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Aliases for CDRT1 Gene

Aliases for CDRT1 Gene

  • CMT1A Duplicated Region Transcript 1 2 3
  • F-Box And WD Repeat Domain Containing 10 Pseudogene 1 2 3
  • F-Box And WD-40 Domain Protein 10 Pseudogene 1 2 3
  • C17ORF1A 3 4
  • C17ORF1 3 4
  • HREP 3 4
  • Charcot-Marie-Tooth Duplicated Region Transcript 1 3
  • CMT1A Duplicated Region Transcript 1 Protein 3
  • FBXW10P1 3
  • C170RF1 3
  • FBXW10B 3
  • SM25H2 3

External Ids for CDRT1 Gene

Previous HGNC Symbols for CDRT1 Gene

  • FBXW10P1

Previous GeneCards Identifiers for CDRT1 Gene

  • GC17U990245
  • GC17M015692
  • GC17M015432
  • GC17M015370
  • GC17M015476
  • GC17M015470

Summaries for CDRT1 Gene

Entrez Gene Summary for CDRT1 Gene

  • Members of the F-box protein family, such as FBXW10, are characterized by an approximately 40-amino acid F-box motif. SCF complexes, formed by SKP1 (MIM 601434), cullin (see CUL1; MIM 603034), and F-box proteins, act as protein-ubiquitin ligases. F-box proteins interact with SKP1 through the F box, and they interact with ubiquitination targets through other protein interaction domains (Jin et al., 2004 [PubMed 15520277]).[supplied by OMIM, Mar 2008]

GeneCards Summary for CDRT1 Gene

CDRT1 (CMT1A Duplicated Region Transcript 1) is a Protein Coding gene. An important paralog of this gene is FBXW10.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDRT1 Gene

Genomics for CDRT1 Gene

Regulatory Elements for CDRT1 Gene

Genomic Location for CDRT1 Gene

Start:
15,565,482 bp from pter
End:
15,619,704 bp from pter
Size:
54,223 bases
Orientation:
Minus strand

Genomic View for CDRT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDRT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDRT1 Gene

Proteins for CDRT1 Gene

  • Protein details for CDRT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95170-CDRT1_HUMAN
    Recommended name:
    CMT1A duplicated region transcript 1 protein
    Protein Accession:
    O95170
    Secondary Accessions:
    • O43848
    • O95611

    Protein attributes for CDRT1 Gene

    Size:
    752 amino acids
    Molecular mass:
    85370 Da
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • CDRT1 gene is located centromeric to and partially within proximal CMT1A-REP element. CMT1A-REP is a complex binary repeat element flanking a 1.5-Mb DNA region duplicated in Charcot-Marie-Tooth disease type I (CMT1A) or deleted in Hereditary neuropathy (HNPP)
    SequenceCaution:
    • Sequence=AAD10830.1; Type=Frameshift; Positions=165; Evidence={ECO:0000305};

    Alternative splice isoforms for CDRT1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CDRT1 Gene

Proteomics data for CDRT1 Gene at MOPED

Post-translational modifications for CDRT1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CDRT1 Gene

Domains for CDRT1 Gene

Gene Families for CDRT1 Gene

HGNC:
  • FBXW :F-boxes / WD-40 domains
  • WDR :WD repeat domain containing

Suggested Antigen Peptide Sequences for CDRT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95170

UniProtKB/Swiss-Prot:

CDRT1_HUMAN :
  • O95170
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with CDRT1: view

Function for CDRT1 Gene

Molecular function for CDRT1 Gene

GENATLAS Biochemistry:
cadherin-related tumor 1

Gene Ontology (GO) - Molecular Function for CDRT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CDRT1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CDRT1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CDRT1 Gene

Localization for CDRT1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CDRT1 Gene COMPARTMENTS Subcellular localization image for CDRT1 gene
Compartment Confidence
cytosol 3
nucleus 2
endoplasmic reticulum 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CDRT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with CDRT1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CDRT1 Gene

Pathways for CDRT1 Gene

SuperPathways for CDRT1 Gene

No Data Available

Interacting Proteins for CDRT1 Gene

Gene Ontology (GO) - Biological Process for CDRT1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with CDRT1: view

No data available for Pathways by source for CDRT1 Gene

Transcripts for CDRT1 Gene

mRNA/cDNA for CDRT1 Gene

Unigene Clusters for CDRT1 Gene

CMT1A duplicated region transcript 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CDRT1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDRT1 Gene

No ASD Table

Relevant External Links for CDRT1 Gene

GeneLoc Exon Structure for
CDRT1
ECgene alternative splicing isoforms for
CDRT1

Expression for CDRT1 Gene

mRNA expression in normal human tissues for CDRT1 Gene

mRNA differential expression in normal tissues according to GTEx for CDRT1 Gene

This gene is overexpressed in Esophagus - Mucosa (7.0) and Testis (6.6).

SOURCE GeneReport for Unigene cluster for CDRT1 Gene Hs.548021

mRNA Expression by UniProt/SwissProt for CDRT1 Gene

O95170-CDRT1_HUMAN
Tissue specificity: Expressed in pancreas, heart and skeletal muscle.
genes like me logo Genes that share expressions with CDRT1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Expression partners for CDRT1 Gene

Orthologs for CDRT1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CDRT1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDRT1 35
  • 99.07 (n)
  • 98.39 (a)
CDRT1 36
  • 96 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 35 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 31 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 23 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 27 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii fbxw10 36
  • 22 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes PRP46 36
  • 16 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2090 36
  • 6 (a)
OneToMany
Species with no ortholog for CDRT1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDRT1 Gene

ENSEMBL:
Gene Tree for CDRT1 (if available)
TreeFam:
Gene Tree for CDRT1 (if available)

Paralogs for CDRT1 Gene

Paralogs for CDRT1 Gene

Selected SIMAP similar genes for CDRT1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with CDRT1: view

Variants for CDRT1 Gene

Sequence variations from dbSNP and Humsavar for CDRT1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs6365 -- 15,589,496(-) GGAAC(A/C/G/T)CAGGA intron-variant
rs151439 -- 15,590,320(-) CCAGT(C/T)CCTCC intron-variant
rs151440 -- 15,590,155(-) GAGAC(A/G)GTGGC intron-variant
rs151442 -- 15,589,095(-) ATCGC(A/G)GGACA intron-variant, reference, synonymous-codon
rs151443 -- 15,588,796(-) ACACT(A/G)CCTAA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for CDRT1 Gene

Variant ID Type Subtype PubMed ID
nsv457695 CNV Gain 19166990

Relevant External Links for CDRT1 Gene

HapMap Linkage Disequilibrium report
CDRT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CDRT1 Gene

Disorders for CDRT1 Gene

No disorders were found for CDRT1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for CDRT1 Gene

Publications for CDRT1 Gene

  1. Genomic structure and physical mapping of C17orf1: a gene associated with the proximal element of the CMT1A-REP binary repeat. (PMID: 9787083) Kennerson M.L. … Nicholson G.A. (Genomics 1998) 2 3 4
  2. The 1.4-Mb CMT1A duplication/HNPP deletion genomic region reveals unique genome architectural features and provides insights into the recent evolution of new genes. (PMID: 11381029) Inoue K. … Birren B. (Genome Res. 2001) 2 3 4
  3. The Charcot-Marie-Tooth binary repeat contains a gene transcribed from the opposite strand of a partially duplicated region of the COX10 gene. (PMID: 9403059) Kennerson M.L. … Nicholson G.A. (Genomics 1997) 3 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for CDRT1 Gene

Sources for CDRT1 Gene

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