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Aliases for CEP162 Gene

Aliases for CEP162 Gene

  • Centrosomal Protein 162 2 3
  • Centrosomal Protein 162kDa 2 3 5
  • KIAA1009 2 3 4
  • Protein QN1 Homolog 3 4
  • C6orf84 3 4
  • QN1 3 4
  • Chromosome 6 Open Reading Frame 84 2
  • Cep162 4

External Ids for CEP162 Gene

Previous HGNC Symbols for CEP162 Gene

  • C6orf84
  • KIAA1009

Previous GeneCards Identifiers for CEP162 Gene

  • GC06M084833

Summaries for CEP162 Gene

GeneCards Summary for CEP162 Gene

CEP162 (Centrosomal Protein 162) is a Protein Coding gene. Among its related pathways are Organelle biogenesis and maintenance and Regulation of PLK1 Activity at G2/M Transition.

UniProtKB/Swiss-Prot for CEP162 Gene

  • Required to promote assembly of the transition zone in primary cilia. Acts by specifically recognizing and binding the axonemal microtubule. Localizes to the distal ends of centrioles before ciliogenesis and directly binds to axonemal microtubule, thereby promoting and restricting transition zone formation specifically at the cilia base. Required to mediate CEP290 association with microtubules.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEP162 Gene

Genomics for CEP162 Gene

Regulatory Elements for CEP162 Gene

Enhancers for CEP162 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CEP162 on UCSC Golden Path with GeneCards custom track

Promoters for CEP162 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CEP162 on UCSC Golden Path with GeneCards custom track

Genomic Location for CEP162 Gene

Chromosome:
6
Start:
84,124,241 bp from pter
End:
84,227,890 bp from pter
Size:
103,650 bases
Orientation:
Minus strand

Genomic View for CEP162 Gene

Genes around CEP162 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEP162 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEP162 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEP162 Gene

Proteins for CEP162 Gene

  • Protein details for CEP162 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5TB80-CE162_HUMAN
    Recommended name:
    Centrosomal protein of 162 kDa
    Protein Accession:
    Q5TB80
    Secondary Accessions:
    • A6PVL7
    • A6PVL8
    • Q6P475
    • Q9Y2L2

    Protein attributes for CEP162 Gene

    Size:
    1403 amino acids
    Molecular mass:
    161943 Da
    Quaternary structure:
    • Interacts with CEP290 (PubMed:23644468). Interacts with CPNE4 (By similarity). Interacts with alpha-tubulin (By similarity).
    Miscellaneous:
    • Promotes ectopic assembly of transition zone components at cilia tips when targeted outside distal ends of centrioles, generating extra-long cilia with strikingly swollen tips.
    SequenceCaution:
    • Sequence=BAA76853.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for CEP162 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CEP162 Gene

Proteomics data for CEP162 Gene at MOPED

Post-translational modifications for CEP162 Gene

  • Ubiquitination at Lys 908
  • Modification sites at PhosphoSitePlus

Other Protein References for CEP162 Gene

No data available for DME Specific Peptides for CEP162 Gene

Domains & Families for CEP162 Gene

Protein Domains for CEP162 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for CEP162 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5TB80

UniProtKB/Swiss-Prot:

CE162_HUMAN :
  • Belongs to the CEP162 family.
Family:
  • Belongs to the CEP162 family.
genes like me logo Genes that share domains with CEP162: view

No data available for Gene Families for CEP162 Gene

Function for CEP162 Gene

Molecular function for CEP162 Gene

UniProtKB/Swiss-Prot Function:
Required to promote assembly of the transition zone in primary cilia. Acts by specifically recognizing and binding the axonemal microtubule. Localizes to the distal ends of centrioles before ciliogenesis and directly binds to axonemal microtubule, thereby promoting and restricting transition zone formation specifically at the cilia base. Required to mediate CEP290 association with microtubules.

Phenotypes for CEP162 Gene

genes like me logo Genes that share phenotypes with CEP162: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CEP162 Gene

Localization for CEP162 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CEP162 Gene

Cytoplasm, cytoskeleton, microtubule organizing center, centrosome, centriole. Cytoplasm, cytoskeleton, spindle. Nucleus. Note=Localizes to the distal end of centrioles throughout the cell cycle. During ciliogenesis, found at the cilia base. Localizes to spindle microtubules during mitosis.

