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Aliases for CDRT15 Gene

Aliases for CDRT15 Gene

  • CMT1A Duplicated Region Transcript 15 2 3

External Ids for CDRT15 Gene

Summaries for CDRT15 Gene

GeneCards Summary for CDRT15 Gene

CDRT15 (CMT1A Duplicated Region Transcript 15) is a Protein Coding gene. An important paralog of this gene is CDRT15L2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDRT15 Gene

Genomics for CDRT15 Gene

Genomic Location for CDRT15 Gene

Start:
14,235,673 bp from pter
End:
14,236,862 bp from pter
Size:
1,190 bases
Orientation:
Minus strand

Genomic View for CDRT15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDRT15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT15 Gene

Regulatory Elements for CDRT15 Gene

Proteins for CDRT15 Gene

  • Protein details for CDRT15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96T59-CDRTF_HUMAN
    Recommended name:
    CMT1A duplicated region transcript 15 protein
    Protein Accession:
    Q96T59
    Secondary Accessions:
    • B2RUU5

    Protein attributes for CDRT15 Gene

    Size:
    188 amino acids
    Molecular mass:
    20651 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDRT15 Gene

Proteomics data for CDRT15 Gene at MOPED

Post-translational modifications for CDRT15 Gene

No Post-translational modifications

Other Protein References for CDRT15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CDRT15 Gene

Domains for CDRT15 Gene

Protein Domains for CDRT15 Gene

ProtoNet:
genes like me logo Genes that share domains with CDRT15: view

No data available for Gene Families and UniProtKB/Swiss-Prot for CDRT15 Gene

Function for CDRT15 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CDRT15 Gene

Localization for CDRT15 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CDRT15 Gene COMPARTMENTS Subcellular localization image for CDRT15 gene
Compartment Confidence
extracellular 2
cytosol 1
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for CDRT15 Gene

Pathways for CDRT15 Gene

SuperPathways for CDRT15 Gene

No Data Available

Interacting Proteins for CDRT15 Gene

Selected Interacting proteins: Q96T59-CDRTF_HUMAN for CDRT15 Gene via MINT

Symbol External ID(s) Details
--

Gene Ontology (GO) - Biological Process for CDRT15 Gene

None

No data available for Pathways by source for CDRT15 Gene

Transcripts for CDRT15 Gene

mRNA/cDNA for CDRT15 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CDRT15 Gene

CMT1A duplicated region transcript 15:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT15 Gene

No ASD Table

Relevant External Links for CDRT15 Gene

GeneLoc Exon Structure for
CDRT15
ECgene alternative splicing isoforms for
CDRT15

Expression for CDRT15 Gene

mRNA expression in normal human tissues for CDRT15 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT15 Gene

This gene is overexpressed in Testis (33.5).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CDRT15 Gene

SOURCE GeneReport for Unigene cluster for CDRT15 Gene Hs.735172

mRNA Expression by UniProt/SwissProt for CDRT15 Gene

Q96T59-CDRTF_HUMAN
Tissue specificity: Expressed in fetal heart, kidney, liver, lung and spleen.
genes like me logo Genes that share expressions with CDRT15: view

Orthologs for CDRT15 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CDRT15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDRT15 36
  • 97.34 (n)
  • 95.21 (a)
CDRT15 37
  • 95 (a)
OneToOne
Species with no ortholog for CDRT15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CDRT15 Gene

ENSEMBL:
Gene Tree for CDRT15 (if available)
TreeFam:
Gene Tree for CDRT15 (if available)

Paralogs for CDRT15 Gene

Paralogs for CDRT15 Gene

genes like me logo Genes that share paralogs with CDRT15: view

Variants for CDRT15 Gene

Sequence variations from dbSNP and Humsavar for CDRT15 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2529907 -- 14,238,342(-) TTTCC(A/G)GGTGG upstream-variant-2KB
rs2529908 -- 14,238,162(-) ttatc(A/G)acagt upstream-variant-2KB
rs4791563 -- 14,236,248(+) TTCAG(C/T)TCCAG intron-variant
rs4791564 -- 14,236,457(+) CCAGC(A/C)TCAGT intron-variant
rs4792453 -- 14,236,786(+) CCTCC(A/G)TTCCT synonymous-codon, reference, utr-variant-5-prime

Relevant External Links for CDRT15 Gene

HapMap Linkage Disequilibrium report
CDRT15

No data available for Structural Variations from Database of Genomic Variants (DGV) for CDRT15 Gene

Disorders for CDRT15 Gene

Relevant External Links for CDRT15

Genetic Association Database (GAD)
CDRT15
genes like me logo Genes that share disorders with CDRT15: view

No data available for UniProtKB/Swiss-Prot for CDRT15 Gene

Publications for CDRT15 Gene

  1. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K. … Birren B. (Genome Res. 2001) 2 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. The SH3 domain of postsynaptic density 95 mediates inflammatory pain through phosphatidylinositol-3-kinase recruitment. (PMID: 20467438) Arbuckle M.I. … Grant S.G. (EMBO Rep. 2010) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for CDRT15 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CDRT15
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CDRT15
    • Block miRNA regulation of CDRT15 using miScript Target Protectors

    Sources for CDRT15 Gene

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