Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CECR3 Gene

Subcategory (RNA class) for CECR3 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for CECR3 Gene

  • Cat Eye Syndrome Chromosome Region, Candidate 3 (Non-Protein Coding) 2 3 5
  • Cat Eye Syndrome Chromosome Region, Candidate 3 2

External Ids for CECR3 Gene

Previous GeneCards Identifiers for CECR3 Gene

  • GC22U990108
  • GC22M017738

Summaries for CECR3 Gene

GeneCards Summary for CECR3 Gene

CECR3 (Cat Eye Syndrome Chromosome Region, Candidate 3 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with CECR3 include Cat Eye Syndrome.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CECR3 Gene

Genomics for CECR3 Gene

Regulatory Elements for CECR3 Gene

Enhancers for CECR3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F017233 1.1 FANTOM5 Ensembl ENCODE 13 +32.1 32068 3.2 CTCF ZBTB11 ZNF623 JUND POLR2A POU5F1 CTBP2 KDM1A PRDM1 CECR3 CECR2 CECR1 GAB4 CECR5
GH22F017216 0.7 FANTOM5 ENCODE 12.5 +47.7 47714 5.7 PKNOX1 ZSCAN18 TEAD4 CEBPG EBF1 ZBTB40 RELA ZNF664 ZNF121 POLR2A CECR3 CECR2 CECR1 ATP6V1E1 BCL2L13 IL17RA GC22P017216
GH22F017198 0.2 ENCODE 11.8 +67.4 67429 2.5 BRD4 RFX1 MAX ZNF384 ZFHX2 JUND SMARCA4 POLR2A ZNF341 KDM1A CECR1 CECR3 CECR2 CECR6 LINC01664 GC22P017193 GC22M017211
GH22F017194 0.2 ENCODE 11.7 +72.3 72313 0.5 ADNP CEBPB CEBPG YY1 CECR1 CECR3 CECR2 CECR6 LINC01664 GC22P017193 GC22M017211
GH22F017191 0.5 Ensembl 11.7 +75.4 75368 0.5 ZNF589 ZNF766 BCL11A ID3 PRDM10 REST FOS CECR1 CECR3 CECR2 CECR6 LINC01664 RPL32P5 CECR5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around CECR3 on UCSC Golden Path with GeneCards custom track

Genomic Location for CECR3 Gene

17,256,859 bp from pter
17,266,733 bp from pter
9,875 bases
Minus strand

Genomic View for CECR3 Gene

Genes around CECR3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CECR3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CECR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CECR3 Gene

Proteins for CECR3 Gene

Post-translational modifications for CECR3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CECR3 Gene

Domains & Families for CECR3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CECR3 Gene

Function for CECR3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CECR3 Gene

Localization for CECR3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CECR3 Gene

Pathways & Interactions for CECR3 Gene

SuperPathways for CECR3 Gene

No Data Available

Interacting Proteins for CECR3 Gene

Gene Ontology (GO) - Biological Process for CECR3 Gene


No data available for Pathways by source and SIGNOR curated interactions for CECR3 Gene

Transcripts for CECR3 Gene

mRNA/cDNA for CECR3 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CECR3 Gene

No ASD Table

Relevant External Links for CECR3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CECR3 Gene

mRNA expression in normal human tissues for CECR3 Gene

mRNA differential expression in normal tissues according to GTEx for CECR3 Gene

This gene is overexpressed in Testis (x7.1), Kidney - Cortex (x6.3), Pancreas (x5.9), Colon - Transverse (x5.0), and Muscle - Skeletal (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of CECR3 Gene:


SOURCE GeneReport for Unigene cluster for CECR3 Gene:

genes like me logo Genes that share expression patterns with CECR3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for CECR3 Gene

Orthologs for CECR3 Gene

Evolution for CECR3 Gene

Gene Tree for CECR3 (if available)
Gene Tree for CECR3 (if available)

No data available for Orthologs for CECR3 Gene

Paralogs for CECR3 Gene

No data available for Paralogs for CECR3 Gene

Variants for CECR3 Gene

Sequence variations from dbSNP and Humsavar for CECR3 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs10433302 -- 17,257,431(+) CAAGA(A/G)GGAGG nc-transcript-variant
rs111275498 -- 17,259,934(+) GCACT(C/G)CAGCC intron-variant
rs111728774 -- 17,262,250(+) GGTTA(A/C)TCGGC intron-variant
rs111912510 -- 17,263,780(+) TCAGC(A/G)CCTGG intron-variant
rs111953598 -- 17,258,294(+) CTCCT(C/G)GAAAC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CECR3 Gene

Variant ID Type Subtype PubMed ID
esv3647209 CNV gain 21293372
esv3647213 CNV gain 21293372
esv3893427 CNV gain 25118596
nsv1067241 CNV loss 25217958
nsv476663 CNV novel sequence insertion 20440878
nsv509805 CNV insertion 20534489

Relevant External Links for CECR3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CECR3 Gene

Disorders for CECR3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CECR3 Gene - From: GeneCards

Disorder Aliases PubMed IDs
cat eye syndrome
  • ces
- elite association - COSMIC cancer census association via MalaCards
Search CECR3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CECR3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with CECR3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CECR3 Gene

Publications for CECR3 Gene

  1. Analysis of the cat eye syndrome critical region in humans and the region of conserved synteny in mice: a search for candidate genes at or near the human chromosome 22 pericentromere. (PMID: 11381032) Footz T.K. … McDermid H.E. (Genome Res. 2001) 2 3 64

Products for CECR3 Gene

Sources for CECR3 Gene

Loading form....