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Aliases for CECR7 Gene

Subcategory (RNA class) for CECR7 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CECR7 Gene

  • Cat Eye Syndrome Chromosome Region, Candidate 7 (Non-Protein Coding) 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 7 2
  • SAHL1 3

External Ids for CECR7 Gene

Previous GeneCards Identifiers for CECR7 Gene

  • GC22P014461
  • GC22P015892
  • GC22U900116
  • GC22P017517
  • GC22P001336

Summaries for CECR7 Gene

GeneCards Summary for CECR7 Gene

CECR7 (Cat Eye Syndrome Chromosome Region, Candidate 7 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CECR7 include Cat Eye Syndrome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CECR7 Gene

Genomics for CECR7 Gene

Regulatory Elements for CECR7 Gene

Enhancers for CECR7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F017084 1.3 FANTOM5 ENCODE 29.7 +49.7 49717 4.3 HDGF PKNOX1 ATF1 SIN3A DMAP1 YY1 GLIS2 ZNF263 SP3 TBX21 CECR7 ENSG00000273203 IL17RA CECR1 CECR2 RPL31P62
GH22F017058 1 Ensembl ENCODE 27.8 +21.7 21651 0.4 CTCF ZNF76 RAD21 TEAD3 ZNF143 SMC3 PRDM10 ZNF654 MAZ MIER1 CECR7 ENSG00000273203 PIR31163 PIR45862
GH22F017063 0.8 Ensembl ENCODE 31.7 +27.7 27661 2.1 JUN MAX EGR2 TRIM28 CECR7 ENSG00000273203 PIR31163
GH22F017074 1.1 Ensembl ENCODE 19.2 +39.1 39132 1.8 CTCF KLF17 ZNF384 RAD21 HIC1 ZFHX2 ZNF316 SCRT2 SMC3 NFE2 CECR7 CECR6 LINC01664 CECR1 CECR3 ENSG00000273203 ENSG00000273442
GH22F017036 0.7 ENCODE 27.2 +0.4 428 1.8 BCOR NFRKB SIN3A POLR2A ZNF143 STAT1 L3MBTL2 NRF1 NR4A1 ZNF407 CECR7 PIR45862
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CECR7 on UCSC Golden Path with GeneCards custom track

Promoters for CECR7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001841701 730 2200 BCOR NFRKB ZNF316 POLR2A ZNF143 NFE2 STAT1 L3MBTL2 NRF1 NR4A1

Genomic Location for CECR7 Gene

Chromosome:
22
Start:
17,036,570 bp from pter
End:
17,060,825 bp from pter
Size:
24,256 bases
Orientation:
Plus strand

Genomic View for CECR7 Gene

Genes around CECR7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CECR7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CECR7 Gene

Proteins for CECR7 Gene

Post-translational modifications for CECR7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CECR7 Gene

Domains & Families for CECR7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CECR7 Gene

Function for CECR7 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR7 Gene

Localization for CECR7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CECR7 Gene

Pathways & Interactions for CECR7 Gene

SuperPathways for CECR7 Gene

No Data Available

Interacting Proteins for CECR7 Gene

Gene Ontology (GO) - Biological Process for CECR7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CECR7 Gene

Transcripts for CECR7 Gene

mRNA/cDNA for CECR7 Gene

(6) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CECR7 Gene

Cat eye syndrome chromosome region, candidate 7 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CECR7 Gene

No ASD Table

Relevant External Links for CECR7 Gene

GeneLoc Exon Structure for
CECR7
ECgene alternative splicing isoforms for
CECR7

Expression for CECR7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CECR7 Gene

NURSA nuclear receptor signaling pathways regulating expression of CECR7 Gene:

CECR7

SOURCE GeneReport for Unigene cluster for CECR7 Gene:

Hs.660640
genes like me logo Genes that share expression patterns with CECR7: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CECR7 Gene

Orthologs for CECR7 Gene

Evolution for CECR7 Gene

ENSEMBL:
Gene Tree for CECR7 (if available)
TreeFam:
Gene Tree for CECR7 (if available)

No data available for Orthologs for CECR7 Gene

Paralogs for CECR7 Gene

No data available for Paralogs for CECR7 Gene

Variants for CECR7 Gene

Sequence variations from dbSNP and Humsavar for CECR7 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1005208 -- 17,056,684(-) AGGCT(A/G)GGCAT intron-variant
rs1005209 -- 17,056,640(-) acacg(A/G)ccatg intron-variant
rs10483090 -- 17,058,788(+) TAAAA(C/T)GACTG nc-transcript-variant
rs1054945 -- 17,058,654(+) TGAAG(A/G)ACATC nc-transcript-variant
rs1054946 -- 17,058,735(+) GATCA(C/G)TGAGT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CECR7 Gene

Variant ID Type Subtype PubMed ID
nsv1067241 CNV loss 25217958
nsv1064641 CNV gain 25217958
esv3647204 CNV gain 21293372
esv3568226 CNV loss 25503493
dgv4463n100 CNV gain 25217958
dgv4460n100 CNV gain 25217958

Relevant External Links for CECR7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CECR7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CECR7 Gene

Disorders for CECR7 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CECR7 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards
Search CECR7 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CECR7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CECR7
genes like me logo Genes that share disorders with CECR7: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR7 Gene

Publications for CECR7 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz T.K. … McDermid H.E. (Genome Res. 2001) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Three duplicons form a novel chimeric transcription unit in the pericentromeric region of chromosome 22q11. (PMID: 12483300) Bridgland L. … McDermid H.E. (Hum. Genet. 2003) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CECR7 Gene

Sources for CECR7 Gene

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