Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CENPV Gene

Aliases for CENPV Gene

  • Centromere Protein V 2 3 5
  • Proline-Rich Protein 6 3 4
  • Nuclear Protein P30 3 4
  • Proline Rich 6 2 3
  • CENP-V 3 4
  • PRR6 3 4
  • 3110013H01Rik 3
  • P30 3

External Ids for CENPV Gene

Previous HGNC Symbols for CENPV Gene

  • PRR6

Previous GeneCards Identifiers for CENPV Gene

  • GC17M016189
  • GC17M016245

Summaries for CENPV Gene

GeneCards Summary for CENPV Gene

CENPV (Centromere Protein V) is a Protein Coding gene. Diseases associated with CENPV include Intracranial Primitive Neuroectodermal Tumor and Diffuse Glomerulonephritis. GO annotations related to this gene include carbon-sulfur lyase activity. An important paralog of this gene is CENPVL2.

UniProtKB/Swiss-Prot for CENPV Gene

  • Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPV Gene

Genomics for CENPV Gene

Regulatory Elements for CENPV Gene

Enhancers for CENPV Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G016312 1.4 ENCODE dbSUPER 21.7 +39.9 39941 1.6 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ZSWIM7 CENPV UPF3AP1 TEKT3 MIR1288 LRRC75A-AS1 LRRC75A TTC19 GC17M016316
GH17G016293 1.3 ENCODE dbSUPER 21.9 +56.4 56355 7.5 FOXA2 PKNOX1 ARID4B DMAP1 YY1 TCF12 GATA2 FOS ZNF202 SP5 ZSWIM7 CENPV PIGL NCOR1 RNU6-314P LRRC75A ADORA2B TTC19 MIR1288 GC17M016316
GH17G016328 1.1 Ensembl ENCODE 25 +24.0 23972 1.4 TBP KLF17 SCRT2 ZNF548 RELB FOS ZNF398 TBX21 SMARCA4 GLIS1 ENSG00000266538 CENPV LOC644422 ACTG1P24 LOC649873 TTC19 GC17M016323 GC17M016347
GH17G016397 1.2 Ensembl ENCODE 13.7 -44.9 -44949 1.8 ATF1 FOXA2 ARNT YY1 TCF12 GATA2 FOS NCOA1 ZNF592 CREB3 CENPV LRRC75A-AS1 LRRC75A TRPV2 TNFRSF13B GC17P016393
GH17G016322 0.5 ENCODE 25.2 +30.7 30665 1.8 ZNF362 BHLHE40 FOS MAFK ZNF558 CENPV GC17M016323 GC17M016316
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CENPV on UCSC Golden Path with GeneCards custom track

Promoters for CENPV Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091753 756 2201 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 ZNF143 PAF1 SP3 SP5

Genomic Location for CENPV Gene

Chromosome:
17
Start:
16,342,534 bp from pter
End:
16,353,656 bp from pter
Size:
11,123 bases
Orientation:
Minus strand

Genomic View for CENPV Gene

Genes around CENPV on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CENPV Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CENPV Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPV Gene

Proteins for CENPV Gene

  • Protein details for CENPV Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z7K6-CENPV_HUMAN
    Recommended name:
    Centromere protein V
    Protein Accession:
    Q7Z7K6
    Secondary Accessions:
    • B2RPK2
    • Q3L8N5
    • Q8NFH6

    Protein attributes for CENPV Gene

    Size:
    275 amino acids
    Molecular mass:
    29946 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CENPV Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CENPV Gene

Post-translational modifications for CENPV Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CENPV Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CENPV Gene

Domains & Families for CENPV Gene

Protein Domains for CENPV Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CENPV Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7Z7K6

UniProtKB/Swiss-Prot:

CENPV_HUMAN :
  • Belongs to the Gfa family.
Family:
  • Belongs to the Gfa family.
genes like me logo Genes that share domains with CENPV: view

No data available for Gene Families for CENPV Gene

Function for CENPV Gene

Molecular function for CENPV Gene

UniProtKB/Swiss-Prot Function:
Required for distribution of pericentromeric heterochromatin in interphase nuclei and for centromere formation and organization, chromosome alignment and cytokinesis.

Gene Ontology (GO) - Molecular Function for CENPV Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0016846 carbon-sulfur lyase activity IEA --
genes like me logo Genes that share ontologies with CENPV: view
genes like me logo Genes that share phenotypes with CENPV: view

Animal Model Products

CRISPR Products

miRNA for CENPV Gene

miRTarBase miRNAs that target CENPV

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CENPV Gene

Localization for CENPV Gene

Subcellular locations from UniProtKB/Swiss-Prot for CENPV Gene

Chromosome, centromere, kinetochore. Nucleus. Cytoplasm, cytoskeleton, spindle. Note=Enriched at the nuclear periphery and around the nucleolus (PubMed:12196509). In mitotic cells, localizes to kinetochores from prometaphase to metaphase (PubMed:18772885). At anaphase onset, transfers to the spindle midzone and then to the mid-body in telophase and cytokinesis (PubMed:18772885).

