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Aliases for CDPF1 Gene

Aliases for CDPF1 Gene

  • Cysteine Rich DPF Motif Domain Containing 1 2 3 5
  • C22orf40 3 4
  • Cysteine-Rich DPF Motif Domain-Containing Protein 1 3
  • Cysteine-Rich, DPF Motif Domain Containing 1 2
  • Cysteine Rich, DPF Motif Domain Containing 1 2
  • Chromosome 22 Open Reading Frame 40 2
  • UPF0595 Protein C22orf40 3

External Ids for CDPF1 Gene

Previous HGNC Symbols for CDPF1 Gene

  • C22orf40

Previous GeneCards Identifiers for CDPF1 Gene

  • GC22M046641

Summaries for CDPF1 Gene

GeneCards Summary for CDPF1 Gene

CDPF1 (Cysteine Rich DPF Motif Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDPF1 Gene

Genomics for CDPF1 Gene

Regulatory Elements for CDPF1 Gene

Enhancers for CDPF1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G046049 2.1 FANTOM5 Ensembl ENCODE dbSUPER 44.6 +177.9 177939 45.7 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YBX1 YY1 ZNF263 SP3 TBX21 CDPF1 LOC642648 LINC00899 TRMU ENSG00000273287 TTC38 NUP50 PRR34 NUP50-AS1 MIR3619
GH22G045583 1.6 Ensembl ENCODE dbSUPER 57.6 +666.7 666674 1.3 HDGF SIN3A ZNF2 ZNF302 ZNF143 ZNF207 SP3 ZNF610 GLIS1 WT1 CDPF1 TRMU LINC00899 LOC642648 ENSG00000273243 ENSG00000273287 ENSG00000273145 LINC01589 PIR61892 GC22M045550
GH22G046760 1.6 Ensembl ENCODE dbSUPER 49.8 -512.4 -512365 4.7 HDGF PKNOX1 FOXA2 MLX CREB3L1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ENSG00000260708 CDPF1 TBC1D22A TRMU LINC00899 LOC642648 GC22P046799 GC22P046798 GC22P046797 GC22P046796
GH22G046612 1.5 Ensembl ENCODE dbSUPER 48.9 -362.9 -362937 3.2 HDGF PKNOX1 ATF1 ARNT ZNF493 ARID4B YBX1 TCF12 ZNF207 YY2 CDPF1 LOC642648 TRMU GRAMD4 LINC00899 GC22M046648
GH22G045289 1.5 Ensembl ENCODE dbSUPER 47.7 +959.8 959829 2.0 HDGF PKNOX1 WRNIP1 ZNF133 GLI4 ZNF2 ZNF121 GLIS2 ZNF302 ZNF416 CDPF1 LINC00899 LOC642648 FAM118A ENSG00000273243 ENSG00000273145 TTC38 UPK3A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDPF1 on UCSC Golden Path with GeneCards custom track

Promoters for CDPF1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000147354 479 1601 PKNOX1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF263

Genomic Location for CDPF1 Gene

Chromosome:
22
Start:
46,244,011 bp from pter
End:
46,250,679 bp from pter
Size:
6,669 bases
Orientation:
Minus strand

Genomic View for CDPF1 Gene

Genes around CDPF1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDPF1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDPF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDPF1 Gene

Proteins for CDPF1 Gene

  • Protein details for CDPF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV7-CDPF1_HUMAN
    Recommended name:
    Cysteine-rich DPF motif domain-containing protein 1
    Protein Accession:
    Q6NVV7
    Secondary Accessions:
    • A6NCA1
    • A9IU12
    • A9IU16
    • Q3ZCR8

    Protein attributes for CDPF1 Gene

    Size:
    123 amino acids
    Molecular mass:
    13877 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDPF1 Gene

Post-translational modifications for CDPF1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for CDPF1 Gene

Domains & Families for CDPF1 Gene

Protein Domains for CDPF1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CDPF1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6NVV7

UniProtKB/Swiss-Prot:

CDPF1_HUMAN :
  • Belongs to the CDPF1 family.
Family:
  • Belongs to the CDPF1 family.
genes like me logo Genes that share domains with CDPF1: view

