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Aliases & Descriptions for CDKN2B
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CDK4I 1 , 2 INK4B 1 , 2 , 5 MTS-2 3 MTS2 1 , 2 , 3 , 5 OTTHUMP00000021154 2 OTTHUMP00000021155 2 P15 1 , 2 , 5 TP15 1 , 2 p14-INK4b 3 p14_INK4B 2 p15-INK4b 3 p15INK4B 3 p15INK4b 1 , 2 p15_INK4B 2
Descriptions CDK inhibitory protein 2 CDK4B inhibitor 2 Multiple tumor suppressor 2 2 , 3 cyclin-dependent kinase 4 inhibitor B 2 cyclin-dependent kinase inhibitor 2B 2 cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) 2 cyclin-dependent kinases 4 and 6 binding protein 2 p14_CDK inhibitor 2 p15 CDK inhibitor 2
Search outside databases for aliases for CDKN2B genePrevious GC identifers: GC09M022331 GC09M022204 GC09M021994
Summaries for CDKN2B (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for CDKN2B : This gene lies adjacent to the tumor suppressor gene CDKN2A in a region that is frequently mutatedand deleted in a wide variety of tumors. This gene encodes a cyclin-dependent kinase inhibitor,which forms a complex with CDK4 or CDK6, and prevents the activation of the CDK kinases, thus theencoded protein functions as a cell growth regulator that controls cell cycle G1 progression. Theexpression of this gene was found to be dramatically induced by TGF beta, which suggested its rolein the TGF beta induced growth inhibition. Two alternatively spliced transcript variants of thisgene, which encode distinct proteins, have been reported. [provided by RefSeq] UniProtKB/Swiss-Prot: CDN2B_HUMAN, P42772 Function : Interacts strongly with CDK4 and CDK6. Potent inhibitor. Potential effector of TGF-betainduced cell cycle arrest
Gene Wiki entry for CDKN2B
Genomic Location for CDKN2B
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the CDKN2B gene Entrez Gene cytogenetic band: 9p21 Ensembl cytogenetic band: 9p21.3 HGNC cytogenetic band: 9p21 CDKN2B Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09M021992:
(about GC identifiers )
Start:
21,992,902 bp from pter
End:
21,999,312 bp from pter
Size:
6,411 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000009.10 NT_008413.17 Proteins for CDKN2B
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: CDN2B_HUMAN, P42772 (See
protein sequence )Recommended Name: Cyclin-dependent kinase 4 inhibitor B Size : 138 amino acids; 14722 Da
Subunit : Heterodimer of CDKN2B with CDK4 or CDK6
Secondary accessions : Q6FI09
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_004927.2 NP_511042.1 ENSEMBL proteins: ENSP00000369487 ENSP00000276925 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CDKN2B 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for CDKN2B: Assays for CDKN2B:
Protein
Domains/ Families for CDKN2B(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P42772 ProtoNet protein and cluster: P42772
UniProtKB/Swiss-Prot: CDN2B_HUMAN, P42772 Similarity : Belongs to the CDKN2 cyclin-dependent kinase inhibitor familySimilarity : Contains 4 ANK repeats
Gene Function for CDKN2B
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004936 Applied Biosystems Silencer ® siRNAs for CDKN2B Sigma-Aldrich siRNA and siRNA Panels for CDKN2B Sigma-Aldrich shRNA Panels and shRNA for CDKN2B Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004936                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004936                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004936  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004936 UniProtKB/Swiss-Prot: CDN2B_HUMAN, P42772 Function : Interacts strongly with CDK4 and CDK6. Potent inhibitor. Potential effector of TGF-betainduced cell cycle arrest
Genatlas biochemistry entry for CDKN2B :cyclin dependent kinases 4 and 6 (CDK4/CDK6) inhibitor,p15,regulator of cell cycle,passage throughthe G1 checkpoint,tightly linked and highly homolog to CDKN2A
9 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Cdkn2b) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for CDKN2B
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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4 Sigma-Aldrich "Your Favorite Gene" Pathways for CDKN2B (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for CDKN2B 5/52 Interacting proteins for CDKN2B (P42772 1 ENSP00000276925 3 ) via UniProtKB, MINT, and/or STRING (see all 52
)About this table 5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
):
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Drugs & Compounds for CDKN2B (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Sigma-Aldrich Small Molecules for CDKN2B:Inhibitor
Browse Tocris compounds for CDKN2B 8 Novoseek chemical compound relationships for CDKN2B gene
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Transcripts for CDKN2B(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
Tagged/untagged cDNA clones from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_004936 Sigma-Aldrich siRNA and siRNA Panels for CDKN2B Sigma-Aldrich shRNA Panels and shRNA for CDKN2B Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_004936 NM_078487
REFSEQ mRNAs for CDKN2B gene (2 alternative transcripts): NM_004936.3 NM_078487.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004936 NM_078487
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_004936                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_004936                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_004936  
Additional cDNA sequence: AF004819.1 AF488409.1 AF488410.1 AF488411.1 AF488731.1 BC014469.1 BC018984.2 CR536529.1 L36844.1 U17075.1
5 DOTS entries : DT.40207564 DT.91660559 DT.95150832 DT.121147154 DT.75102662
