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Aliases & Descriptions for CDKN2D
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases INK4D 1 , 2 p19 1 , 2 p19-INK4D 2 p19-INK4d 3
Descriptions CDK inhibitor p19INK4d 2 cell cycle inhibitor, Nur77 associating protein 2 cyclin-dependent kinase 4 inhibitor D p19 2 cyclin-dependent kinase inhibitor 2D 2 cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 2 inhibitor of cyclin-dependent kinase 4d 2
Search outside databases for aliases for CDKN2D genePrevious GC identifers: GC19M010808 GC19M010899 GC19M010522
Summaries for CDKN2D (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CDKN2D : The protein encoded by this gene is a member of the INK4 family of cyclin-dependent kinaseinhibitors. This protein has been shown to form a stable complex with CDK4 or CDK6, and preventthe activation of the CDK kinases, thus function as a cell growth regulator that controls cellcycle G1 progression. The abundance of the transcript of this gene was found to oscillate in acell-cycle dependent manner with the lowest expression at mid G1 and a maximal expression during Sphase. The negative regulation of the cell cycle involved in this protein was shown to participatein repressing neuronal proliferation, as well as spermatogenesis. Two alternatively splicedvariants of this gene, which encode an identical protein, have been reported. [provided by RefSeq] UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273 Function : Interacts strongly with CDK4 and CDK6 and inhibits them
Gene Wiki entry for CDKN2D
Genomic Location for CDKN2D
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CDKN2D gene Entrez Gene cytogenetic band: 19p13 Ensembl cytogenetic band: 19p13.2 HGNC cytogenetic band: 19p13 CDKN2D Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M010538:
(about GC identifiers )
Start:
10,538,138 bp from pter
End:
10,540,655 bp from pter
Size:
2,518 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000019.8 NT_011295.10 Proteins for CDKN2D
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273 (See
protein sequence )Recommended Name: Cyclin-dependent kinase 4 inhibitor D Size : 166 amino acids; 17700 Da
PDB structure from and Proteopedia : 1BD8 (3D)
 1BI8 (3D)
 
Secondary accessions : Q13102 Q6FGE9
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001791.1 NP_524145.1 ENSEMBL proteins: ENSP00000337056 ENSP00000377224 Human Recombinant Proteins                OriGene Purified Recombinant Human Proteins (see all 2 ): CDKN2D 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CDKN2D: Assays for CDKN2D:
Protein
Domains/ Families for CDKN2D(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P55273 ProtoNet protein and cluster: P55273
UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273 Similarity : Belongs to the CDKN2 cyclin-dependent kinase inhibitor familySimilarity : Contains 4 ANK repeats
Gene Function for CDKN2D
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
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Clones , and
Q-PCR Products
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Millipore ,
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siRNAs from
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_079421 Applied Biosystems Silencer ® siRNAs for CDKN2D Sigma-Aldrich siRNA and siRNA Panels for CDKN2D Sigma-Aldrich shRNA Panels and shRNA for CDKN2D Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001800                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001800                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001800  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001800 UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273 Function : Interacts strongly with CDK4 and CDK6 and inhibits them
Genatlas biochemistry entry for CDKN2D :cyclin dependent kinase 4 and 6 (CDK4/CDK6) inhibitor,p19,regulator of the cell cycle,passagethrough the G1 checkpoint,expressed primarily in hematopoietic tissues
13 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Cdkn2d) :2 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CDKN2D
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for CDKN2D (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CDKN2D 5/28 Interacting proteins for CDKN2D (P55273 2 ENSP00000337056 3 ) via UniProtKB, MINT, and/or STRING (see all 28
)About this table 5/14 Gene Ontology (GO) biological process terms (links to tree view) (see all 14
):
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Drugs & Compounds for CDKN2D (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for CDKN2D:Inhibitor
Browse Tocris compounds for CDKN2D