No data available for Gene Families for CDPF1 Gene

Function for CDPF1 Gene

Gene Ontology (GO) - Molecular Function for CDPF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CDPF1: view
genes like me logo Genes that share phenotypes with CDPF1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDPF1 Gene

Localization for CDPF1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CDPF1 gene
Compartment Confidence
cytosol 3
extracellular 2
mitochondrion 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for CDPF1 Gene

Pathways & Interactions for CDPF1 Gene

SuperPathways for CDPF1 Gene

No Data Available

Interacting Proteins for CDPF1 Gene

Gene Ontology (GO) - Biological Process for CDPF1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDPF1 Gene

Transcripts for CDPF1 Gene

Unigene Clusters for CDPF1 Gene

Cysteine-rich, DPF motif domain containing 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDPF1 Gene

No ASD Table

Relevant External Links for CDPF1 Gene

GeneLoc Exon Structure for
CDPF1
ECgene alternative splicing isoforms for
CDPF1

Expression for CDPF1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDPF1 Gene

Protein differential expression in normal tissues from HIPED for CDPF1 Gene

This gene is overexpressed in Breast (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CDPF1 Gene



Protein tissue co-expression partners for CDPF1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CDPF1 Gene:

CDPF1

SOURCE GeneReport for Unigene cluster for CDPF1 Gene:

Hs.592209
genes like me logo Genes that share expression patterns with CDPF1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDPF1 Gene

Orthologs for CDPF1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CDPF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDPF1 34 35
  • 99.46 (n)
dog
(Canis familiaris)
Mammalia CDPF1 34 35
  • 84.55 (n)
cow
(Bos Taurus)
Mammalia CDPF1 34 35
  • 80.99 (n)
mouse
(Mus musculus)
Mammalia Cdpf1 34 16 35
  • 78.15 (n)
oppossum
(Monodelphis domestica)
Mammalia CDPF1 35
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CDPF1 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1H22ORF40 34 35
  • 66.94 (n)
lizard
(Anolis carolinensis)
Reptilia CDPF1 35
  • 45 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cdpf1 34
  • 68.21 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.1582 34
zebrafish
(Danio rerio)
Actinopterygii si:ch211-239e6.4 34
  • 63.13 (n)
CDPF1 35
  • 51 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG11755 35
  • 24 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 31 (a)
OneToOne
Species where no ortholog for CDPF1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDPF1 Gene

ENSEMBL:
Gene Tree for CDPF1 (if available)
TreeFam:
Gene Tree for CDPF1 (if available)

Paralogs for CDPF1 Gene

Pseudogenes.org Pseudogenes for CDPF1 Gene

genes like me logo Genes that share paralogs with CDPF1: view

No data available for Paralogs for CDPF1 Gene

Variants for CDPF1 Gene

Sequence variations from dbSNP and Humsavar for CDPF1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000444257 -- 46,245,824(+) TGTGA(C/G/T)TCAGG intron-variant
rs1000732227 -- 46,245,595(+) AGCAC(A/G)AACAG intron-variant
rs1000757257 -- 46,251,183(+) ATGCT(A/G)TTGCG upstream-variant-2KB
rs1000889451 -- 46,250,058(+) GGGGG(G/T)ACAGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000941102 -- 46,249,757(+) TGAGC(A/C/G)GGGGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CDPF1 Gene

Variant ID Type Subtype PubMed ID
dgv2469n106 OTHER inversion 24896259
esv3647950 CNV loss 21293372
nsv1152661 OTHER inversion 26484159
nsv829281 CNV gain 20364138
nsv829293 CNV gain 20364138
nsv834224 CNV loss 17160897

Variation tolerance for CDPF1 Gene

Residual Variation Intolerance Score: 60.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.84; 83.55% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CDPF1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDPF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CDPF1 Gene

Disorders for CDPF1 Gene

Relevant External Links for CDPF1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDPF1

No disorders were found for CDPF1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDPF1 Gene

Publications for CDPF1 Gene

  1. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  4. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for CDPF1 Gene

Sources for CDPF1 Gene

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