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Aliases for CDRT8 Gene

Subcategory (RNA class) for CDRT8 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDRT8 Gene

  • CMT1A Duplicated Region Transcript 8 2 3 5

External Ids for CDRT8 Gene

Previous GeneCards Identifiers for CDRT8 Gene

  • GC17U990292
  • GC17M015009

Summaries for CDRT8 Gene

GeneCards Summary for CDRT8 Gene

CDRT8 (CMT1A Duplicated Region Transcript 8) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CDRT8 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDRT8 Gene

Genomics for CDRT8 Gene

Regulatory Elements for CDRT8 Gene

Enhancers for CDRT8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H014299 2 FANTOM5 Ensembl ENCODE dbSUPER 14.6 +801.1 801148 11 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B CDRT15P1 HS3ST3B1 ENSG00000262786 ENSG00000266744 RPL23AP76 LINC02096 CDRT7 LOC101928475 CDRT8 LINC02093
GH17H015038 0.4 ENCODE 6.1 +67.2 67209 0 FOS CDRT8 GC17P015032 GC17P015048
GH17H015039 0.2 ENCODE 6.6 +66.6 66580 0 CDRT8 GC17P015048 GC17P015032
GH17H015123 0.4 ENCODE 0.4 -17.7 -17738 1 MNT MAFK RNU6-799P TEKT3 CDRT8 GC17P015164
GH17H015121 0.2 ENCODE 0.4 -15.5 -15452 0 CDRT8 GC17P015164
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDRT8 on UCSC Golden Path with GeneCards custom track

Genomic Location for CDRT8 Gene

Chromosome:
17
Start:
15,104,985 bp from pter
End:
15,106,187 bp from pter
Size:
1,203 bases
Orientation:
Minus strand

Genomic View for CDRT8 Gene

Genes around CDRT8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDRT8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDRT8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT8 Gene

Proteins for CDRT8 Gene

Post-translational modifications for CDRT8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDRT8 Gene

Domains & Families for CDRT8 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDRT8 Gene

Function for CDRT8 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CDRT8
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDRT8 Gene

Localization for CDRT8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDRT8 Gene

Pathways & Interactions for CDRT8 Gene

SuperPathways for CDRT8 Gene

No Data Available

Interacting Proteins for CDRT8 Gene

Gene Ontology (GO) - Biological Process for CDRT8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDRT8 Gene

Drugs & Compounds for CDRT8 Gene

No Compound Related Data Available

Transcripts for CDRT8 Gene

mRNA/cDNA for CDRT8 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CDRT8
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT8 Gene

No ASD Table

Relevant External Links for CDRT8 Gene

GeneLoc Exon Structure for
CDRT8
ECgene alternative splicing isoforms for
CDRT8

Expression for CDRT8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDRT8 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT8 Gene

This gene is overexpressed in Testis (x41.3).

NURSA nuclear receptor signaling pathways regulating expression of CDRT8 Gene:

CDRT8
genes like me logo Genes that share expression patterns with CDRT8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDRT8 Gene

Orthologs for CDRT8 Gene

Evolution for CDRT8 Gene

ENSEMBL:
Gene Tree for CDRT8 (if available)
TreeFam:
Gene Tree for CDRT8 (if available)

No data available for Orthologs for CDRT8 Gene

Paralogs for CDRT8 Gene

No data available for Paralogs for CDRT8 Gene

Variants for CDRT8 Gene

Sequence variations from dbSNP and Humsavar for CDRT8 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000260121 -- 15,105,695(+) ATCAA(-/T)TTTTT intron-variant
rs1000291148 -- 15,105,445(+) GTTGC(A/C)CAGGC nc-transcript-variant
rs1000948708 -- 15,105,654(+) GTGAA(A/C)ATGTA intron-variant
rs1003951140 -- 15,104,975(+) AAAAA(A/T)GAATC downstream-variant-500B
rs1004062388 -- 15,104,722(+) CCTGA(A/G)TTGGC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for CDRT8 Gene

Variant ID Type Subtype PubMed ID
esv3640045 CNV loss 21293372
esv3640046 CNV gain 21293372
esv3640056 CNV loss 21293372
esv3892963 CNV loss 25118596
nsv1064686 CNV loss 25217958

Relevant External Links for CDRT8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDRT8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDRT8 Gene

Disorders for CDRT8 Gene

Relevant External Links for CDRT8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDRT8

No disorders were found for CDRT8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDRT8 Gene

Publications for CDRT8 Gene

  1. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K … Birren B (Genome research 2001) 2 3 60

Products for CDRT8 Gene

Sources for CDRT8 Gene

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