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Aliases for CECR3 Gene

Subcategory (RNA class) for CECR3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CECR3 Gene

  • Cat Eye Syndrome Chromosome Region, Candidate 3 (Non-Protein Coding) 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 3 2

External Ids for CECR3 Gene

Previous GeneCards Identifiers for CECR3 Gene

  • GC22U990108
  • GC22M017738

Summaries for CECR3 Gene

GeneCards Summary for CECR3 Gene

CECR3 (Cat Eye Syndrome Chromosome Region, Candidate 3 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CECR3 include Cat Eye Syndrome.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CECR3 Gene

Genomics for CECR3 Gene

Regulatory Elements for CECR3 Gene

Enhancers for CECR3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G017216 1.4 FANTOM5 Ensembl ENCODE 12.5 +47.7 47714 5.7 PKNOX1 ZBTB40 ZNF121 RELB ETV6 IKZF2 CEBPB JUNB TBX21 SP1 CECR3 CECR2 ADA2 ATP6V1E1 BCL2L13 IL17RA GC22P017216
GH22G017074 1.3 Ensembl ENCODE dbSUPER 10.4 +191.3 191308 1.2 ARNT KLF17 RAD21 SCRT2 FOS ZNF391 EGR2 ZNF654 YY2 REST CECR7 LINC01664 CECR6 ADA2 CECR3 ENSG00000273203 ENSG00000273442
GH22G017233 1 FANTOM5 ENCODE 13 +32.1 32068 3.2 CTCF ZBTB11 CHD7 ZNF623 JUND POLR2A POU5F1 CTBP2 KDM1A PRDM1 CECR3 CECR2 ADA2 GAB4 HDHD5
GH22G017475 1.1 Ensembl ENCODE 11 -210.3 -210263 2.0 HDAC1 PKNOX1 ATF1 DMAP1 ZNF366 SCRT2 KLF7 CREM ZNF263 SP3 CECR2 CECR3 ADA2 GC22M017518 CLCP1
GH22G017077 1 ENCODE dbSUPER 10.4 +189.2 189218 0.8 CTCF ESRRA RB1 ARID4B RAD21 ZNF143 SMC3 FOS DNMT1 SCRT1 CECR6 LINC01664 ADA2 CECR3 ENSG00000273442 ENSG00000273203
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CECR3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CECR3 Gene

Chromosome:
22
Start:
17,256,859 bp from pter
End:
17,266,733 bp from pter
Size:
9,875 bases
Orientation:
Minus strand

Genomic View for CECR3 Gene

Genes around CECR3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CECR3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CECR3 Gene

Proteins for CECR3 Gene

Post-translational modifications for CECR3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CECR3 Gene

Domains & Families for CECR3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CECR3 Gene

Function for CECR3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR3 Gene

Localization for CECR3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CECR3 Gene

Pathways & Interactions for CECR3 Gene

SuperPathways for CECR3 Gene

No Data Available

Interacting Proteins for CECR3 Gene

Gene Ontology (GO) - Biological Process for CECR3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CECR3 Gene

Drugs & Compounds for CECR3 Gene

No Compound Related Data Available

Transcripts for CECR3 Gene

mRNA/cDNA for CECR3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CECR3 Gene

No ASD Table

Relevant External Links for CECR3 Gene

GeneLoc Exon Structure for
CECR3
ECgene alternative splicing isoforms for
CECR3

Expression for CECR3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CECR3 Gene

mRNA differential expression in normal tissues according to GTEx for CECR3 Gene

This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x6.3), Pancreas (x5.9), Colon - Transverse (x5.0), and Muscle - Skeletal (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of CECR3 Gene:

CECR3

SOURCE GeneReport for Unigene cluster for CECR3 Gene:

Hs.517394
genes like me logo Genes that share expression patterns with CECR3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CECR3 Gene

Orthologs for CECR3 Gene

Evolution for CECR3 Gene

ENSEMBL:
Gene Tree for CECR3 (if available)
TreeFam:
Gene Tree for CECR3 (if available)

No data available for Orthologs for CECR3 Gene

Paralogs for CECR3 Gene

No data available for Paralogs for CECR3 Gene

Variants for CECR3 Gene

Sequence variations from dbSNP and Humsavar for CECR3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000221324 -- 17,258,852(+) ACACT(C/G)AATGA intron-variant
rs1000251032 -- 17,259,060(+) CCAAA(C/T)TGTTG intron-variant
rs1000422988 -- 17,264,457(+) GGGTA(C/T)TCACA intron-variant
rs1000920074 -- 17,268,283(+) TGCCT(C/G)TCACC upstream-variant-2KB
rs1001222660 -- 17,257,893(+) GATGA(-/T)TTTTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CECR3 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
esv3647213 CNV gain 21293372
esv3893427 CNV gain 25118596
nsv1067241 CNV loss 25217958
nsv476663 CNV novel sequence insertion 20440878
nsv509805 CNV insertion 20534489

Relevant External Links for CECR3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CECR3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CECR3 Gene

Disorders for CECR3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CECR3 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards
Search CECR3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CECR3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CECR3
genes like me logo Genes that share disorders with CECR3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR3 Gene

Publications for CECR3 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz T.K. … McDermid H.E. (Genome Res. 2001) 2 3 64

Products for CECR3 Gene

Sources for CECR3 Gene

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