24/264 AceView cDNA sequences (see all 264
):N44213 BM843979 AA826886 AF488410 BQ441101 BX502404 NM_004936 BF000057 BM126144 CR536529 AW328497 AF004819 BM831598 CK904818 AI859893 NM_078487 AI160044 BM701855 BM719878 CR604976 BG031050 BG178804 BM055160 CB160611
highest scoring ESTs for CDKN2B :AF004819 L36844 AA975511 AI983437 AU100332 AU279609 BC014469 BG718749 BG765173 BG767760
Unigene Cluster for CDKN2B: Cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4) Hs.72901 [show with all ESTs ] Unigene Representative Sequence: NM_078487 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for CDKN2B ExUns: 1a · 1b · 1c ^ 2a · 2b SP1 :     -       SP2 :          
About this scheme ECgene alternative splicing isoforms for CDKN2B 2 Ensembl transcripts including schematic representations : ENST00000380142
ENST00000276925
Expression for CDKN2B
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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CDKN2B expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for CDKN2B 1 / 2 / 3
9 probe-sets matching CDKN2B gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AGTCCTGCTTSOURCE GeneReport for Unigene cluster: Hs.72901 Expression variation in blood from EXPOLDB for CDKN2B
Orthologs for CDKN2B
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for CDKN2B gene from 4 species
About this table Species with no ortholog for CDKN2B ENSEMBL Gene Tree for CDKN2B Paralogs for CDKN2B (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for CDKN2B gene CDKN2C 2 CDKN2D 2
SNPs/Variants for CDKN2B (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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UniProtKB/Swiss-Prot: CDN2B_HUMAN, P42772 Polymorphism : Genetic variations in CDKN2B may underlie susceptibility to uveal melanoma[MIM:155720]. Uveal melanoma is the most common type of ocular malignant tumor, consisting ofovergrowth of uveal melanocytes and often preceded by a uveal nevus
HapMap Linkage Disequilibrium images for CDKN2B (up to first 250kb)
Disorders & Mutations for CDKN2B
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 600431 UniProtKB/Swiss-Prot: CDN2B_HUMAN, P42772
Defects in CDKN2B are involved in tumor formation
10/86 Novoseek disease relationships for CDKN2B gene (see all 86
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
retinoblastoma
71.64
14
16140969 (1), 17513607 (1), 9058294 (1), 9327828 (1) (see all 13 )
t-all
69.19
39
9041181 (5), 9399648 (4), 10778944 (4), 8630377 (2) (see all 15 )
tumors
68.54
343
7563186 (5), 11764089 (4), 8689637 (4), 9816033 (4) (see all 99 )
myelodysplastic syndromes
66.17
21
17095538 (2), 9269757 (2), 9531610 (2), 11167795 (2) (see all 13 )
multiple tumors
65.60
3
8957063 (1), 9827724 (1), 9698532 (1)
lymphoblastic leukemia acute
61.80
27
7780130 (2), 7994022 (2), 8683987 (1), 8816064 (1) (see all 21 )
allelic loss
61.79
6
7780130 (1), 9501299 (1), 11874489 (1), 8855819 (1)
allelic imbalance
61.41
7
18564286 (1), 18712977 (1), 18331779 (1)
primary tumor
61.06
12
7882348 (1), 8760309 (1), 9698478 (1), 8689636 (1) (see all 9 )
lymphoblastic leukemia acute childhood
59.77
14
9399648 (2), 9737691 (2), 8816064 (1), 12661005 (1) (see all 8 )
About this table Human Gene Mutation Database : CDKN2B Genetic Association Database: CDKN2B Human Genome Epidemiology Navigator: CDKN2B (66 documents)
Medical News for CDKN2B (Possibly Related Articles in
Doctor's Guide )
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Publications for CDKN2B (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/631 PubMed articles for CDKN2B gene (see all 631
): p15INK4B is a potential effector of TGF-beta-induced cell cycle arrest. (PubMed id 8078588) 1, 2, 3, 4 Hannon G.J. and Beach D. (1994) Contribution of germline mutations in BRCA2, P16(INK4A), P14(ARF) and P15 to uveal melanoma. (PubMed id 12556369) 3, 4, 6 Hearle N.... Houlston R.S. (2003) Mutation and homozygous deletion analyses of genes that control the G1/S transition of the cell cycle in skin melanoma: p53, p21, p16 and p15. (PubMed id 15960923) 1, 3, 6 Soto Martinez J.L....Lopez-Nevot M.A. (2005) Tumor suppressor INK4: refinement of p16INK4A structure and determination of p15INK4B structure by comparative modeling and NMR data. (PubMed id 10892805) 1, 3, 4 Yuan C.... Tsai M.D. (2000) Mutations in the p16INK4/MTS1/CDKN2, p15INK4B/MTS2, and p18 genes in primary and metastatic lung cancer. (PubMed id 7882351) 1, 3, 4 Okamoto A.... Harris C.C. (1995) Growth suppression by p18, a p16INK4/MTS1- and p14INK4B/MTS2-related CDK6 inhibitor, correlates with wild-type pRb function. (PubMed id 8001816) 1, 3, 4 Guan K.-L.... Xiong Y. (1994) Genotype phenotype correlations in Israeli colorectal cancer patients. (PubMed id 15523694) 3, 6 Starinsky S....Friedman E. (2005) DNA sequence and analysis of human chromosome 9. (PubMed id 15164053) 3, 4 Humphray S.J.... Dunham I. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) A single nucleotide polymorphism in the 3'untranslated region of the CDKN2A gene is common in sporadic primary melanomas but mutations in the CDKN2B, CDKN2C, CDK4 and p53 genes are rare. (PubMed id 11668523) 3, 6 Kumar R....Hemminki K. (2001)
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Genome Databases showing CDKN2B
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing CDKN2B
(According to HUGE )
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--
Specialized Databases showing CDKN2B (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for CDKN2B (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for CDKN2B:
Antibodies & Assays for CDKN2B   (p15INK4B)
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009