Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CENPVL1 Gene

Aliases for CENPVL1 Gene

  • Centromere Protein V Like 1 2 3 5
  • Centromere Protein V Pseudogene 1 2 3
  • Proline Rich 6-Like 1 2 3
  • CENPVP1 3
  • PRR6L1 3

External Ids for CENPVL1 Gene

Previous HGNC Symbols for CENPVL1 Gene

  • CENPVP1

Previous GeneCards Identifiers for CENPVL1 Gene

  • GC0XP051473

Summaries for CENPVL1 Gene

GeneCards Summary for CENPVL1 Gene

CENPVL1 (Centromere Protein V Like 1) is a Pseudogene. An important paralog of this gene is CENPVL2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPVL1 Gene

Genomics for CENPVL1 Gene

Regulatory Elements for CENPVL1 Gene

Enhancers for CENPVL1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF051802 0.8 ENCODE 7.6 +92.9 92921 1.9 TBP CTCF ATF1 ESRRA RAD21 ZBTB40 ETS1 ZNF664 GLIS2 POLR2A RNU6-504P CENPVL1 NUDT11 MAGED1 LOC100631242
GH0XF051891 0.8 ENCODE 6.4 +183.1 183068 4.4 HDGF TBP ARID4B SIN3A DMAP1 GLIS2 SCRT2 EGR2 SP3 SP5 RNU6-504P CENPVL1 ENSG00000228827
GH0XF051742 0.8 ENCODE 0.3 +32.8 32845 1.8 ETV1 ZBTB40 YY1 EGR1 POLR2A CBX5 PATZ1 SCRT2 ZSCAN29 EGR2 NUDT11 GSPT2 CENPVL1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CENPVL1 on UCSC Golden Path with GeneCards custom track

Promoters for CENPVL1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001917254 188 201

Genomic Location for CENPVL1 Gene

Chromosome:
X
Start:
51,710,512 bp from pter
End:
51,712,131 bp from pter
Size:
1,620 bases
Orientation:
Plus strand

Genomic View for CENPVL1 Gene

Genes around CENPVL1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CENPVL1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CENPVL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPVL1 Gene

Proteins for CENPVL1 Gene

  • Protein details for CENPVL1 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A0U1RR11
    Recommended name:
    Protein CENPVL1
    Protein Accession:
    A0A0U1RR11

    Protein attributes for CENPVL1 Gene

    Size:
    272 amino acids
    Molecular mass:
    29887 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CENPVL1 Gene

Post-translational modifications for CENPVL1 Gene

No Post-translational modifications

Other Protein References for CENPVL1 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for CENPVL1 Gene

Domains & Families for CENPVL1 Gene

Protein Domains for CENPVL1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CENPVL1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CENPVL1 Gene

Function for CENPVL1 Gene

Gene Ontology (GO) - Molecular Function for CENPVL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016846 carbon-sulfur lyase activity IEA --
genes like me logo Genes that share ontologies with CENPVL1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CENPVL1 Gene

Localization for CENPVL1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CENPVL1 Gene

Pathways & Interactions for CENPVL1 Gene

SuperPathways for CENPVL1 Gene

No Data Available

Interacting Proteins for CENPVL1 Gene

Gene Ontology (GO) - Biological Process for CENPVL1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CENPVL1 Gene

Transcripts for CENPVL1 Gene

mRNA/cDNA for CENPVL1 Gene

(10) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CENPVL1 Gene

No ASD Table

Relevant External Links for CENPVL1 Gene

GeneLoc Exon Structure for
CENPVL1
ECgene alternative splicing isoforms for
CENPVL1

Expression for CENPVL1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CENPVL1 Gene:

CENPVL1

SOURCE GeneReport for Unigene cluster for CENPVL1 Gene:

Hs.730388
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CENPVL1 Gene

Orthologs for CENPVL1 Gene

Evolution for CENPVL1 Gene

ENSEMBL:
Gene Tree for CENPVL1 (if available)
TreeFam:
Gene Tree for CENPVL1 (if available)

No data available for Orthologs for CENPVL1 Gene

Paralogs for CENPVL1 Gene

Paralogs for CENPVL1 Gene

genes like me logo Genes that share paralogs with CENPVL1: view

Variants for CENPVL1 Gene

Sequence variations from dbSNP and Humsavar for CENPVL1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs5951122 -- 51,710,305(+) GAGGG(C/T)ATCTG upstream-variant-2KB
rs781985707 -- 51,710,735(+) AGACC(C/T)GCTGC upstream-variant-2KB
rs782281784 -- 51,710,007(+) AACAT(C/T)AGGTA upstream-variant-2KB
rs782306328 -- 51,710,826(+) GAGAC(C/G)TTCAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CENPVL1 Gene

Variant ID Type Subtype PubMed ID
nsv7444 OTHER inversion 18451855
nsv499710 OTHER inversion 21111241
nsv1147181 CNV duplication 26484159
esv3350872 OTHER inversion 20981092
esv1003997 OTHER inversion 20482838

Relevant External Links for CENPVL1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CENPVL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CENPVL1 Gene

Disorders for CENPVL1 Gene

Relevant External Links for CENPVL1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CENPVL1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CENPVL1

No disorders were found for CENPVL1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CENPVL1 Gene

Publications for CENPVL1 Gene

  1. Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow. (PMID: 27250503) Wright J.C. … Harrow J. (Nat Commun 2016) 2 3 64

Products for CENPVL1 Gene

Sources for CENPVL1 Gene

Content
Loading form....