Transcripts for CDKN2D(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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siRNAs from Applied Biosystems ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_079421 Sigma-Aldrich siRNA and siRNA Panels for CDKN2D Sigma-Aldrich shRNA Panels and shRNA for CDKN2D Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001800 NM_079421
REFSEQ mRNAs for CDKN2D gene (2 alternative transcripts): NM_001800.3 NM_079421.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001800 NM_079421
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001800                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001800                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001800  
Additional cDNA sequence: BC001822.2 CR542158.1 CR614055.1 U20498.1 U40343.1 U49399.1
2 DOTS entries : DT.95103286 DT.100749508
24/126 AceView cDNA sequences (see all 126
):BC001822 BM272734 CA424868 CK824084 NM_079421 CR614055 BF902747 BF901939 BI028054 AA488276 BF902750 BU542469 BM142409 BE504281 BI031174 AI824257 BU689358 NM_001800 BF901942 AI383407 BQ881787 AI421483 BM894022 BI030509
highest scoring ESTs for CDKN2D :BC001822 BE299378 BF203925 BG719545 BI462387 BI523657 BI669755 BI818887 BM505097 BM563048
Unigene Cluster for CDKN2D: Cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) Hs.435051 [show with all ESTs ] Unigene Representative Sequence: NM_001800 GeneLoc Exon Structure 2 Ensembl transcripts including schematic representations : ENST00000335766
ENST00000393599
Expression for CDKN2D
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CDKN2D expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CDKN2D 1 / 2 / 3
3 probe-sets matching CDKN2D gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: ATCAAAAAAASOURCE GeneReport for Unigene cluster: Hs.435051 Expression variation in blood from EXPOLDB for CDKN2D
Orthologs for CDKN2D
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CDKN2D gene from 4 species
About this table Species with no ortholog for CDKN2D ENSEMBL Gene Tree for CDKN2D Paralogs for CDKN2D (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CDKN2D gene CDKN2C 2 CDKN2B 2
SNPs/Variants for CDKN2D (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CDKN2D (up to first 250kb)
Disorders & Mutations for CDKN2D
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600927 5 Novoseek disease relationships for CDKN2D gene
About this table Human Genome Epidemiology Navigator: CDKN2D (8 documents) Tumor Gene Database : CDKN2D
Medical News for CDKN2D (Possibly Related Articles in
Doctor's Guide )
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--
Publications for CDKN2D (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/62 PubMed articles for CDKN2D gene (see all 62
): Molecular cloning, expression pattern, and chromosomal localization of human CDKN2D/INK4d, an inhibitor of cyclin D-dependent kinases. (PubMed id 8575754) 1, 2, 3, 4 Okuda T.... Downing J.R. (1995) Isolation and characterization of p19INK4d, a p16-related inhibitor specific to CDK6 and CDK4. (PubMed id 8741839) 1, 3, 4 Guan K.L.... Xiong Y. (1996) Mutation testing in melanoma families: INK4A, CDK4 and INK4D. (PubMed id 10390011) 1, 3, 4 Newton Bishop J.A....Bishop D.T. (1999) Structure of human cyclin-dependent kinase inhibitor p19(INK4d): comparison to known ankyrin-repeat-containing structures and implications for the dysfunction of tumor suppressor p16(INK4a). (PubMed id 9782052) 1, 3, 4 Baumgartner R....Holak T.A. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides. (PubMed id 12665801) 3, 4 Gevaert K.... Vandekerckhove J. (2003) Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16INK4a. (PubMed id 9751050) 3, 4 Russo A.A.... Pavletich N.P. (1998) Identification of human and mouse p19, a novel CDK4 and CDK6 inhibitor with homology to p16ink4. (PubMed id 7739548) 3, 4 Chan F.K.M.... Winoto A. (1995) Lack of p19INK4d in human testicular germ-cell tumours contrasts with high expression during normal spermatogenesis. (PubMed id 10962575) 1, 3 Bartkova J....Bartek J. (2000) Histone deacetylase inhibitors activate INK4d gene through Sp1 site in its promoter. (PubMed id 15107822) 1, 3 Yokota T....Sakai T. (2004)
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Genome Databases showing CDKN2D
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CDKN2D
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Specialized Databases showing CDKN2D (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CDKN2D (Reagents available from Applied Biosystems , Antibodies and assays by Cell
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