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Aliases for CDV3 Gene

Aliases for CDV3 Gene

  • CDV3 Homolog (Mouse) 2 3
  • H41 3 4
  • Carnitine Deficiency-Associated Gene Expressed In Ventricle 3 3
  • Protein CDV3 Homolog 3

External Ids for CDV3 Gene

Summaries for CDV3 Gene

GeneCards Summary for CDV3 Gene

CDV3 (CDV3 Homolog (Mouse)) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDV3 Gene

Genomics for CDV3 Gene

Genomic Location for CDV3 Gene

Start:
133,573,590 bp from pter
End:
133,590,274 bp from pter
Size:
16,685 bases
Orientation:
Plus strand

Genomic View for CDV3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDV3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDV3 Gene

Regulatory Elements for CDV3 Gene

Proteins for CDV3 Gene

  • Protein details for CDV3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UKY7-CDV3_HUMAN
    Recommended name:
    Protein CDV3 homolog
    Protein Accession:
    Q9UKY7
    Secondary Accessions:
    • B3KUC2
    • Q96IP9

    Protein attributes for CDV3 Gene

    Size:
    258 amino acids
    Molecular mass:
    27335 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CDV3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CDV3 Gene

Proteomics data for CDV3 Gene at MOPED

Post-translational modifications for CDV3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CDV3 Gene

Domains for CDV3 Gene

Protein Domains for CDV3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CDV3 Gene

Graphical View of Domain Structure for InterPro Entry

Q9UKY7

UniProtKB/Swiss-Prot:

CDV3_HUMAN
Family:
  • Belongs to the CDV3 family.:
    • Q9UKY7
genes like me logo Genes that share domains with CDV3: view

No data available for Gene Families for CDV3 Gene

Function for CDV3 Gene

Gene Ontology (GO) - Molecular Function for CDV3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
genes like me logo Genes that share ontologies with CDV3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for CDV3 Gene

Localization for CDV3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CDV3 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CDV3 Gene COMPARTMENTS Subcellular localization image for CDV3 gene
Compartment Confidence
nucleus 4
cytosol 3
plasma membrane 3

Gene Ontology (GO) - Cellular Components for CDV3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with CDV3: view

Pathways for CDV3 Gene

SuperPathways for CDV3 Gene

No Data Available

Interacting Proteins for CDV3 Gene

Gene Ontology (GO) - Biological Process for CDV3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008283 cell proliferation NAS 10497265
genes like me logo Genes that share ontologies with CDV3: view

No data available for Pathways by source for CDV3 Gene

Transcripts for CDV3 Gene

Unigene Clusters for CDV3 Gene

CDV3 homolog (mouse):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CDV3 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8
SP1: - - - -
SP2: - -
SP3:
SP4: - - -
SP5:

Relevant External Links for CDV3 Gene

GeneLoc Exon Structure for
CDV3
ECgene alternative splicing isoforms for
CDV3

Expression for CDV3 Gene

mRNA expression in normal human tissues for CDV3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CDV3 Gene

This gene is overexpressed in Muscle - Skeletal (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for CDV3 Gene

SOURCE GeneReport for Unigene cluster for CDV3 Gene Hs.518265

mRNA Expression by UniProt/SwissProt for CDV3 Gene

Q9UKY7-CDV3_HUMAN
Tissue specificity: Expression levels correlate with those of HER-2/neu in breast cancer cells.
genes like me logo Genes that share expressions with CDV3: view

Orthologs for CDV3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CDV3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDV3 35
  • 99.87 (n)
  • 99.61 (a)
CDV3 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 91 (a)
OneToMany
-- 36
  • 74 (a)
OneToMany
CDV3 35
  • 90.83 (n)
  • 91.47 (a)
dog
(Canis familiaris)
Mammalia CDV3 35
  • 95.1 (n)
  • 96.61 (a)
CDV3 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cdv3 16
Cdv3 36
  • 75 (a)
OneToOne
LOC102639170 35
  • 88.95 (n)
  • 90.06 (a)
oppossum
(Monodelphis domestica)
Mammalia CDV3 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CDV3 36
  • 85 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cdv3 35
  • 81.88 (n)
  • 80.1 (a)
chicken
(Gallus gallus)
Aves CDV3 35
  • 69.65 (n)
  • 63.68 (a)
CDV3 36
  • 74 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CDV3 36
  • 58 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia cdv3-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia cdv3 35
  • 62.57 (n)
  • 56.15 (a)
zebrafish
(Danio rerio)
Actinopterygii cdv3 35
  • 60 (n)
  • 56.36 (a)
cdv3 36
  • 50 (a)
OneToOne
wufa12e09 35
Species with no ortholog for CDV3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDV3 Gene

ENSEMBL:
Gene Tree for CDV3 (if available)
TreeFam:
Gene Tree for CDV3 (if available)

Paralogs for CDV3 Gene

Pseudogenes.org Pseudogenes for CDV3 Gene

genes like me logo Genes that share paralogs with CDV3: view

No data available for Paralogs for CDV3 Gene

Variants for CDV3 Gene

Sequence variations from dbSNP and Humsavar for CDV3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1073196 -- 133,578,962(-) AAATA(C/T)TCTCT intron-variant
rs1992634 -- 133,576,979(-) tccca(A/G)ctact intron-variant
rs1992635 -- 133,576,972(-) ctact(A/C/G/T)aggag intron-variant
rs1992637 -- 133,576,917(-) tgagc(C/T)gagat intron-variant
rs3821508 -- 133,574,774(+) TTCCT(A/G)TTGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CDV3 Gene

Variant ID Type Subtype PubMed ID
esv27719 CNV Loss 19812545
esv2674678 CNV Deletion 23128226

Relevant External Links for CDV3 Gene

HapMap Linkage Disequilibrium report
CDV3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CDV3 Gene

Disorders for CDV3 Gene

No disorders were found for CDV3 Gene.

No data available for UniProtKB/Swiss-Prot for CDV3 Gene

Publications for CDV3 Gene

  1. Identification of differentially expressed genes associated with HER- 2/neu overexpression in human breast cancer cells. (PMID: 10497265) Oh J.J. … Slamon D.J. (Nucleic Acids Res. 1999) 2 3 4
  2. Novel mRNA molecules are induced in hypertrophied ventricles of carnitine-deficient mice and belong to a family of up-regulated gene in cells overexpressing c-erbB-2. (PMID: 12359334) Fukumaru S. … Saheki T. (Biochim. Biophys. Acta 2002) 3 23
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Robust phosphoproteomic profiling of tyrosine phosphorylation sites from human T cells using immobilized metal affinity chromatography and tandem mass spectrometry. (PMID: 15144186) Brill L.M. … Peters E.C. (Anal. Chem. 2004) 3 4
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3

Products for CDV3 Gene

Sources for CDV3 Gene

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