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Aliases for CDRT1 Gene

Aliases for CDRT1 Gene

  • CMT1A Duplicated Region Transcript 1 2 3 5
  • F-Box And WD Repeat Domain Containing 10 Pseudogene 1 2 3
  • F-Box And WD-40 Domain Protein 10 Pseudogene 1 2 3
  • C17ORF1A 3 4
  • C17ORF1 3 4
  • HREP 3 4
  • Charcot-Marie-Tooth Duplicated Region Transcript 1 3
  • FBXW10P1 3
  • C170RF1 3
  • FBXW10B 3
  • SM25H2 3

External Ids for CDRT1 Gene

Previous HGNC Symbols for CDRT1 Gene

  • FBXW10P1

Previous GeneCards Identifiers for CDRT1 Gene

  • GC17U990245
  • GC17M015692
  • GC17M015432
  • GC17M015370
  • GC17M015476
  • GC17M015470

Summaries for CDRT1 Gene

Entrez Gene Summary for CDRT1 Gene

  • Members of the F-box protein family, such as FBXW10, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603034), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]

GeneCards Summary for CDRT1 Gene

CDRT1 (CMT1A Duplicated Region Transcript 1) is a Protein Coding gene. Diseases associated with CDRT1 include hereditary neuropathies. An important paralog of this gene is TRAF7.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDRT1 Gene

Genomics for CDRT1 Gene

Regulatory Elements for CDRT1 Gene

Promoters for CDRT1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CDRT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CDRT1 Gene

Chromosome:
17
Start:
15,565,482 bp from pter
End:
15,619,704 bp from pter
Size:
54,223 bases
Orientation:
Minus strand

Genomic View for CDRT1 Gene

Genes around CDRT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDRT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDRT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT1 Gene

Proteins for CDRT1 Gene

  • Protein details for CDRT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95170-CDRT1_HUMAN
    Recommended name:
    CMT1A duplicated region transcript 1 protein
    Protein Accession:
    O95170
    Secondary Accessions:
    • O43848
    • O95611

    Protein attributes for CDRT1 Gene

    Size:
    752 amino acids
    Molecular mass:
    85370 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • CDRT1 gene is located centromeric to and partially within proximal CMT1A-REP element. CMT1A-REP is a complex binary repeat element flanking a 1.5-Mb DNA region duplicated in Charcot-Marie-Tooth disease type I (CMT1A) or deleted in Hereditary neuropathy (HNPP).
    SequenceCaution:
    • Sequence=AAD10830.1; Type=Frameshift; Positions=165; Evidence={ECO:0000305};

    Alternative splice isoforms for CDRT1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CDRT1 Gene

Proteomics data for CDRT1 Gene at MOPED

Post-translational modifications for CDRT1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CDRT1 Gene

Domains & Families for CDRT1 Gene

Suggested Antigen Peptide Sequences for CDRT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95170

UniProtKB/Swiss-Prot:

CDRT1_HUMAN :
  • Contains 7 WD repeats.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with CDRT1: view

Function for CDRT1 Gene

Molecular function for CDRT1 Gene

GENATLAS Biochemistry:
cadherin-related tumor 1

Phenotypes for CDRT1 Gene

genes like me logo Genes that share phenotypes with CDRT1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDRT1 Gene

Localization for CDRT1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CDRT1 Gene COMPARTMENTS Subcellular localization image for CDRT1 gene
Compartment Confidence
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CDRT1 Gene

Pathways & Interactions for CDRT1 Gene

SuperPathways for CDRT1 Gene

No Data Available

Interacting Proteins for CDRT1 Gene

Gene Ontology (GO) - Biological Process for CDRT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDRT1 Gene

Drugs & Compounds for CDRT1 Gene

No Compound Related Data Available

Transcripts for CDRT1 Gene

mRNA/cDNA for CDRT1 Gene

(2) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CDRT1 Gene

CMT1A duplicated region transcript 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT1 Gene

No ASD Table

Relevant External Links for CDRT1 Gene

GeneLoc Exon Structure for
CDRT1
ECgene alternative splicing isoforms for
CDRT1

Expression for CDRT1 Gene

mRNA expression in normal human tissues for CDRT1 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT1 Gene

This gene is overexpressed in Esophagus - Mucosa (x7.0) and Testis (x6.6).

SOURCE GeneReport for Unigene cluster for CDRT1 Gene Hs.548021

mRNA Expression by UniProt/SwissProt for CDRT1 Gene

O95170-CDRT1_HUMAN
Tissue specificity: Expressed in pancreas, heart and skeletal muscle.
genes like me logo Genes that share expression patterns with CDRT1: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for CDRT1 Gene

Orthologs for CDRT1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CDRT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDRT1 35
  • 99.07 (n)
  • 98.39 (a)
CDRT1 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 35 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 31 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 23 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 27 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii fbxw10 36
  • 22 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PRP46 36
  • 16 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2090 36
  • 6 (a)
OneToMany
Species with no ortholog for CDRT1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDRT1 Gene

ENSEMBL:
Gene Tree for CDRT1 (if available)
TreeFam:
Gene Tree for CDRT1 (if available)

Paralogs for CDRT1 Gene

(2) SIMAP similar genes for CDRT1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with CDRT1: view

Variants for CDRT1 Gene

Sequence variations from dbSNP and Humsavar for CDRT1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs8078150 - 15,593,416(+) ATTGA(A/G)GAAAT reference, missense
rs6365 -- 15,589,496(-) GGAAC(A/C/G/T)CAGGA intron-variant
rs151439 -- 15,590,320(-) CCAGT(C/T)CCTCC intron-variant
rs151440 -- 15,590,155(-) GAGAC(A/G)GTGGC intron-variant
rs151442 -- 15,589,095(-) ATCGC(A/C/G/T)GGACA intron-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for CDRT1 Gene

Variant ID Type Subtype PubMed ID
nsv457695 CNV Gain 19166990

Variation tolerance for CDRT1 Gene

Residual Variation Intolerance Score: 98.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 14.69; 96.60% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CDRT1 Gene

HapMap Linkage Disequilibrium report
CDRT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CDRT1 Gene

Disorders for CDRT1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CDRT1 Gene - From: GeneCards

Disorder Aliases PubMed IDs
hereditary neuropathies
  • neuropathy - hereditary
- elite association - COSMIC cancer census association via MalaCards
Search CDRT1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CDRT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDRT1
genes like me logo Genes that share disorders with CDRT1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CDRT1 Gene

Publications for CDRT1 Gene

  1. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K. … Birren B. (Genome Res. 2001) 2 3 4 67
  2. Genomic structure and physical mapping of C17orf1: a gene associated with the proximal element of the CMT1A-REP binary repeat. (PMID: 9787083) Kennerson M.L. … Nicholson G.A. (Genomics 1998) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Systematic analysis and nomenclature of mammalian F-box proteins. (PMID: 15520277) Jin J. … Harper J.W. (Genes Dev. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for CDRT1 Gene

Sources for CDRT1 Gene

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