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Aliases & Descriptions for CDKN2C
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CDKN6 3 INK4C 1 , 2 , 5 OTTHUMP00000009730 2 OTTHUMP00000009731 2 OTTHUMP00000046546 2 p18 2 p18-INK4C 2 p18-INK4c 3 p18-INK6 3
Descriptions CDK6 inhibitor p18 2 Cyclin-dependent kinase 6 inhibitor 3 cyclin-dependent inhibitor 2 cyclin-dependent kinase 4 inhibitor C 2 cyclin-dependent kinase 6 inhibitor p18 2 cyclin-dependent kinase inhibitor 2C 2 cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) 2
Search outside databases for aliases for CDKN2C genePrevious GC identifers: GC01P051060 GC01P050315 GC01P050784 GC01P050796
Summaries for CDKN2C (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CDKN2C : The protein encoded by this gene is a member of the INK4 family of cyclin-dependent kinaseinhibitors. This protein has been shown to interact with CDK4 or CDK6, and prevent the activationof the CDK kinases, thus function as a cell growth regulator that controls cell cycle G1progression. Ectopic expression of this gene was shown to suppress the growth of human cells in amanner that appears to correlate with the presence of a wild-type RB1 function. Studies in theknockout mice suggested the roles of this gene in regulating spermatogenesis, as well as insuppressing tumorigenesis. Two alternatively spliced transcript variants of this gene, whichencode an identical protein, have been reported. [provided by RefSeq] UniProtKB/Swiss-Prot: CDN2C_HUMAN, P42773 Function : Interacts strongly with CDK6, weakly with CDK4. Inhibits cell growth and proliferationwith a correlated dependence on endogenous retinoblastoma protein RB
Gene Wiki entry for CDKN2C
Genomic Location for CDKN2C
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CDKN2C gene Entrez Gene cytogenetic band: 1p32 Ensembl cytogenetic band: 1p33 HGNC cytogenetic band: 1p32.3 CDKN2C Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P051138:
(about GC identifiers )
Start:
51,199,005 bp from pter
End:
51,212,897 bp from pter
Size:
13,893 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000001.9 NT_032977.8 Proteins for CDKN2C
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CDN2C_HUMAN, P42773 (See
protein sequence )Recommended Name: Cyclin-dependent kinase 4 inhibitor C Size : 168 amino acids; 18127 Da
Subunit : Heterodimer of p18 with CDK6
PDB structures from and Proteopedia : 1BU9 (3D)
 1G3N (3D)
 1IHB (3D)
 1MX2 (3D)
 1MX4 (3D)
 1MX6 (3D)
 
Secondary accessions : Q8TB83
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001253.1 NP_523240.1 ENSEMBL proteins: ENSP00000360826 ENSP00000262662 ENSP00000379452 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CDKN2C 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for CDKN2C: Assays for CDKN2C:
Protein
Domains/ Families for CDKN2C(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P42773 ProtoNet protein and cluster: P42773
1 Blocks protein family : IPB002110 Ankyrin repeat signature UniProtKB/Swiss-Prot: CDN2C_HUMAN, P42773 Similarity : Belongs to the CDKN2 cyclin-dependent kinase inhibitor familySimilarity : Contains 4 ANK repeats
Gene Function for CDKN2C
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001262 Applied Biosystems Silencer ® siRNAs for CDKN2C Sigma-Aldrich siRNA and siRNA Panels for CDKN2C Sigma-Aldrich shRNA Panels and shRNA for CDKN2C Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001262                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001262                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001262  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001262 UniProtKB/Swiss-Prot: CDN2C_HUMAN, P42773 Function : Interacts strongly with CDK6, weakly with CDK4. Inhibits cell growth and proliferationwith a correlated dependence on endogenous retinoblastoma protein RB
Genatlas biochemistry entry for CDKN2C :cyclin dependent kinase 6 (CDK6),inhibitor p18,regulator of cell cycle,passage through the G1checkpoint,altered in a low fraction of oligodendroglial tumors
15 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Cdkn2c) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for CDKN2C
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for CDKN2C (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CDKN2C 5/33 Interacting proteins for CDKN2C (ENSP00000360826 3 P42773 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 33
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
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Drugs & Compounds for CDKN2C (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for CDKN2C:Inhibitor
Browse Tocris compounds for CDKN2C 1 Novoseek chemical compound relationship for CDKN2C gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
threonine
0.00
2
8637234 (1), 8703847 (1)
About this table
Transcripts for CDKN2C(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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RNAi Products from Invitrogen ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001262 Sigma-Aldrich siRNA and siRNA Panels for CDKN2C Sigma-Aldrich shRNA Panels and shRNA for CDKN2C Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001262 NM_078626
REFSEQ mRNAs for CDKN2C gene (2 alternative transcripts): NM_001262.2 NM_078626.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001262 NM_078626
