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CDKN2D Gene

protein-coding   GIFtS: 63

GC19M010538
cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases
INK4D 1, 2
p19 1, 2
p19-INK4D 2
p19-INK4d 3
Descriptions
CDK inhibitor p19INK4d 2
cell cycle inhibitor, Nur77 associating protein 2
cyclin-dependent kinase 4 inhibitor D p19 2
cyclin-dependent kinase inhibitor 2D 2
cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4) 2
inhibitor of cyclin-dependent kinase 4d 2
External Ids
HGNC: 17901
Entrez Gene: 10322
UniProtKB: P552733
Ensembl: ENSG000001293557
Search outside databases for aliases for CDKN2D gene

Previous GC identifers: GC19M010808 GC19M010899 GC19M010522

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for CDKN2D:
The protein encoded by this gene is a member of the INK4 family of cyclin-dependent kinase
inhibitors. This protein has been shown to form a stable complex with CDK4 or CDK6, and prevent
the activation of the CDK kinases, thus function as a cell growth regulator that controls cell
cycle G1 progression. The abundance of the transcript of this gene was found to oscillate in a
cell-cycle dependent manner with the lowest expression at mid G1 and a maximal expression during S
phase. The negative regulation of the cell cycle involved in this protein was shown to participate
in repressing neuronal proliferation, as well as spermatogenesis. Two alternatively spliced
variants of this gene, which encode an identical protein, have been reported. [provided by RefSeq]

UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273
Function: Interacts strongly with CDK4 and CDK6 and inhibits them

Gene Wiki entry for CDKN2D

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the CDKN2D gene  

Entrez Gene cytogenetic band: 19p13   Ensembl cytogenetic band:  19p13.2   HGNC cytogenetic band: 19p13

CDKN2D Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M010538:     (about GC identifiers)

Start:
10,538,138 bp from pter
End:
10,540,655 bp from pter
Size:
2,518 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000019.8  NT_011295.10  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273 (See protein sequence)
Recommended Name: Cyclin-dependent kinase 4 inhibitor D  
Size: 166 amino acids; 17700 Da
PDB structure from and Proteopedia :
1BD8 (3D)    1BI8 (3D)    
Secondary accessions: Q13102 Q6FGE9

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_001791.1  NP_524145.1  


    ENSEMBL proteins: 
    ENSP00000337056 ENSP00000377224 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (p19 INK4d)
    Human Recombinant Proteins from Abnova (CDKN2D)
                   OriGene Purified Recombinant Human Proteins (see all 2): CDKN2D  

    2 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IDA8741839 15750620
    GO:0005737 cytoplasm IDA15750620
    About this table

    Antibodies for CDKN2D: 
    Invitrogen Antibodies for CDKN2D
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    Monoclonal and Polyclonal Antibodies from Abnova (CDKN2D)
    Novus Biologicals Antibodies for CDKN2D

    Assays for CDKN2D: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    1 InterPro domain/family:
     IPR002110 ANK


       GeneDecks  CDKN2D for the domains selected above  
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    Graphical View of Domain Structure for InterPro Entry P55273

    ProtoNet protein and cluster: P55273

    UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273
    Similarity: Belongs to the CDKN2 cyclin-dependent kinase inhibitor family
    Similarity: Contains 4 ANK repeats

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CDKN2D)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (CDKN2D)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_079421

                  Applied Biosystems Silencer® siRNAs for CDKN2D

                  Sigma-Aldrich siRNA and siRNA Panels for CDKN2D  
                         Sigma-Aldrich shRNA Panels and shRNA for CDKN2D  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for CDKN2D
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001800
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001800
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_001800 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_001800

    UniProtKB/Swiss-Prot: CDN2D_HUMAN, P55273
    Function: Interacts strongly with CDK4 and CDK6 and inhibits them

    Genatlas biochemistry entry for CDKN2D:
    cyclin dependent kinase 4 and 6 (CDK4/CDK6) inhibitor,p19,regulator of the cell cycle,passage
    through the G1 checkpoint,expressed primarily in hematopoietic tissues

