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Aliases for CEBPB-AS1 Gene

Subcategory (RNA class) for CEBPB-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CEBPB-AS1 Gene

  • CEBPB Antisense RNA 1 2 3 5

External Ids for CEBPB-AS1 Gene

Summaries for CEBPB-AS1 Gene

GeneCards Summary for CEBPB-AS1 Gene

CEBPB-AS1 (CEBPB Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CEBPB-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEBPB-AS1 Gene

Genomics for CEBPB-AS1 Gene

Regulatory Elements for CEBPB-AS1 Gene


Promoters for CEBPB-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000138419 -31 3801 MLX ZFP64 YBX1 DMAP1 YY1 ZNF143 SP3 SSRP1 ZNF610 GLIS1

Genomic Locations for CEBPB-AS1 Gene

Genomic Locations for CEBPB-AS1 Gene
chr20:50,184,598-50,192,069
(GRCh38/hg38)
Size:
7,472 bases
Orientation:
Minus strand

Genomic View for CEBPB-AS1 Gene

Genes around CEBPB-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEBPB-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEBPB-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEBPB-AS1 Gene

Proteins for CEBPB-AS1 Gene

Post-translational modifications for CEBPB-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEBPB-AS1 Gene

Domains & Families for CEBPB-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEBPB-AS1 Gene

Function for CEBPB-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEBPB-AS1 Gene

Localization for CEBPB-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CEBPB-AS1 Gene

Pathways & Interactions for CEBPB-AS1 Gene

SuperPathways for CEBPB-AS1 Gene

No Data Available

Interacting Proteins for CEBPB-AS1 Gene

Gene Ontology (GO) - Biological Process for CEBPB-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEBPB-AS1 Gene

Drugs & Compounds for CEBPB-AS1 Gene

No Compound Related Data Available

Transcripts for CEBPB-AS1 Gene

mRNA/cDNA for CEBPB-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CEBPB-AS1 Gene

No ASD Table

Relevant External Links for CEBPB-AS1 Gene

GeneLoc Exon Structure for
CEBPB-AS1
ECgene alternative splicing isoforms for
CEBPB-AS1

Expression for CEBPB-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEBPB-AS1 Gene

Orthologs for CEBPB-AS1 Gene

Evolution for CEBPB-AS1 Gene

ENSEMBL:
Gene Tree for CEBPB-AS1 (if available)
TreeFam:
Gene Tree for CEBPB-AS1 (if available)

No data available for Orthologs for CEBPB-AS1 Gene

Paralogs for CEBPB-AS1 Gene

No data available for Paralogs for CEBPB-AS1 Gene

Variants for CEBPB-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEBPB-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000008468 -- 50,191,091(+) CGCCT(G/T)CCTTT intron-variant, reference, missense, utr-variant-5-prime
rs1000093408 -- 50,185,332(+) AGGTT(A/G)GAGTG nc-transcript-variant
rs1000232310 -- 50,184,639(+) TGACA(C/T)ATAAT nc-transcript-variant
rs1000467250 -- 50,190,593(+) ATCCC(C/G/T)GGGCG intron-variant, utr-variant-5-prime
rs1000571319 -- 50,186,003(+) CAAAC(A/G)AAAAA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for CEBPB-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv828736 CNV gain 20364138
nsv1061982 CNV loss 25217958
esv34129 CNV loss 18971310
dgv702n67 CNV gain 20364138

Relevant External Links for CEBPB-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEBPB-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEBPB-AS1 Gene

Disorders for CEBPB-AS1 Gene

Relevant External Links for CEBPB-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CEBPB-AS1

No disorders were found for CEBPB-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEBPB-AS1 Gene

Publications for CEBPB-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for CEBPB-AS1 Gene

Sources for CEBPB-AS1 Gene

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