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001262                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001262                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001262  
4 DOTS entries : DT.312436 DT.100786268 DT.100739628 DT.100840226
24/156 AceView cDNA sequences (see all 156
):CR450289 BE206507 AW510372 BC017036 BM549119 AA617663 BM759636 BE855470 BM727816 AI421036 AA424974 BX353053 BM712661 CR612337 BM852457 AA482517 BM450858 BC005041 BE885012 BM552303 AU279804 BM762005 BM713150 BM928342
highest scoring ESTs for CDKN2C :AF041248 AA022638 AA022649 AA285308 AA417884 AA424974 AA452363 AA482517 AA495966 AA617663
Unigene Clusters for CDKN2C: Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) Hs.525324 [show with all ESTs ] , Hs.716664 [show with all ESTs ] Unigene Representative Sequences: AK091170 , NM_078626 GeneLoc Exon Structure 3 Ensembl transcripts including schematic representations : ENST00000371761
ENST00000262662
ENST00000396148
Expression for CDKN2C
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CDKN2C expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CDKN2C 1 / 2 / 3
5 probe-sets matching CDKN2C gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene clusters: Hs.525324 Hs.716664 Expression variation in blood from EXPOLDB for CDKN2C
UniProtKB/Swiss-Prot: CDN2C_HUMAN, P42773 Tissue specificity : Highest levels found in skeletal muscle. Also found in pancreas and heart
Orthologs for CDKN2C
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CDKN2C gene from 5/7 species (see all 7
)
About this table Species with no ortholog for CDKN2C ENSEMBL Gene Tree for CDKN2C Paralogs for CDKN2C (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CDKN2C gene CDKN2B 2 CDKN2D 2
SNPs/Variants for CDKN2C (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for CDKN2C (up to first 250kb)
Disorders & Mutations for CDKN2C
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 603369 UniProtKB/Swiss-Prot: CDN2C_HUMAN, P42773
Defects in CDKN2C are involved in tumor formation
10/32 Novoseek disease relationships for CDKN2C gene (see all 32
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
anaplastic oligodendroglioma
67.49
1
10515227 (1)
oligodendroglial tumors
66.66
2
10515227 (2)
retinoblastoma
66.32
7
15107819 (1), 15349907 (1), 16210085 (1), 15172750 (1) (see all 6 )
oligodendroglioma
57.29
11
11800646 (3), 10517502 (3), 10994011 (1)
allelic loss
51.51
1
10517502 (1)
lymphoid neoplasm
46.27
1
8637248 (1)
tumors
45.00
62
10515227 (4), 14645011 (4), 11263500 (3), 8637248 (3) (see all 30 )
acute leukemia
40.30
2
8637234 (1), 8652384 (1)
leukemogenesis
40.11
1
8628020 (1)
lymphoblastic leukemia acute
32.42
4
8637234 (2), 7606004 (1), 14513284 (1)
About this table Genetic Association Database: CDKN2C Human Genome Epidemiology Navigator: CDKN2C (9 documents)
Medical News for CDKN2C (Possibly Related Articles in
Doctor's Guide )
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Publications for CDKN2C (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/136 PubMed articles for CDKN2C gene (see all 136
): Growth suppression by p18, a p16INK4/MTS1- and p14INK4B/MTS2-related CDK6 inhibitor, correlates with wild-type pRb function. (PubMed id 8001816) 1, 2, 3, 4 Guan K.-L.... Xiong Y. (1994) Structure of the gene encoding the human cyclin-dependent kinase inhibitor p18 and mutational analysis in breast cancer. (PubMed id 9636670) 1, 2, 3, 4 Blais A....Labrie C. (1998) Tumor suppressor INK4: determination of the solution structure of p18INK4C and demonstration of the functional significance of loops in p18INK4C and p16INK4A. (PubMed id 10074345) 1, 3, 4 Li J....Tsai M.-D. (1999) A p18 mutant defective in CDK6 binding in human breast cancer cells. (PubMed id 8840966) 1, 3, 4 Lapointe J.... Labrie C. (1996) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A single nucleotide polymorphism in the 3'untranslated region of the CDKN2A gene is common in sporadic primary melanomas but mutations in the CDKN2B, CDKN2C, CDK4 and p53 genes are rare. (PubMed id 11668523) 3, 6 Kumar R....Hemminki K. (2001) Crystal structure of the CDK4/6 inhibitory protein p18INK4c provides insights into ankyrin-like repeat structure/function and tumor-derived p16INK4 mutations. (PubMed id 9437433) 3, 4 Venkataramani R.... Marmorstein R. (1998) Silencing of the p18INK4c gene by promoter hypermethylation in Reed-Sternberg cells in Hodgkin lymphomas. (PubMed id 14645011) 1, 3 Sanchez-Aguilera A....Garcia J.F. (2004) Deletions of CDKN2C in multiple myeloma: biological and clinical implications. (PubMed id 18829482) 1, 3 Leone P.E....Morgan G.J. (2008) Activation of protein kinase C promotes human cancer cell growth through downregulation of p18(INK4c). (PubMed id 15107819) 1, 3 Matsuzaki Y....Sakai T. (2004)
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Genome Databases showing CDKN2C
(According to
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HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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--
Specialized Databases showing CDKN2C (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CDKN2C (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Antibodies & Assays for CDKN2C   (p18INK4C)
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