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Aliases for CDKN2AIPNL Gene

Aliases for CDKN2AIPNL Gene

  • CDKN2A Interacting Protein N-Terminal Like 2 3 5
  • CDKN2A-Interacting Protein N-Terminal-Like Protein 4

External Ids for CDKN2AIPNL Gene

Previous GeneCards Identifiers for CDKN2AIPNL Gene

  • GC05M133756
  • GC05M128922

Summaries for CDKN2AIPNL Gene

GeneCards Summary for CDKN2AIPNL Gene

CDKN2AIPNL (CDKN2A Interacting Protein N-Terminal Like) is a Protein Coding gene. An important paralog of this gene is CDKN2AIP.

Additional gene information for CDKN2AIPNL Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDKN2AIPNL Gene

Genomics for CDKN2AIPNL Gene

Regulatory Elements for CDKN2AIPNL Gene

Enhancers for CDKN2AIPNL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H134435 1.8 VISTA Ensembl ENCODE dbSUPER 12.8 -23.0 -23017 5 HDGF FOXA2 PKNOX1 ATF1 ARNT ARID4B SIN3A YY1 TCF12 GATA2 CDKN2AIPNL JADE2 ENSG00000248559 RNU6-456P SKP1 ENSG00000250994 LOC102546229
GH05H134508 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.6 -96.2 -96221 4 HDGF PKNOX1 FOXA2 ZFP64 ARID4B DMAP1 ZBTB7B YY1 ZNF766 ZNF416 DDX46 C5orf24 RPS10P11 CDKN2AIPNL ENSG00000248559 CATSPER3 SKP1 LINC01843 CAMLG RN7SL541P
GH05H134503 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -90.9 -90931 5 FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 FOS RUNX3 RPS10P11 CDKN2AIPNL ENSG00000248559 LINC01843 CAMLG JADE2 RNU6-456P
GH05H134543 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -130.2 -130233 3 RB1 SIN3A ZNF143 RUNX3 CREM IKZF2 EGR2 SMARCA5 CBFB ELF1 JADE2 RPS10P11 CDKN2AIPNL ENSG00000248559 TXNDC15 CDKL3 PCBD2 GC05M134520 GC05M134578
GH05H134521 1.4 ENCODE dbSUPER 11.7 -110.9 -110921 7 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B DDX46 ENSG00000270892 ENSG00000271128 ENSG00000248753 LOC105379188 C5orf66 RNU6-456P RPS10P11 CDKN2AIPNL SEC24A
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDKN2AIPNL on UCSC Golden Path with GeneCards custom track

Genomic Location for CDKN2AIPNL Gene

Chromosome:
5
Start:
134,402,065 bp from pter
End:
134,414,603 bp from pter
Size:
12,539 bases
Orientation:
Minus strand

Genomic View for CDKN2AIPNL Gene

Genes around CDKN2AIPNL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDKN2AIPNL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDKN2AIPNL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDKN2AIPNL Gene

Proteins for CDKN2AIPNL Gene

  • Protein details for CDKN2AIPNL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96HQ2-C2AIL_HUMAN
    Recommended name:
    CDKN2AIP N-terminal-like protein
    Protein Accession:
    Q96HQ2
    Secondary Accessions:
    • Q8WVE3

    Protein attributes for CDKN2AIPNL Gene

    Size:
    116 amino acids
    Molecular mass:
    13196 Da
    Quaternary structure:
    • Interacts with XRN2; the interaction is direct.

    Alternative splice isoforms for CDKN2AIPNL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CDKN2AIPNL Gene

Post-translational modifications for CDKN2AIPNL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CDKN2AIPNL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for CDKN2AIPNL Gene

Domains & Families for CDKN2AIPNL Gene

Gene Families for CDKN2AIPNL Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for CDKN2AIPNL Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for CDKN2AIPNL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96HQ2

UniProtKB/Swiss-Prot:

C2AIL_HUMAN :
  • Belongs to the CARF family.
Family:
  • Belongs to the CARF family.
genes like me logo Genes that share domains with CDKN2AIPNL: view

Function for CDKN2AIPNL Gene

Phenotypes From GWAS Catalog for CDKN2AIPNL Gene

Phenotypes for CDKN2AIPNL Gene

MGI mutant phenotypes for CDKN2AIPNL:
inferred from 1 alleles
GenomeRNAi human phenotypes for CDKN2AIPNL:
genes like me logo Genes that share phenotypes with CDKN2AIPNL: view

Animal Models for CDKN2AIPNL Gene

MGI Knock Outs for CDKN2AIPNL:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CDKN2AIPNL
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CDKN2AIPNL Gene

Localization for CDKN2AIPNL Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CDKN2AIPNL gene
Compartment Confidence
nucleus 4
cytosol 3
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CDKN2AIPNL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IBA --
GO:0005730 nucleolus IBA --
genes like me logo Genes that share ontologies with CDKN2AIPNL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for CDKN2AIPNL Gene

