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Aliases for CDPF1 Gene

Aliases for CDPF1 Gene

  • Cysteine-Rich, DPF Motif Domain Containing 1 2 3
  • C22orf40 3 4
  • Cysteine-Rich DPF Motif Domain-Containing Protein 1 3
  • Chromosome 22 Open Reading Frame 40 2
  • UPF0595 Protein C22orf40 3

External Ids for CDPF1 Gene

Previous HGNC Symbols for CDPF1 Gene

  • C22orf40

Previous GeneCards Identifiers for CDPF1 Gene

  • GC22M046641

Summaries for CDPF1 Gene

GeneCards Summary for CDPF1 Gene

CDPF1 (Cysteine-Rich, DPF Motif Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDPF1 Gene

Genomics for CDPF1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for CDPF1 Gene

Start:
46,244,011 bp from pter
End:
46,250,679 bp from pter
Size:
6,669 bases
Orientation:
Minus strand

Genomic View for CDPF1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDPF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDPF1 Gene

No data available for Regulatory Elements for CDPF1 Gene

Proteins for CDPF1 Gene

  • Protein details for CDPF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6NVV7-CDPF1_HUMAN
    Recommended name:
    Cysteine-rich DPF motif domain-containing protein 1
    Protein Accession:
    Q6NVV7
    Secondary Accessions:
    • A6NCA1
    • A9IU12
    • A9IU16
    • Q3ZCR8

    Protein attributes for CDPF1 Gene

    Size:
    123 amino acids
    Molecular mass:
    13877 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDPF1 Gene

Proteomics data for CDPF1 Gene at MOPED

Post-translational modifications for CDPF1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CDPF1 Gene

No data available for DME Specific Peptides for CDPF1 Gene

Domains for CDPF1 Gene

Protein Domains for CDPF1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6NVV7

UniProtKB/Swiss-Prot:

CDPF1_HUMAN :
  • Q6NVV7
Family:
  • Belongs to the CDPF1 family.
genes like me logo Genes that share domains with CDPF1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for CDPF1 Gene

Function for CDPF1 Gene

Gene Ontology (GO) - Molecular Function for CDPF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with CDPF1: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CDPF1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CDPF1 Gene

Localization for CDPF1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDPF1 Gene

Pathways for CDPF1 Gene

SuperPathways for CDPF1 Gene

No Data Available

Interacting Proteins for CDPF1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000325301%0d%0a9606.ENSP00000256495%0d%0a
Selected Interacting proteins: ENSP00000325301 Q6NVV7-CDPF1_HUMAN for CDPF1 Gene via STRING UniProtKB

Gene Ontology (GO) - Biological Process for CDPF1 Gene

None

No data available for Pathways by source for CDPF1 Gene

Transcripts for CDPF1 Gene

Unigene Clusters for CDPF1 Gene

Cysteine-rich, DPF motif domain containing 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for CDPF1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDPF1 Gene

No ASD Table

Relevant External Links for CDPF1 Gene

GeneLoc Exon Structure for
CDPF1
ECgene alternative splicing isoforms for
CDPF1

Expression for CDPF1 Gene

mRNA expression in normal human tissues for CDPF1 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CDPF1 Gene

SOURCE GeneReport for Unigene cluster for CDPF1 Gene Hs.592209

genes like me logo Genes that share expressions with CDPF1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CDPF1 Gene

Orthologs for CDPF1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CDPF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDPF1 35
  • 99.46 (n)
  • 98.37 (a)
CDPF1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CDPF1 35
  • 80.99 (n)
  • 72.73 (a)
CDPF1 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CDPF1 35
  • 84.55 (n)
  • 83.74 (a)
CDPF1 36
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cdpf1 35
  • 78.15 (n)
  • 75.63 (a)
Cdpf1 16
Cdpf1 36
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CDPF1 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CDPF1 36
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves C1H22ORF40 35
  • 66.94 (n)
  • 66.67 (a)
C1H22ORF40 36
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CDPF1 36
  • 45 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.1582 35
tropical clawed frog
(Silurana tropicalis)
Amphibia cdpf1 35
  • 68.21 (n)
  • 66.67 (a)
zebrafish
(Danio rerio)
Actinopterygii CDPF1 36
  • 51 (a)
OneToOne
si:ch211-239e6.4 35
  • 63.13 (n)
  • 55.75 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG11755 36
  • 24 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 31 (a)
OneToOne
Species with no ortholog for CDPF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDPF1 Gene

ENSEMBL:
Gene Tree for CDPF1 (if available)
TreeFam:
Gene Tree for CDPF1 (if available)

Paralogs for CDPF1 Gene

Pseudogenes.org Pseudogenes for CDPF1 Gene

genes like me logo Genes that share paralogs with CDPF1: view

No data available for Paralogs for CDPF1 Gene

Variants for CDPF1 Gene

Sequence variations from dbSNP and Humsavar for CDPF1 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs135024 -- 46,249,957(-) CAGGC(A/G)CCGCC intron-variant
rs1053332 -- 46,244,282(-) ACTGC(C/T)TGCCT utr-variant-3-prime
rs1807600 -- 46,248,743(-) gcgcc(C/T)ggccA intron-variant
rs3087501 -- 46,252,012(+) gatca(A/G)ggtgt upstream-variant-2KB
rs5767842 -- 46,244,930(+) TGTGG(C/T)TGCTC utr-variant-3-prime

Relevant External Links for CDPF1 Gene

HapMap Linkage Disequilibrium report
CDPF1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CDPF1 Gene

Disorders for CDPF1 Gene

No disorders were found for CDPF1 Gene.

No data available for UniProtKB/Swiss-Prot for CDPF1 Gene

Publications for CDPF1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. A genome annotation-driven approach to cloning the human ORFeome. (PMID: 15461802) Collins J.E. … Dunham I. (Genome Biol. 2004) 3
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 4

Products for CDPF1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate CDPF1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CDPF1
    • Block miRNA regulation of CDPF1 using miScript Target Protectors

    Sources for CDPF1 Gene

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