Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CENPBD1 Gene

Aliases for CENPBD1 Gene

  • CENPB DNA-Binding Domain Containing 1 2 3 5
  • CENPB DNA-Binding Domains Containing 1 2

External Ids for CENPBD1 Gene

Previous GeneCards Identifiers for CENPBD1 Gene

  • GC16M088567
  • GC16M090036
  • GC16M075729

Summaries for CENPBD1 Gene

GeneCards Summary for CENPBD1 Gene

CENPBD1 (CENPB DNA-Binding Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CENPBD1 Gene

Genomics for CENPBD1 Gene

Regulatory Elements for CENPBD1 Gene

Enhancers for CENPBD1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CENPBD1 on UCSC Golden Path with GeneCards custom track

Promoters for CENPBD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CENPBD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CENPBD1 Gene

89,969,775 bp from pter
89,972,832 bp from pter
3,058 bases
Minus strand

Genomic View for CENPBD1 Gene

Genes around CENPBD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CENPBD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CENPBD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CENPBD1 Gene

Proteins for CENPBD1 Gene

  • Protein details for CENPBD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    CENPB DNA-binding domain-containing protein 1
    Protein Accession:

    Protein attributes for CENPBD1 Gene

    187 amino acids
    Molecular mass:
    21052 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CENPBD1 Gene

Proteomics data for CENPBD1 Gene at MOPED

Post-translational modifications for CENPBD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CENPBD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CENPBD1 Gene

Domains & Families for CENPBD1 Gene

Gene Families for CENPBD1 Gene

Protein Domains for CENPBD1 Gene

Suggested Antigen Peptide Sequences for CENPBD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 HTH CENPB-type DNA-binding domain.
  • Contains 1 HTH CENPB-type DNA-binding domain.
  • Contains 1 HTH psq-type DNA-binding domain.
genes like me logo Genes that share domains with CENPBD1: view

Function for CENPBD1 Gene

genes like me logo Genes that share phenotypes with CENPBD1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CENPBD1 Gene

Localization for CENPBD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CENPBD1 Gene

Subcellular locations from

Jensen Localization Image for CENPBD1 Gene COMPARTMENTS Subcellular localization image for CENPBD1 gene
Compartment Confidence
nucleus 4
cytosol 2
mitochondrion 1

No data available for Gene Ontology (GO) - Cellular Components for CENPBD1 Gene

Pathways & Interactions for CENPBD1 Gene

SuperPathways for CENPBD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for CENPBD1 Gene


No data available for Pathways by source and SIGNOR curated interactions for CENPBD1 Gene

Drugs & Compounds for CENPBD1 Gene

No Compound Related Data Available

Transcripts for CENPBD1 Gene

mRNA/cDNA for CENPBD1 Gene

Unigene Clusters for CENPBD1 Gene

CENPB DNA-binding domains containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CENPBD1 Gene

No ASD Table

Relevant External Links for CENPBD1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CENPBD1 Gene

mRNA expression in normal human tissues for CENPBD1 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CENPBD1 Gene

SOURCE GeneReport for Unigene cluster for CENPBD1 Gene Hs.513832

genes like me logo Genes that share expression patterns with CENPBD1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CENPBD1 Gene

Orthologs for CENPBD1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CENPBD1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CENPBD1 35
  • 63.53 (n)
  • 59.83 (a)
(Bos Taurus)
Mammalia CENPBD1 36
  • 53 (a)
(Canis familiaris)
Mammalia CENPBD1 36
  • 46 (a)
(Anolis carolinensis)
Reptilia CENPBD1 36
  • 8 (a)
Species with no ortholog for CENPBD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CENPBD1 Gene

Gene Tree for CENPBD1 (if available)
Gene Tree for CENPBD1 (if available)

Paralogs for CENPBD1 Gene

(1) SIMAP similar genes for CENPBD1 Gene using alignment to 1 proteins: Pseudogenes for CENPBD1 Gene

genes like me logo Genes that share paralogs with CENPBD1: view

No data available for Paralogs for CENPBD1 Gene

Variants for CENPBD1 Gene

Sequence variations from dbSNP and Humsavar for CENPBD1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs13330208 -- 89,969,363(+) tgatc(G/T)cctga downstream-variant-500B
rs61741215 -- 89,970,135(+) TGAGA(C/G)GGCTG utr-variant-3-prime
rs9929773 -- 89,969,537(+) GAGCC(C/T)GGGAG downstream-variant-500B
rs61742599 -- 89,970,340(+) TTTTT(C/T)TGAAG utr-variant-3-prime
rs7201264 -- 89,969,714(+) agctt(C/G)gatga downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CENPBD1 Gene

Variant ID Type Subtype PubMed ID
nsv428331 CNV Gain+Loss 18775914
dgv3009n71 CNV Loss 21882294
nsv907429 CNV Loss 21882294
dgv3015n71 CNV Loss 21882294
nsv907443 CNV Loss 21882294
nsv509640 CNV Insertion 20534489
nsv907445 CNV Loss 21882294
nsv457626 CNV Loss 19166990
nsv471119 CNV Loss 18288195

Variation tolerance for CENPBD1 Gene

Gene Damage Index Score: 3.90; 59.28% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CENPBD1 Gene

Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CENPBD1 Gene

Disorders for CENPBD1 Gene

Relevant External Links for CENPBD1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for CENPBD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CENPBD1 Gene

Publications for CENPBD1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Analysis of a high-throughput yeast two-hybrid system and its use to predict the function of intracellular proteins encoded within the human MHC class III region. (PMID: 14667819) Lehner B. … Sanderson C.M. (Genomics 2004) 3
  3. A protein interaction framework for human mRNA degradation. (PMID: 15231747) Lehner B. … Sanderson C.M. (Genome Res. 2004) 3
  4. NotI flanking sequences: a tool for gene discovery and verification of the human genome. (PMID: 12136098) Kutsenko A.S. … Zabarovsky E.R. (Nucleic Acids Res. 2002) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CENPBD1 Gene

Sources for CENPBD1 Gene