Pathways & Interactions for CDKN2AIPNL Gene

SuperPathways for CDKN2AIPNL Gene

No Data Available

Gene Ontology (GO) - Biological Process for CDKN2AIPNL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IBA --
genes like me logo Genes that share ontologies with CDKN2AIPNL: view

No data available for Pathways by source and SIGNOR curated interactions for CDKN2AIPNL Gene

Drugs & Compounds for CDKN2AIPNL Gene

No Compound Related Data Available

Transcripts for CDKN2AIPNL Gene

mRNA/cDNA for CDKN2AIPNL Gene

Unigene Clusters for CDKN2AIPNL Gene

CDKN2A interacting protein N-terminal like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CDKN2AIPNL
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CDKN2AIPNL Gene

No ASD Table

Relevant External Links for CDKN2AIPNL Gene

GeneLoc Exon Structure for
CDKN2AIPNL
ECgene alternative splicing isoforms for
CDKN2AIPNL

Expression for CDKN2AIPNL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDKN2AIPNL Gene

Protein differential expression in normal tissues from HIPED for CDKN2AIPNL Gene

This gene is overexpressed in Peripheral blood mononuclear cells (10.7) and Monocytes (6.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CDKN2AIPNL Gene



NURSA nuclear receptor signaling pathways regulating expression of CDKN2AIPNL Gene:

CDKN2AIPNL

SOURCE GeneReport for Unigene cluster for CDKN2AIPNL Gene:

Hs.156506

Evidence on tissue expression from TISSUES for CDKN2AIPNL Gene

  • Nervous system(4.3)
  • Lung(4.1)
genes like me logo Genes that share expression patterns with CDKN2AIPNL: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDKN2AIPNL Gene

Orthologs for CDKN2AIPNL Gene

This gene was present in the common ancestor of animals.

Orthologs for CDKN2AIPNL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDKN2AIPNL 33 34
  • 100 (n)
dog
(Canis familiaris)
Mammalia CDKN2AIPNL 33 34
  • 92.24 (n)
cow
(Bos Taurus)
Mammalia CDKN2AIPNL 33 34
  • 91.67 (n)
mouse
(Mus musculus)
Mammalia Cdkn2aipnl 33 16 34
  • 89.08 (n)
rat
(Rattus norvegicus)
Mammalia Cdkn2aipnl 33
  • 88.51 (n)
oppossum
(Monodelphis domestica)
Mammalia CDKN2AIPNL 34
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 2 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia CDKN2AIPNL 34
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cdkn2aipnl 33
  • 65.22 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.27136 33
zebrafish
(Danio rerio)
Actinopterygii cdkn2aipnl 33 34
  • 64.76 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7108 33
fruit fly
(Drosophila melanogaster)
Insecta CG31301 34
  • 5 (a)
OneToMany
Species where no ortholog for CDKN2AIPNL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDKN2AIPNL Gene

ENSEMBL:
Gene Tree for CDKN2AIPNL (if available)
TreeFam:
Gene Tree for CDKN2AIPNL (if available)

Paralogs for CDKN2AIPNL Gene

Paralogs for CDKN2AIPNL Gene

(1) SIMAP similar genes for CDKN2AIPNL Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for CDKN2AIPNL Gene

genes like me logo Genes that share paralogs with CDKN2AIPNL: view

Variants for CDKN2AIPNL Gene

Sequence variations from dbSNP and Humsavar for CDKN2AIPNL Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1001308979 -- 134,412,012(+) AGAGC(-/GGCTCCT)GGCTC intron-variant, upstream-variant-2KB
rs1002021217 -- 134,411,500(+) GGATG(A/G)AGGTT intron-variant, utr-variant-3-prime
rs1002172185 -- 134,406,509(+) TTCCA(A/G)TGGCA intron-variant
rs1002248581 -- 134,404,058(+) CCTAA(G/T)CCATC intron-variant
rs1002321613 -- 134,413,333(+) AATTA(C/T)CTCTG intron-variant, upstream-variant-2KB

Variation tolerance for CDKN2AIPNL Gene

Residual Variation Intolerance Score: 45.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.19; 4.22% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CDKN2AIPNL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDKN2AIPNL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CDKN2AIPNL Gene

Disorders for CDKN2AIPNL Gene

Relevant External Links for CDKN2AIPNL

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDKN2AIPNL

No disorders were found for CDKN2AIPNL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDKN2AIPNL Gene

Publications for CDKN2AIPNL Gene

  1. Structural basis and function of XRN2 binding by XTB domains. (PMID: 26779609) Richter H … Großhans H (Nature structural & molecular biology 2016) 3 4 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  3. Cold-inducible RBM3 inhibits PERK phosphorylation through cooperation with NF90 to protect cells from endoplasmic reticulum stress. (PMID: 26472337) Zhu X … Wellmann S (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2016) 3 60
  4. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 60
  5. TRIM65 regulates microRNA activity by ubiquitination of TNRC6. (PMID: 24778252) Li S … Dorf ME (Proceedings of the National Academy of Sciences of the United States of America 2014) 3 60

Products for CDKN2AIPNL Gene

Sources for CDKN2AIPNL Gene

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