    13 MGI mutant phenotypes (inferred from 1 allele(MGI details for Cdkn2d):

    behavior/neurologicalcellularendocrine/exocrine glandgrowth/sizehearing/vestibular/ear
    homeostasis/metabolismlethality-postnatalmusclenervous systemreproductive system
    respiratory systemtumorigenesisvision/eye

    2 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004861 cyclin-dependent protein kinase inhibitor activity IDA8741839
    GO:0019901 protein kinase binding IPI8741839
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for CDKN2D (Maps provided by GeneGo):
     Regulation of G1-S transition

       GeneDecks  CDKN2D for the pathways selected above  
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    1 Millipore Pathway for CDKN2D
     Immune response IL-10 signaling pathway

       GeneDecks  CDKN2D for the pathways selected above  
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    2 Sigma-Aldrich "Your Favorite Gene" Pathways for  CDKN2D  (Your Favorite Gene powered by Ingenuity) 
     Molecular Mechanisms of Cancer
     Glioma Signaling

       GeneDecks  CDKN2D for the pathways selected above  
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    1 Cell Signaling Technology (CST) Pathway for CDKN2D: 
     Cell Cycle Control: G1/S Checkpoint

       GeneDecks  CDKN2D for the pathways selected above  
    About GeneDecksing

    1 Kegg Pathway  (Kegg details for CDKN2D):
     hsa04110 Cell cycle

       GeneDecks  CDKN2D for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  CDKN2D 


    5/28 Interacting proteins for CDKN2D (P552732 ENSP000003370563) via UniProtKB, MINT, and/or STRING (see all 28 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    TBC1D17Q9HA652MINT-67668
    CDK6ENSP000002657343STRING (score=.999)
    CDK4ENSP000002579043STRING (score=.998)
    CCND1ENSP000002275073STRING (score=.989)
    CDKN2AENSP000003551533STRING (score=.986)
    About this table

    5/14 Gene Ontology (GO) biological process terms (links to tree view) (see all 14 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000079 regulation of cyclin-dependent protein kinase activity IDA8741839
    GO:0000082 G1/S transition of mitotic cell cycle IDA10208428
    GO:0000731 DNA synthesis during DNA repair IMP15750620
    GO:0006916 anti-apoptosis IMP15750620
    GO:0007050 cell cycle arrest IDA10208428
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Sigma-Aldrich Small Molecules for CDKN2D:
    Inhibitor

    Browse Tocris compounds for CDKN2D

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (CDKN2D)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (CDKN2D)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_079421

                  Sigma-Aldrich siRNA and siRNA Panels for CDKN2D  
                         Sigma-Aldrich shRNA Panels and shRNA for CDKN2D  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_001800  NM_079421  

    REFSEQ mRNAs for CDKN2D gene (2 alternative transcripts): 

    NM_001800.3   NM_079421.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_001800  NM_079421  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_001800
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_001800
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_001800 

    Additional cDNA sequence: 

    BC001822.2 CR542158.1 CR614055.1 U20498.1 U40343.1 U49399.1 

    2 DOTS entries:

    DT.95103286  DT.100749508 

    24/126 AceView cDNA sequences (see all 126 ):

    BC001822 BM272734 CA424868 CK824084 NM_079421 CR614055 BF902747 BF901939 
    BI028054 AA488276 BF902750 BU542469 BM142409 BE504281 BI031174 AI824257 
    BU689358 NM_001800 BF901942 AI383407 BQ881787 AI421483 BM894022 BI030509 

    highest scoring ESTs for CDKN2D:

    BC001822 BE299378 BF203925 BG719545 BI462387 BI523657 BI669755 BI818887 BM505097 BM563048 

    Unigene Cluster for CDKN2D:

    Cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)
    Hs.435051  [show with all ESTs]
    Unigene Representative Sequence: NM_001800


    GeneLoc Exon Structure

    2 Ensembl transcripts including schematic representations:
    ENST00000335766  ENST00000393599  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    CDKN2D expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for CDKN2D

    1 / 2 / 3

    3 probe-sets matching CDKN2D gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    1797_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 U40343 0.80 1.00 0.91 1

