F118275 1.1 ENCODE 11.5 -188.1 -188090 7.7 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 SNHG8 FKBP4P1 LOC105377391 LOC105377389 CEP170P1 LOC729218 SNORA24 PRSS12
GH04F118683 1.3 Ensembl ENCODE 7.6 +217.5 217541 3.5 HDGF WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 SP3 NFYC JUNB SNHG8 USP53 SYNPO2 METTL14 CEP170P1 LOC101929741 GC04P118767
GH04F118765 1 Ensembl ENCODE 8.4 +298.1 298129 0.7 TAL1 JUN FEZF1 ZNF366 NCOR1 GATA2 SCRT2 FOS SMARCE1 ZNF362 SEC24D METTL14 CEP170P1 GC04P118778
GH04F118465 0.2 ENCODE 0.8 -1.6 -1550 0.2 CEP170P1 ENSG00000273716
GH04F118565 1 Ensembl ENCODE 0.1 +98.6 98602 1.2 KLF1 ZNF146 FEZF1 ZIC2 ZNF366 PATZ1 ZNF600 ZBTB20 ZNF362 ZBTB8A METTL14 GC04M118372 CEP170P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CEP170P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CEP170P1 Gene

Chromosome:
4
Start:
118,467,590 bp from pter
End:
118,554,204 bp from pter
Size:
86,615 bases
Orientation:
Plus strand

Genomic View for CEP170P1 Gene

Genes around CEP170P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEP170P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEP170P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEP170P1 Gene

Proteins for CEP170P1 Gene

  • Protein details for CEP170P1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96L14-C170L_HUMAN
    Recommended name:
    Cep170-like protein
    Protein Accession:
    Q96L14

    Protein attributes for CEP170P1 Gene

    Size:
    293 amino acids
    Molecular mass:
    32648 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CEP170P1 Gene

Post-translational modifications for CEP170P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEP170P1 Gene

Domains & Families for CEP170P1 Gene

Protein Domains for CEP170P1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CEP170P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96L14

UniProtKB/Swiss-Prot:

C170L_HUMAN :
  • Belongs to the CEP170 family.
Family:
  • Belongs to the CEP170 family.
genes like me logo Genes that share domains with CEP170P1: view

No data available for Gene Families for CEP170P1 Gene

Function for CEP170P1 Gene

Gene Ontology (GO) - Molecular Function for CEP170P1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0042802 identical protein binding IPI 16189514
genes like me logo Genes that share ontologies with CEP170P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEP170P1 Gene

Localization for CEP170P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CEP170P1 Gene

Pathways & Interactions for CEP170P1 Gene

SuperPathways for CEP170P1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CEP170P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEP170P1 Gene

Transcripts for CEP170P1 Gene

mRNA/cDNA for CEP170P1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CEP170P1 Gene

Centrosomal protein 170kDa pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CEP170P1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c
SP1: - -
SP2: - - -
SP3:
SP4: -
SP5: -

Relevant External Links for CEP170P1 Gene

GeneLoc Exon Structure for
CEP170P1
ECgene alternative splicing isoforms for
CEP170P1

Expression for CEP170P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CEP170P1 Gene

mRNA differential expression in normal tissues according to GTEx for CEP170P1 Gene

This gene is overexpressed in Testis (x26.9).

Protein differential expression in normal tissues from HIPED for CEP170P1 Gene

This gene is overexpressed in Brain (63.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CEP170P1 Gene



Protein tissue co-expression partners for CEP170P1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CEP170P1 Gene:

CEP170P1

SOURCE GeneReport for Unigene cluster for CEP170P1 Gene:

Hs.408293
genes like me logo Genes that share expression patterns with CEP170P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for CEP170P1 Gene

Orthologs for CEP170P1 Gene

Evolution for CEP170P1 Gene

ENSEMBL:
Gene Tree for CEP170P1 (if available)
TreeFam:
Gene Tree for CEP170P1 (if available)

No data available for Orthologs for CEP170P1 Gene

Paralogs for CEP170P1 Gene

(3) SIMAP similar genes for CEP170P1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CEP170P1: view

No data available for Paralogs for CEP170P1 Gene

Variants for CEP170P1 Gene

Sequence variations from dbSNP and Humsavar for CEP170P1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs10012299 -- 118,550,460(+) cccag(A/G)tatcc intron-variant
rs10018120 -- 118,521,846(+) CTCTA(A/G)TTTAT intron-variant
rs10025153 -- 118,547,380(+) ATTGC(C/G)ATGCA intron-variant
rs10031152 -- 118,549,206(+) agaga(C/T)gaggt intron-variant
rs10031658 -- 118,519,611(+) TCATG(C/T)CTATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CEP170P1 Gene

Variant ID Type Subtype PubMed ID
nsv830044 CNV loss 17160897
nsv519017 CNV loss 19592680
nsv1002771 CNV gain 25217958
esv34354 CNV gain 17911159
esv34038 CNV loss 18971310
esv2759279 CNV gain 17122850
dgv1021e214 CNV gain 21293372

Relevant External Links for CEP170P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEP170P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEP170P1 Gene

Disorders for CEP170P1 Gene

Relevant External Links for CEP170P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CEP170P1

No disorders were found for CEP170P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEP170P1 Gene

Publications for CEP170P1 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  2. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. Next-generation sequencing to generate interactome datasets. (PMID: 21516116) Yu H. … Vidal M. (Nat. Methods 2011) 3 64
  5. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PMID: 20360068) Hutchins J.R. … Peters J.M. (Science 2010) 3 64

Products for CEP170P1 Gene

Sources for CEP170P1 Gene

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