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Aliases for CENPBD1 Gene

Aliases for CENPBD1 Gene

  • CENPB DNA-Binding Domains Containing 1 2 3

External Ids for CENPBD1 Gene

Previous GeneCards Identifiers for CENPBD1 Gene

  • GC16M088567
  • GC16M090036
  • GC16M075729

Summaries for CENPBD1 Gene

GeneCards Summary for CENPBD1 Gene

CENPBD1 (CENPB DNA-Binding Domains Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPBD1 Gene

Genomics for CENPBD1 Gene

Genomic Location for CENPBD1 Gene

Start:
89,969,775 bp from pter
End:
89,972,832 bp from pter
Size:
3,058 bases
Orientation:
Minus strand

Genomic View for CENPBD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CENPBD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPBD1 Gene

No data available for Regulatory Elements for CENPBD1 Gene

Proteins for CENPBD1 Gene

  • Protein details for CENPBD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B2RD01-CENP1_HUMAN
    Recommended name:
    CENPB DNA-binding domain-containing protein 1
    Protein Accession:
    B2RD01
    Secondary Accessions:

    Protein attributes for CENPBD1 Gene

    Size:
    187 amino acids
    Molecular mass:
    21052 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CENPBD1 Gene

Proteomics data for CENPBD1 Gene at MOPED

Post-translational modifications for CENPBD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CENPBD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CENPBD1 Gene

Domains for CENPBD1 Gene

Protein Domains for CENPBD1 Gene

Suggested Antigen Peptide Sequences for CENPBD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

B2RD01

UniProtKB/Swiss-Prot:

CENP1_HUMAN :
  • B2RD01
Domain:
  • Contains 1 HTH CENPB-type DNA-binding domain.
  • Contains 1 HTH psq-type DNA-binding domain.
genes like me logo Genes that share domains with CENPBD1: view

No data available for Gene Families for CENPBD1 Gene

Function for CENPBD1 Gene

Gene Ontology (GO) - Molecular Function for CENPBD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with CENPBD1: view

miRNA for CENPBD1 Gene

miRTarBase miRNAs that target CENPBD1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CENPBD1 Gene

Localization for CENPBD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CENPBD1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CENPBD1 Gene COMPARTMENTS Subcellular localization image for CENPBD1 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for CENPBD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with CENPBD1: view

Pathways for CENPBD1 Gene

SuperPathways for CENPBD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CENPBD1 Gene

None

No data available for Pathways by source for CENPBD1 Gene

Transcripts for CENPBD1 Gene

mRNA/cDNA for CENPBD1 Gene

Unigene Clusters for CENPBD1 Gene

CENPB DNA-binding domains containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CENPBD1 Gene

No ASD Table

Relevant External Links for CENPBD1 Gene

GeneLoc Exon Structure for
CENPBD1
ECgene alternative splicing isoforms for
CENPBD1

Expression for CENPBD1 Gene

mRNA expression in normal human tissues for CENPBD1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CENPBD1 Gene

SOURCE GeneReport for Unigene cluster for CENPBD1 Gene Hs.513832

genes like me logo Genes that share expressions with CENPBD1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CENPBD1 Gene

Orthologs for CENPBD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CENPBD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CENPBD1 35
  • 63.53 (n)
  • 59.83 (a)
cow
(Bos Taurus)
Mammalia CENPBD1 36
  • 53 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CENPBD1 36
  • 46 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CENPBD1 36
  • 8 (a)
OneToOne
Species with no ortholog for CENPBD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CENPBD1 Gene

ENSEMBL:
Gene Tree for CENPBD1 (if available)
TreeFam:
Gene Tree for CENPBD1 (if available)

Paralogs for CENPBD1 Gene

Selected SIMAP similar genes for CENPBD1 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CENPBD1 Gene

genes like me logo Genes that share paralogs with CENPBD1: view

No data available for Paralogs for CENPBD1 Gene

Variants for CENPBD1 Gene

Sequence variations from dbSNP and Humsavar for CENPBD1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs7201264 -- 89,969,714(+) agctt(C/G)gatga downstream-variant-500B
rs9929773 -- 89,969,537(+) GAGCC(C/T)GGGAG downstream-variant-500B
rs13330208 -- 89,969,363(+) tgatc(G/T)cctga downstream-variant-500B
rs61741215 -- 89,970,135(+) TGAGA(C/G)GGCTG utr-variant-3-prime
rs61742599 -- 89,970,340(+) TTTTT(C/T)TGAAG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CENPBD1 Gene

Variant ID Type Subtype PubMed ID
nsv428331 CNV Gain+Loss 18775914
dgv3009n71 CNV Loss 21882294
nsv907429 CNV Loss 21882294
dgv3015n71 CNV Loss 21882294
nsv907443 CNV Loss 21882294
nsv509640 CNV Insertion 20534489
nsv907445 CNV Loss 21882294
nsv457626 CNV Loss 19166990
nsv471119 CNV Loss 18288195

Relevant External Links for CENPBD1 Gene

HapMap Linkage Disequilibrium report
CENPBD1
Human Gene Mutation Database (HGMD)
CENPBD1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CENPBD1 Gene

Disorders for CENPBD1 Gene

No disorders were found for CENPBD1 Gene.

No data available for UniProtKB/Swiss-Prot for CENPBD1 Gene

Publications for CENPBD1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. A protein interaction framework for human mRNA degradation. (PMID: 15231747) Lehner B. … Sanderson C.M. (Genome Res. 2004) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4
  5. NotI flanking sequences: a tool for gene discovery and verification of the human genome. (PMID: 12136098) Kutsenko A.S. … Zabarovsky E.R. (Nucleic Acids Res. 2002) 3

Products for CENPBD1 Gene

Sources for CENPBD1 Gene

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