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Aliases for CELSR3-AS1 Gene

Subcategory (RNA class) for CELSR3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CELSR3-AS1 Gene

  • CELSR3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for CELSR3-AS1 Gene

Summaries for CELSR3-AS1 Gene

GeneCards Summary for CELSR3-AS1 Gene

CELSR3-AS1 (CELSR3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CELSR3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CELSR3-AS1 Gene

Genomics for CELSR3-AS1 Gene

Regulatory Elements for CELSR3-AS1 Gene

Enhancers for CELSR3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H048682 1.3 ENCODE dbSUPER 13 +21.8 21842 5.8 HDGF ATF1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ZNF121 GLIS2 GATA2 WDR6 ENSG00000235236 AMT NCKIPSD DHX30 FCF1P2 IP6K2 CELSR3 CELSR3-AS1 ZNF589
GH03H048661 1.1 ENCODE 0.7 -0.2 -203 3.1 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 WDR6 QRICH1 ATRIP USP19 ZNF589 NME6 MRPS18AP1 ENSG00000235236 TMEM89 CCDC71
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CELSR3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CELSR3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000303940 132 601 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF766 ZNF207 ZNF143

Genomic Locations for CELSR3-AS1 Gene

Genomic Locations for CELSR3-AS1 Gene
chr3:48,663,768-48,669,174
(GRCh38/hg38)
Size:
5,407 bases
Orientation:
Plus strand
chr3:48,701,209-48,706,607
(GRCh37/hg19)

Genomic View for CELSR3-AS1 Gene

Genes around CELSR3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CELSR3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CELSR3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CELSR3-AS1 Gene

Proteins for CELSR3-AS1 Gene

Post-translational modifications for CELSR3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CELSR3-AS1 Gene

Domains & Families for CELSR3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CELSR3-AS1 Gene

Function for CELSR3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CELSR3-AS1 Gene

Localization for CELSR3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CELSR3-AS1 Gene

Pathways & Interactions for CELSR3-AS1 Gene

SuperPathways for CELSR3-AS1 Gene

No Data Available

Interacting Proteins for CELSR3-AS1 Gene

Gene Ontology (GO) - Biological Process for CELSR3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CELSR3-AS1 Gene

Drugs & Compounds for CELSR3-AS1 Gene

No Compound Related Data Available

Transcripts for CELSR3-AS1 Gene

mRNA/cDNA for CELSR3-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CELSR3-AS1 Gene

No ASD Table

Relevant External Links for CELSR3-AS1 Gene

GeneLoc Exon Structure for
CELSR3-AS1
ECgene alternative splicing isoforms for
CELSR3-AS1

Expression for CELSR3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CELSR3-AS1 Gene

genes like me logo Genes that share expression patterns with CELSR3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CELSR3-AS1 Gene

Orthologs for CELSR3-AS1 Gene

Evolution for CELSR3-AS1 Gene

ENSEMBL:
Gene Tree for CELSR3-AS1 (if available)
TreeFam:
Gene Tree for CELSR3-AS1 (if available)

No data available for Orthologs for CELSR3-AS1 Gene

Paralogs for CELSR3-AS1 Gene

No data available for Paralogs for CELSR3-AS1 Gene

Variants for CELSR3-AS1 Gene

Sequence variations from dbSNP and Humsavar for CELSR3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000722507 -- 48,669,127(+) CTGTT(C/T)ACAAG intron-variant, nc-transcript-variant
rs1000799645 -- 48,664,883(+) TCTGA(A/G)TCACC intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs1000961186 -- 48,664,715(+) GGGAT(C/T)ATAGG intron-variant, upstream-variant-2KB, reference, missense
rs1001169723 -- 48,664,436(+) GGCTG(A/G)AGGAG intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs1001733572 -- 48,666,007(+) TTTTT(G/T)AGACA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CELSR3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv954485 CNV deletion 24416366
nsv834685 CNV loss 17160897
nsv818138 CNV gain 17921354
nsv590247 CNV loss 21841781
nsv590246 CNV loss 21841781
nsv523981 CNV loss 19592680

Relevant External Links for CELSR3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CELSR3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CELSR3-AS1 Gene

Disorders for CELSR3-AS1 Gene

Relevant External Links for CELSR3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CELSR3-AS1

No disorders were found for CELSR3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CELSR3-AS1 Gene

Publications for CELSR3-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for CELSR3-AS1 Gene

Sources for CELSR3-AS1 Gene

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