Gene Ontology (GO) - Cellular Components for CEP162 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005814 centriole IDA 23644468
GO:0005819 spindle IEA --
genes like me logo Genes that share ontologies with CEP162: view

No data available for Subcellular locations from COMPARTMENTS for CEP162 Gene

Pathways & Interactions for CEP162 Gene

genes like me logo Genes that share pathways with CEP162: view

Gene Ontology (GO) - Biological Process for CEP162 Gene

None

No data available for SIGNOR curated interactions for CEP162 Gene

Drugs & Compounds for CEP162 Gene

No Compound Related Data Available

Transcripts for CEP162 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CEP162 Gene

No ASD Table

Relevant External Links for CEP162 Gene

GeneLoc Exon Structure for
CEP162
ECgene alternative splicing isoforms for
CEP162

Expression for CEP162 Gene

mRNA expression in normal human tissues for CEP162 Gene

Protein differential expression in normal tissues from HIPED for CEP162 Gene

This gene is overexpressed in Stomach (31.4), Monocytes (13.9), and Adrenal (6.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CEP162 Gene



genes like me logo Genes that share expression patterns with CEP162: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CEP162 Gene

Orthologs for CEP162 Gene

This gene was present in the common ancestor of animals.

Orthologs for CEP162 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia KIAA1009 35
  • 87.38 (n)
  • 83.3 (a)
KIAA1009 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia KIAA1009 35
  • 88.88 (n)
  • 84.61 (a)
KIAA1009 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4922501C03Rik 35
  • 81.29 (n)
  • 75.95 (a)
Cep162 16
4922501C03Rik 36
  • 75 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia KIAA1009 35
  • 98.17 (n)
  • 96.85 (a)
KIAA1009 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1307365 35
  • 80.9 (n)
  • 75.59 (a)
oppossum
(Monodelphis domestica)
Mammalia KIAA1009 36
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 70 (a)
OneToMany
-- 36
  • 56 (a)
OneToMany
-- 36
  • 62 (a)
OneToMany
chicken
(Gallus gallus)
Aves KIAA1009 35
  • 63.7 (n)
  • 51.3 (a)
KIAA1009 36
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia KIAA1009 36
  • 51 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497718 35
  • 62.86 (n)
  • 53.51 (a)
Str.18747 35
zebrafish
(Danio rerio)
Actinopterygii si:ch211-198c19.2 35
  • 53.96 (n)
  • 45.76 (a)
si:ch211-198c19.2 36
  • 38 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG42699 36
  • 18 (a)
OneToOne
Species with no ortholog for CEP162:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CEP162 Gene

ENSEMBL:
Gene Tree for CEP162 (if available)
TreeFam:
Gene Tree for CEP162 (if available)

Paralogs for CEP162 Gene

No data available for Paralogs for CEP162 Gene

Variants for CEP162 Gene

Sequence variations from dbSNP and Humsavar for CEP162 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs17790493 -, - 84,194,886(+) TACCA(C/G)ATTCC nc-transcript-variant, reference, missense
rs16874323 -, - 84,193,676(+) CTCCT(C/G)TACTG nc-transcript-variant, upstream-variant-2KB, reference, missense
rs1016724 -- 84,191,933(+) tgata(C/T)gaaac intron-variant
rs1016725 -- 84,192,062(+) ttcct(A/G)aatga intron-variant
rs1324146 -- 84,149,160(-) TTCCT(G/T)CCCCA intron-variant

Variation tolerance for CEP162 Gene

Residual Variation Intolerance Score: 94.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.92; 79.68% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for CEP162 Gene

Disorders for CEP162 Gene

Relevant External Links for CEP162

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CEP162

No disorders were found for CEP162 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEP162 Gene

Publications for CEP162 Gene

  1. CEP162 is an axoneme-recognition protein promoting ciliary transition zone assembly at the cilia base. (PMID: 23644468) Wang W.J. … Bryan Tsou M.F. (Nat. Cell Biol. 2013) 2 3 4 67
  2. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3
  4. A Dynamic Protein Interaction Landscape of the Human Centrosome-Cilium Interface. (PMID: 26638075) Gupta G.D. … Pelletier L. (Cell 2015) 3
  5. A genome-wide association study for diabetic retinopathy in a Japanese population: potential association with a long intergenic non-coding RNA. (PMID: 25364816) Awata T. … Koike A. (PLoS ONE 2014) 3

Products for CEP162 Gene

Sources for CEP162 Gene

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