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CENPV gene
Compartment Confidence
cytoskeleton 5
nucleus 5
cytosol 5
mitochondrion 3
extracellular 2
plasma membrane 1

Gene Ontology (GO) - Cellular Components for CENPV Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000776 kinetochore IDA,IEA 18772885
GO:0000777 condensed chromosome kinetochore IEA --
GO:0005634 nucleus IDA,IEA 12196509
GO:0005654 nucleoplasm IDA --
GO:0005694 chromosome IEA --
genes like me logo Genes that share ontologies with CENPV: view

Pathways & Interactions for CENPV Gene

SuperPathways for CENPV Gene

No Data Available

Gene Ontology (GO) - Biological Process for CENPV Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001667 ameboidal-type cell migration IDA 19930468
GO:0007049 cell cycle IEA --
GO:0007067 mitotic nuclear division IEA --
GO:0008152 metabolic process IEA --
GO:0031508 pericentric heterochromatin assembly IMP 18772885
genes like me logo Genes that share ontologies with CENPV: view

No data available for Pathways by source and SIGNOR curated interactions for CENPV Gene

Drugs & Compounds for CENPV Gene

No Compound Related Data Available

Transcripts for CENPV Gene

mRNA/cDNA for CENPV Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CENPV Gene

Centromere protein V:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for CENPV Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b
SP1: - -
SP2:
SP3:
SP4:

Relevant External Links for CENPV Gene

GeneLoc Exon Structure for
CENPV
ECgene alternative splicing isoforms for
CENPV

Expression for CENPV Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CENPV Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CENPV Gene

This gene is overexpressed in Fetal Brain (14.5) and Testis (14.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CENPV Gene



Protein tissue co-expression partners for CENPV Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CENPV Gene:

CENPV

SOURCE GeneReport for Unigene cluster for CENPV Gene:

Hs.433422

Evidence on tissue expression from TISSUES for CENPV Gene

  • Blood(4.5)
  • Liver(4.3)
  • Nervous system(2.2)
  • Muscle(2)
genes like me logo Genes that share expression patterns with CENPV: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CENPV Gene

Orthologs for CENPV Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CENPV Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CENPV 34 35
  • 99.63 (n)
dog
(Canis familiaris)
Mammalia CENPV 34 35
  • 90.74 (n)
cow
(Bos Taurus)
Mammalia CENPV 34 35
  • 85.93 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CENPV 35
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cenpv 34 16 35
  • 78.57 (n)
rat
(Rattus norvegicus)
Mammalia Cenpv 34
  • 70.04 (n)
oppossum
(Monodelphis domestica)
Mammalia CENPV 35
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves CENPV 34 35
  • 76.51 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia cenpv 34
  • 73.9 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.5502 34
zebrafish
(Danio rerio)
Actinopterygii cenpv 34 35
  • 69.15 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6672 34
worm
(Caenorhabditis elegans)
Secernentea CELE_F25B4.8 34
  • 55.46 (n)
F25B4.8 35
  • 50 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G16940 34
  • 50.26 (n)
rice
(Oryza sativa)
Liliopsida Os09g0397700 34
  • 56.32 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.8853 34
Species where no ortholog for CENPV was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CENPV Gene

ENSEMBL:
Gene Tree for CENPV (if available)
TreeFam:
Gene Tree for CENPV (if available)

Paralogs for CENPV Gene

Paralogs for CENPV Gene

genes like me logo Genes that share paralogs with CENPV: view

Variants for CENPV Gene

Sequence variations from dbSNP and Humsavar for CENPV Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000119487 -- 16,351,874(+) TCTTC(A/G)TATTC intron-variant, downstream-variant-500B
rs1000255906 -- 16,351,627(+) ACACA(A/G)TATTT intron-variant, utr-variant-3-prime
rs1000340783 -- 16,343,552(+) GTCTC(A/G)AACTC intron-variant
rs1000341057 -- 16,345,396(+) AAACC(C/G)TGTTT intron-variant
rs1000371755 -- 16,343,325(+) TTAGA(C/T)AGATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CENPV Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
nsv1063764 CNV loss 25217958
nsv1144792 CNV deletion 24896259
nsv827903 CNV gain 20364138

Variation tolerance for CENPV Gene

Residual Variation Intolerance Score: 45.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.35; 7.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CENPV Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CENPV

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CENPV Gene

Disorders for CENPV Gene

MalaCards: The human disease database

(4) MalaCards diseases for CENPV Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
intracranial primitive neuroectodermal tumor
  • intracranial pnet
diffuse glomerulonephritis
  • glomerulonephritis diffuse
extraosseous ewing's sarcoma
  • extraosseous ewing sarcoma
bone ewing's sarcoma
  • bone ewing sarcoma
- elite association - COSMIC cancer census association via MalaCards
Search CENPV in MalaCards View complete list of genes associated with diseases

Relevant External Links for CENPV

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CENPV
genes like me logo Genes that share disorders with CENPV: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CENPV Gene

Publications for CENPV Gene

  1. CENP-V is required for centromere organization, chromosome alignment and cytokinesis. (PMID: 18772885) Tadeu A.M.B. … Earnshaw W.C. (EMBO J. 2008) 2 3 4 64
  2. Proteomic analysis of the mammalian nuclear pore complex. (PMID: 12196509) Cronshaw J.M. … Matunis M.J. (J. Cell Biol. 2002) 2 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  4. The Polycomb Repressive Complex 1 Protein BMI1 Is Required for Constitutive Heterochromatin Formation and Silencing in Mammalian Somatic Cells. (PMID: 26468281) Abdouh M. … Bernier G. (J. Biol. Chem. 2016) 3 64
  5. Proximity biotinylation and affinity purification are complementary approaches for the interactome mapping of chromatin-associated protein complexes. (PMID: 25281560) Lambert J.P. … Gingras A.C. (J Proteomics 2015) 3 64

Products for CENPV Gene

Sources for CENPV Gene

Content
Loading form....