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Aliases for CECR5-AS1 Gene

Subcategory (RNA class) for CECR5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for CECR5-AS1 Gene

  • CECR5 Antisense RNA 1 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 4 (Non-Protein Coding) 2 3
  • CECR5 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Cat Eye Syndrome Chromosome Region, Candidate 4 2
  • Non-Protein Coding RNA 17 2
  • NCRNA00017 3
  • CECR4 3

External Ids for CECR5-AS1 Gene

Previous HGNC Symbols for CECR5-AS1 Gene

  • CECR4

Previous GeneCards Identifiers for CECR5-AS1 Gene

  • GC22P017641

Summaries for CECR5-AS1 Gene

GeneCards Summary for CECR5-AS1 Gene

CECR5-AS1 (CECR5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CECR5-AS1 include Cat Eye Syndrome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CECR5-AS1 Gene

Genomics for CECR5-AS1 Gene

Regulatory Elements for CECR5-AS1 Gene

Enhancers for CECR5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F017131 1.4 Ensembl ENCODE 12.7 -27.4 -27372 1.2 CTCF ZNF316 RFX1 GLIS1 ZIC2 EMSY MAFK CECR5-AS1 CECR5 CECR2 CECR1 CECR3 LINC01664 IL17RA GC22P017136
GH22F017806 0.2 ENCODE 5.7 +648.9 648894 2.9 MICAL3 BID CECR5-AS1 PIR49162 ENSG00000093100
GH22F017963 1.2 Ensembl ENCODE 4.6 +805.2 805187 2.2 BCOR CTCF MXI1 TAL1 SIN3A MAX EBF1 ZNF121 POLR2A GATA2 MICAL3 CECR5-AS1 PIR53397 MIR648
GH22F017157 1 ENCODE 0.8 -0.3 -285 2.6 PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF207 ZNF143 FOS LINC01664 CECR6 CECR5 CECR5-AS1 GC22P017137
GH22F017152 0.9 Ensembl ENCODE 0.4 -6.3 -6258 0.7 HDGF HDAC1 NFRKB ZNF335 GATA2 FOS ZBTB11 ZEB2 POLR2H TFDP1 LINC01664 CECR6 IL17RA CECR5 CECR5-AS1 GC22P017137
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CECR5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CECR5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001531064 -384 2801 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF207 ZNF143

Genomic Location for CECR5-AS1 Gene

Chromosome:
22
Start:
17,159,384 bp from pter
End:
17,165,445 bp from pter
Size:
6,062 bases
Orientation:
Plus strand

Genomic View for CECR5-AS1 Gene

Genes around CECR5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CECR5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CECR5-AS1 Gene

Proteins for CECR5-AS1 Gene

Post-translational modifications for CECR5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CECR5-AS1 Gene

Domains & Families for CECR5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CECR5-AS1 Gene

Function for CECR5-AS1 Gene

Animal Model Products

miRNA for CECR5-AS1 Gene

miRTarBase miRNAs that target CECR5-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CECR5-AS1 Gene

Localization for CECR5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CECR5-AS1 Gene

Pathways & Interactions for CECR5-AS1 Gene

SuperPathways for CECR5-AS1 Gene

No Data Available

Interacting Proteins for CECR5-AS1 Gene

Gene Ontology (GO) - Biological Process for CECR5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CECR5-AS1 Gene

Transcripts for CECR5-AS1 Gene

mRNA/cDNA for CECR5-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CECR5-AS1 Gene

CECR5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CECR5-AS1 Gene

No ASD Table

Relevant External Links for CECR5-AS1 Gene

GeneLoc Exon Structure for
CECR5-AS1
ECgene alternative splicing isoforms for
CECR5-AS1

Expression for CECR5-AS1 Gene

mRNA expression in normal human tissues for CECR5-AS1 Gene

SOURCE GeneReport for Unigene cluster for CECR5-AS1 Gene:

Hs.660066
genes like me logo Genes that share expression patterns with CECR5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CECR5-AS1 Gene

Orthologs for CECR5-AS1 Gene

Evolution for CECR5-AS1 Gene

ENSEMBL:
Gene Tree for CECR5-AS1 (if available)
TreeFam:
Gene Tree for CECR5-AS1 (if available)

No data available for Orthologs for CECR5-AS1 Gene

Paralogs for CECR5-AS1 Gene

No data available for Paralogs for CECR5-AS1 Gene

Variants for CECR5-AS1 Gene

Sequence variations from dbSNP and Humsavar for CECR5-AS1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1059331 -- 17,165,055(+) ATACA(C/T)ACTCA intron-variant
rs112134697 -- 17,158,216(+) CTCGG(C/G)AGGCT intron-variant, upstream-variant-2KB
rs113399928 -- 17,163,010(+) TCTTT(C/T)GTATT intron-variant
rs113824702 -- 17,157,426(+) TTACA(C/T)AGATG intron-variant, upstream-variant-2KB
rs114024499 -- 17,159,550(+) GATCC(C/T)GGTAA intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CECR5-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
nsv1064641 CNV gain 25217958
nsv1067241 CNV loss 25217958
nsv509805 CNV insertion 20534489
nsv828924 CNV gain 20364138

Relevant External Links for CECR5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CECR5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CECR5-AS1 Gene

Disorders for CECR5-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CECR5-AS1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CECR5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CECR5-AS1
genes like me logo Genes that share disorders with CECR5-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR5-AS1 Gene

Publications for CECR5-AS1 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz T.K. … McDermid H.E. (Genome Res. 2001) 2 3 64

Products for CECR5-AS1 Gene

Sources for CECR5-AS1 Gene

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