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Aliases for CEBPA-AS1 Gene

Subcategory (RNA class) for CEBPA-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CEBPA-AS1 Gene

  • CEBPA Antisense RNA 1 (Head To Head) 2 3 5
  • CEBPA Antisense RNA 1 (Non-Protein Coding) 2
  • CEBPA Antisense RNA 1 2

External Ids for CEBPA-AS1 Gene

Previous GeneCards Identifiers for CEBPA-AS1 Gene

  • GC19P033795
  • GC19P033803
  • GC19P033806

Summaries for CEBPA-AS1 Gene

GeneCards Summary for CEBPA-AS1 Gene

CEBPA-AS1 (CEBPA Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CEBPA-AS1 Gene

Genomics for CEBPA-AS1 Gene

Regulatory Elements for CEBPA-AS1 Gene

Enhancers for CEBPA-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G033296 1.7 FANTOM5 ENCODE dbSUPER 12.2 -1.5 -1452 10.6 MLX CREB3L1 AGO1 DMAP1 FEZF1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 GPATCH1 LSM14A KIAA0355 PDCD5 CEBPA-AS1 CEBPG PEPD SLC7A9 CEBPA ENSG00000267727
GH19G033289 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.4 -10.5 -10518 6.5 PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF302 GPATCH1 LSM14A KIAA0355 PDCD5 CEBPG FAAP24 CHST8 CEBPA-AS1 PEPD CEBPA
GH19G033315 1.1 ENCODE dbSUPER 12.8 +14.3 14290 3.1 KLF1 FOXA2 ZFP64 KLF17 SIN3A MAX BMI1 RAD21 YY1 HIC1 CEBPA-AS1 GPATCH1 CEBPG PEPD GC19P033308 PIR50844 GC19P033333
GH19G033310 1 ENCODE dbSUPER 12.3 +8.3 8299 1.1 CTCF ZNF146 JUN ZIC2 RAD21 ZFHX2 POLR2A ZNF239 ZNF600 ZBTB20 CEBPA-AS1 GC19P033308 PIR50844 GC19P033333
GH19G033288 1.6 Ensembl ENCODE dbSUPER 6 -15.8 -15756 1.0 ARID4B SIN3A ZNF2 ZBTB7B ZNF143 ZNF207 ZNF548 ZNF263 SP3 MXD4 GPATCH1 LSM14A KIAA0355 FAAP24 CEBPG CEBPA-AS1 ENSG00000270212 ENSG00000267580
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CEBPA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CEBPA-AS1 Gene

Chromosome:
19
Start:
33,302,857 bp from pter
End:
33,305,057 bp from pter
Size:
2,201 bases
Orientation:
Plus strand

Genomic View for CEBPA-AS1 Gene

Genes around CEBPA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CEBPA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CEBPA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CEBPA-AS1 Gene

Proteins for CEBPA-AS1 Gene

Post-translational modifications for CEBPA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CEBPA-AS1 Gene

Domains & Families for CEBPA-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CEBPA-AS1 Gene

Function for CEBPA-AS1 Gene

Phenotypes for CEBPA-AS1 Gene

GenomeRNAi human phenotypes for CEBPA-AS1:
genes like me logo Genes that share phenotypes with CEBPA-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CEBPA-AS1 Gene

Localization for CEBPA-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CEBPA-AS1 Gene

Pathways & Interactions for CEBPA-AS1 Gene

SuperPathways for CEBPA-AS1 Gene

No Data Available

Interacting Proteins for CEBPA-AS1 Gene

Gene Ontology (GO) - Biological Process for CEBPA-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CEBPA-AS1 Gene

Drugs & Compounds for CEBPA-AS1 Gene

No Compound Related Data Available

Transcripts for CEBPA-AS1 Gene

mRNA/cDNA for CEBPA-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(14) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CEBPA-AS1 Gene

CEBPA antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CEBPA-AS1 Gene

No ASD Table

Relevant External Links for CEBPA-AS1 Gene

GeneLoc Exon Structure for
CEBPA-AS1
ECgene alternative splicing isoforms for
CEBPA-AS1

Expression for CEBPA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CEBPA-AS1 Gene

SOURCE GeneReport for Unigene cluster for CEBPA-AS1 Gene:

Hs.287521
genes like me logo Genes that share expression patterns with CEBPA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CEBPA-AS1 Gene

Orthologs for CEBPA-AS1 Gene

Evolution for CEBPA-AS1 Gene

ENSEMBL:
Gene Tree for CEBPA-AS1 (if available)
TreeFam:
Gene Tree for CEBPA-AS1 (if available)

No data available for Orthologs for CEBPA-AS1 Gene

Paralogs for CEBPA-AS1 Gene

No data available for Paralogs for CEBPA-AS1 Gene

Variants for CEBPA-AS1 Gene

Sequence variations from dbSNP and Humsavar for CEBPA-AS1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs121912791 Pathogenic 33,302,267(-) CCCCG(G/T)AGCCG upstream-variant-2KB, reference, stop-gained, utr-variant-5-prime
rs137852728 Pathogenic 33,302,347(-) CCCCC(-/C)GCACG upstream-variant-2KB, reference, frameshift-variant, utr-variant-5-prime
rs137852729 Pathogenic 33,302,346(-) CCCCC(-/C)GCACG upstream-variant-2KB, reference, frameshift-variant, utr-variant-5-prime
rs137852730 Pathogenic 33,302,274(-) CCTGC(-/C)GCCCC upstream-variant-2KB, reference, frameshift-variant, utr-variant-5-prime
rs137852731 Pathogenic 33,302,213(-) CCTAC(-/CTAC)ATCGA upstream-variant-2KB, reference, frameshift-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CEBPA-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2758755 CNV gain 17122850
nsv2463 CNV deletion 18451855
nsv833808 CNV loss 17160897

Relevant External Links for CEBPA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CEBPA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CEBPA-AS1 Gene

Disorders for CEBPA-AS1 Gene

Relevant External Links for CEBPA-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CEBPA-AS1

No disorders were found for CEBPA-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CEBPA-AS1 Gene

Publications for CEBPA-AS1 Gene

  1. The combination of circulating long noncoding RNAs AK001058, INHBA-AS1, MIR4435-2HG, and CEBPA-AS1 fragments in plasma serve as diagnostic markers for gastric cancer. (PMID: 28423525) Ke D. … Zheng X. (Oncotarget 2017) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for CEBPA-AS1 Gene

Sources for CEBPA-AS1 Gene

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