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Aliases for CDRT15P1 Gene

Aliases for CDRT15P1 Gene

  • CMT1A Duplicated Region Transcript 15 Pseudogene 1 2 3 5
  • CMT1A Duplicated Region Transcript 15 Pseudogene 2
  • CDRT15P 3

External Ids for CDRT15P1 Gene

Previous HGNC Symbols for CDRT15P1 Gene

  • CDRT15P

Previous GeneCards Identifiers for CDRT15P1 Gene

  • GC17P013929

Summaries for CDRT15P1 Gene

GeneCards Summary for CDRT15P1 Gene

CDRT15P1 (CMT1A Duplicated Region Transcript 15 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDRT15P1 Gene

Genomics for CDRT15P1 Gene

Regulatory Elements for CDRT15P1 Gene

Enhancers for CDRT15P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G014068 1.1 ENCODE 25.5 +45.5 45542 2.9 PKNOX1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 KLF13 CDRT15P1 CDRT15 COX10-AS1 ENSG00000252305
GH17G014061 0.8 Ensembl ENCODE 20.4 +37.8 37804 2.0 ZNF217 CTCF GATA3 GATA2 FOS CDRT15P1 GC17M014060 COX10
GH17G014196 1.4 FANTOM5 Ensembl ENCODE 7 +175.8 175771 8.4 HDAC1 CTCF ESRRA KLF1 ZSCAN4 ZNF133 KLF17 RAD21 ZNF121 ZFHX2 CDRT15 COX10 CDRT15P1 ENSG00000231595 HS3ST3B1 ENSG00000252305
GH17G014208 0.9 ENCODE 7 +184.9 184937 1.8 FOXA2 ARID4B YY1 TCF12 ZNF766 ZHX2 ATF4 SMARCA4 HNF4A KDM1A CDRT15 COX10 CDRT15P1 ENSG00000231595 HS3ST3B1 ENSG00000252305
GH17G014004 0.2 ENCODE 30.7 -19.2 -19179 0.9 CDRT15P1 CDRT15 GC17P014025 ENSG00000266744
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDRT15P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CDRT15P1 Gene

Chromosome:
17
Start:
14,024,498 bp from pter
End:
14,025,598 bp from pter
Size:
1,101 bases
Orientation:
Plus strand

Genomic View for CDRT15P1 Gene

Genes around CDRT15P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDRT15P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDRT15P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT15P1 Gene

Proteins for CDRT15P1 Gene

Post-translational modifications for CDRT15P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDRT15P1 Gene

Domains & Families for CDRT15P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDRT15P1 Gene

Function for CDRT15P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDRT15P1 Gene

Localization for CDRT15P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDRT15P1 Gene

Pathways & Interactions for CDRT15P1 Gene

SuperPathways for CDRT15P1 Gene

No Data Available

Interacting Proteins for CDRT15P1 Gene

Gene Ontology (GO) - Biological Process for CDRT15P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDRT15P1 Gene

Transcripts for CDRT15P1 Gene

mRNA/cDNA for CDRT15P1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CDRT15P1 Gene

CMT1A duplicated region transcript 15 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT15P1 Gene

No ASD Table

Relevant External Links for CDRT15P1 Gene

GeneLoc Exon Structure for
CDRT15P1
ECgene alternative splicing isoforms for
CDRT15P1

Expression for CDRT15P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDRT15P1 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT15P1 Gene

This gene is overexpressed in Testis (x12.4).

NURSA nuclear receptor signaling pathways regulating expression of CDRT15P1 Gene:

CDRT15P1

SOURCE GeneReport for Unigene cluster for CDRT15P1 Gene:

Hs.709554
genes like me logo Genes that share expression patterns with CDRT15P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDRT15P1 Gene

Orthologs for CDRT15P1 Gene

Evolution for CDRT15P1 Gene

ENSEMBL:
Gene Tree for CDRT15P1 (if available)
TreeFam:
Gene Tree for CDRT15P1 (if available)

No data available for Orthologs for CDRT15P1 Gene

Paralogs for CDRT15P1 Gene

No data available for Paralogs for CDRT15P1 Gene

Variants for CDRT15P1 Gene

Sequence variations from dbSNP and Humsavar for CDRT15P1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000384811 -- 14,023,956(+) GTAGA(C/T)ATTAG upstream-variant-2KB
rs1000478118 -- 14,022,722(+) AGTGA(C/G)GCAGT upstream-variant-2KB
rs1005286476 -- 14,024,798(+) CTGGA(A/T)GACTT nc-transcript-variant
rs1005337020 -- 14,024,545(+) GAGAG(G/T)TTGCT nc-transcript-variant
rs1006523942 -- 14,024,077(+) AGGTG(A/G/T)ACACA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CDRT15P1 Gene

Variant ID Type Subtype PubMed ID
esv2758675 CNV loss 17122850
nsv1056267 CNV gain 25217958
nsv1143850 CNV deletion 24896259
nsv1989 CNV deletion 18451855
nsv574377 CNV gain 21841781
nsv953831 CNV deletion 24416366
nsv978364 CNV duplication 23825009

Relevant External Links for CDRT15P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDRT15P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDRT15P1 Gene

Disorders for CDRT15P1 Gene

Relevant External Links for CDRT15P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDRT15P1

No disorders were found for CDRT15P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDRT15P1 Gene

Publications for CDRT15P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  2. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K. … Birren B. (Genome Res. 2001) 3 64

Products for CDRT15P1 Gene

Sources for CDRT15P1 Gene

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