    210240_s_at2, 3 U133-A 1 1.00 1.00 -- -- U20498 0.60 1.00 0.82 1

    210240_s_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  CDKN2D for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: ATCAAAAAAA

    SOURCE GeneReport for Unigene cluster: Hs.435051

    Expression variation in blood from EXPOLDB for CDKN2D

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for CDKN2D gene from 4 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    CDKN2D1   -- cyclin-dependent kinase inhibitor 2D (p19, inhibits more 87.55(n)
    89.76(a)
    611216  XM_848853.1  XP_853946.1 
    chimpanzee
    (Pan troglodytes)
    CDKN2D1   -- cyclin-dependent kinase inhibitor 2D (p19, inhibits more 99.6(n)
    100(a)
    745942  XM_001165514.1  XP_001165514.1 
    cow
    (Bos taurus)
    CDKN2D1   -- cyclin-dependent kinase inhibitor 2D (p19, inhibits more 85.34(n)
    87.95(a)
    510244  NM_001046050.1  NP_001039515.1 
    mouse
    (Mus musculus)
    Cdkn2d1, 5 95
    cyclin-dependent kinase inhibitor 2D (p19, inhibits more1, 5 81.73(n)1
    86.75(a)1
    125811  NM_009878.21  NP_034008.21 
     AK1329065  AK1408085  (see all 10)
    About this table        Species with no ortholog for CDKN2D

    ENSEMBL Gene Tree for CDKN2D
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for CDKN2D gene
    CDKN2C2  CDKN2B2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/18 NCBI SNPs in CDKN2D are shown (see all 18 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 34)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 19 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs176773161,2
    C,F,H10541241(+) AAAGGG/AAAACG 2 -- ng31 trp312Minor allele frequency- A:0.14NA EU EA WA 1048
    rs8920821,2
    A,F,H10541478(-) AACTAT/CTGTCT 2 -- ng31 tfbs34Minor allele frequency- C:0.39EU EA WA 414
    rs48045091,2
    C,F,H10542641(+) GTGCAA/GATCAA 1 -- ng31 tfbs34Minor allele frequency- G:0.42EU EA WA 402
    rs37606481,2
    C,F,H10541103(-) GCCAAT/CGAATG 2 -- ng314Minor allele frequency- C:0.39EU EA WA 418
    --
    rs14657001,2
    A10541621(-) CTACTC/TGGGAG 2 -- ng310--------
    --
    rs8920811,2
    A10541684(-) GAAACA/CTCATA 2 -- ng310--------
    rs19684451,2
    C10540240(-) CACCGC/GGAGCT 2 R/R syn1 ese30--------
    rs14657011,2
    A,C,F,H10539842(-) CTTCTG/ATGGGG 2 -- int112Minor allele frequency- A:0.40MN EU EA WA NS 1432
    --
    rs345114671,2
    --10541896(+) TTTTAC/GAGTGG 2 -- ng310--------
    --
    rs8920801,2
    --10541734(-) AAAGCA/CAAACA 2 -- ng310--------
    About this table

    HapMap Linkage Disequilibrium images for CDKN2D (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 600927

    5 Novoseek disease relationships for CDKN2D gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    retinoblastoma 51.18 3 10962575 (1), 15172750 (1), 15738662 (1)
    leukemia t-cell 39.60 1 15107822 (1)
    cancer 25.83 4 10962575 (1), 18507837 (1)
    osteosarcoma 23.58 2 9244358 (2)
    tumors 18.39 5 9111168 (1), 11301189 (1), 15738662 (1), 9244358 (1)
    About this table

    Human Genome Epidemiology Navigator: CDKN2D (8 documents)
    Tumor Gene Database: CDKN2D

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/62 PubMed articles for CDKN2D gene (see all 62 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1032 HGNC: 1790 AceView: CDKN2D Ensembl:ENSG00000129355 euGenes: HUgn1032
    ECgene: CDKN2D H-InvDB: CDKN2D
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for CDKN2D Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/cdkn2d/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for CDKN2D:
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     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Recombinant Proteins
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     shRNA in GFP-retroviral vector
     Search Tocris compounds for CDKN2D




     Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies
     Antibodies for CDKN2D

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