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Aliases for CDR1-AS Gene

Subcategory (RNA class) for CDR1-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDR1-AS Gene

  • CDR1 Antisense RNA 2 3 5
  • CDR1 Natural Antisense Transcript 2 3
  • Circular RNA Sponge For MiR-7 2 3
  • CDR1NAT 3
  • CDR1as 3
  • CiRS-7 3

External Ids for CDR1-AS Gene

Previous GeneCards Identifiers for CDR1-AS Gene

  • GC00U934304
  • GC0XU902169

Summaries for CDR1-AS Gene

Entrez Gene Summary for CDR1-AS Gene

  • This gene represents naturally-occurring RNAs transcribed in antisense to CDR1 (cerebellar degeneration-related protein 1, 34kDa; GeneID:1038), some of which may be circular rather than linear. Antisense circular RNAs bind microRNAs such as miR-7, acting as a sponge for these molecules and preventing them from interacting with target transcripts. The circular RNA produced by this locus is down-regulated by miR-671, which also decreases levels of the CDR1 transcript. No RefSeq transcript is created for the circular RNA. [provided by RefSeq, Jul 2014]

GeneCards Summary for CDR1-AS Gene

CDR1-AS (CDR1 Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDR1-AS Gene

Genomics for CDR1-AS Gene

Regulatory Elements for CDR1-AS Gene

Enhancers for CDR1-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG140763 0.7 ENCODE 0.4 -18.2 -18213 2.6 ZNF263 CTCF ZNF654 SP3 NFIB TRIM22 SP2 RAD21 ZFP69B POLR2A LINC00632 CDR1-AS GC0XP140723
GH0XG140762 0.8 ENCODE 0.3 -20.9 -20926 0.2 CTCF USF1 ZNF146 RAD21 ZNF366 EED SCRT2 ZSCAN5C ZNF143 SMC3 CDR1-AS GC0XP140723
GH0XG140740 0.3 FANTOM5 0.3 -42.7 -42714 0.2 GC0XP140723 CDR1-AS
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDR1-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for CDR1-AS Gene

Chromosome:
X
Start:
140,783,176 bp from pter
End:
140,784,660 bp from pter
Size:
1,485 bases
Orientation:
Plus strand

Genomic View for CDR1-AS Gene

Genes around CDR1-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDR1-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDR1-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for CDR1-AS Gene

Proteins for CDR1-AS Gene

Post-translational modifications for CDR1-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDR1-AS Gene

Domains & Families for CDR1-AS Gene

Gene Families for CDR1-AS Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CDR1-AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDR1-AS Gene

Function for CDR1-AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDR1-AS Gene

Localization for CDR1-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDR1-AS Gene

Pathways & Interactions for CDR1-AS Gene

SuperPathways for CDR1-AS Gene

No Data Available

Interacting Proteins for CDR1-AS Gene

Gene Ontology (GO) - Biological Process for CDR1-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDR1-AS Gene

Transcripts for CDR1-AS Gene

mRNA/cDNA for CDR1-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CDR1-AS Gene

No ASD Table

Relevant External Links for CDR1-AS Gene

GeneLoc Exon Structure for
CDR1-AS
ECgene alternative splicing isoforms for
CDR1-AS

Expression for CDR1-AS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDR1-AS Gene

Orthologs for CDR1-AS Gene

Evolution for CDR1-AS Gene

ENSEMBL:
Gene Tree for CDR1-AS (if available)
TreeFam:
Gene Tree for CDR1-AS (if available)

No data available for Orthologs for CDR1-AS Gene

Paralogs for CDR1-AS Gene

No data available for Paralogs for CDR1-AS Gene

Variants for CDR1-AS Gene

Relevant External Links for CDR1-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDR1-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDR1-AS Gene

Disorders for CDR1-AS Gene

Relevant External Links for CDR1-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDR1-AS

No disorders were found for CDR1-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDR1-AS Gene

Publications for CDR1-AS Gene

  1. Circular RNAs are a large class of animal RNAs with regulatory potency. (PMID: 23446348) Memczak S. … Rajewsky N. (Nature 2013) 2 3 64
  2. Natural RNA circles function as efficient microRNA sponges. (PMID: 23446346) Hansen T.B. … Kjems J. (Nature 2013) 2 3 64
  3. miRNA-dependent gene silencing involving Ago2-mediated cleavage of a circular antisense RNA. (PMID: 21964070) Hansen T.B. … Kjems J. (EMBO J. 2011) 2 3 64
  4. The circular RNA ciRS-7 (Cdr1as) acts as a risk factor of hepatic microvascular invasion in hepatocellular carcinoma. (PMID: 27614453) Xu L. … Xu M. (J. Cancer Res. Clin. Oncol. 2017) 3 64
  5. The emerging landscape of circular RNA ciRS-7 in cancer (Review). (PMID: 25873049) Peng L. … Li G.C. (Oncol. Rep. 2015) 3 64

Products for CDR1-AS Gene

Sources for CDR1-AS Gene

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