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Aliases for CDKN2A-AS1 Gene

Subcategory (RNA class) for CDKN2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDKN2A-AS1 Gene

  • CDKN2A Antisense RNA 1 (Head To Head) 2 3
  • C9orf53 3 4
  • Chromosome 9 Open Reading Frame 53 2
  • CDKN2A Antisense Gene Protein 1 4
  • Susceptibility Protein NSG-X 3
  • CDKN2A Antisense RNA 1 4
  • Protein CDKN2A-AS1 4
  • BA149I2.3 3

External Ids for CDKN2A-AS1 Gene

Previous Symbols for CDKN2A-AS1 Gene

  • C9orf53

Summaries for CDKN2A-AS1 Gene

GeneCards Summary for CDKN2A-AS1 Gene

CDKN2A-AS1 (CDKN2A Antisense RNA 1 (Head To Head)) is an RNA Gene, and belongs to the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDKN2A-AS1 Gene

Genomics for CDKN2A-AS1 Gene

Genomic Location for CDKN2A-AS1 Gene

Start:
21,966,929 bp from pter
End:
21,967,754 bp from pter
Size:
826 bases
Orientation:
Plus strand

Genomic View for CDKN2A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDKN2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDKN2A-AS1 Gene

No data available for Regulatory Elements for CDKN2A-AS1 Gene

Proteins for CDKN2A-AS1 Gene

  • Protein details for CDKN2A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UH64-NSGX_HUMAN
    Recommended name:
    Susceptibility protein NSG-x
    Protein Accession:
    Q9UH64
    Secondary Accessions:
    • Q5VVJ4

    Protein attributes for CDKN2A-AS1 Gene

    Size:
    79 amino acids
    Molecular mass:
    8851 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDKN2A-AS1 Gene

Proteomics data for CDKN2A-AS1 Gene at MOPED

Post-translational modifications for CDKN2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDKN2A-AS1 Gene

Domains for CDKN2A-AS1 Gene

Protein Domains for CDKN2A-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CDKN2A-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDKN2A-AS1 Gene

Function for CDKN2A-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CDKN2A-AS1 Gene

Localization for CDKN2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDKN2A-AS1 Gene

Pathways for CDKN2A-AS1 Gene

SuperPathways for CDKN2A-AS1 Gene

No Data Available

Interacting Proteins for CDKN2A-AS1 Gene

Gene Ontology (GO) - Biological Process for CDKN2A-AS1 Gene

None

No data available for Pathways by source for CDKN2A-AS1 Gene

Transcripts for CDKN2A-AS1 Gene

mRNA/cDNA for CDKN2A-AS1 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for CDKN2A-AS1 Gene

No ASD Table

Relevant External Links for CDKN2A-AS1 Gene

GeneLoc Exon Structure for
CDKN2A-AS1
ECgene alternative splicing isoforms for
CDKN2A-AS1

Expression for CDKN2A-AS1 Gene

mRNA expression in normal human tissues for CDKN2A-AS1 Gene

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CDKN2A-AS1 Gene

genes like me logo Genes that share expressions with CDKN2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CDKN2A-AS1 Gene

Orthologs for CDKN2A-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for CDKN2A-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C9orf53 36
  • 99 (a)
OneToOne
Species with no ortholog for CDKN2A-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CDKN2A-AS1 Gene

ENSEMBL:
Gene Tree for CDKN2A-AS1 (if available)
TreeFam:
Gene Tree for CDKN2A-AS1 (if available)

Paralogs for CDKN2A-AS1 Gene

No data available for Paralogs for CDKN2A-AS1 Gene

Variants for CDKN2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDKN2A-AS1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs2188127 -- 21,965,233(+) ACAGC(C/G)CCCGT upstream-variant-2KB
rs3731256 -- 21,966,618(-) tacta(C/T)gataa upstream-variant-2KB
rs3731257 -- 21,966,222(-) TCTTA(C/T)TGTTT upstream-variant-2KB
rs5896957 -- 21,965,207(+) AGGGC(-/C)TTTTA upstream-variant-2KB
rs56018935 -- 21,966,528(+) AGGAA(C/G)TGGAC upstream-variant-2KB

Relevant External Links for CDKN2A-AS1 Gene

HapMap Linkage Disequilibrium report
CDKN2A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CDKN2A-AS1 Gene

Disorders for CDKN2A-AS1 Gene

No disorders were found for CDKN2A-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for CDKN2A-AS1 Gene

Publications for CDKN2A-AS1 Gene

  1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3
  3. Chromosome 9p21.3 genotype is associated with vascular dementia and Alzheimer's disease. (PMID: 19664850) Emanuele E. … Politi P. (Neurobiol. Aging 2011) 3
  4. Single nucleotide polymorphisms of matrix metalloproteinase 9 (MMP9) and tumor protein 73 (TP73) interact with Epstein-Barr virus in chronic lymphocytic leukemia: results from the European case-control study EpiLymph. (PMID: 21048031) Casabonne D. … de Sanjose S. (Haematologica 2011) 3
  5. Six sequence variants on chromosome 9p21.3 are associated with a positive family history of myocardial infarction: a multicenter registry. (PMID: 21385355) Scheffold T. … Haltern G. (BMC Cardiovasc Disord 2011) 3

Products for CDKN2A-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CDKN2A-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for CDKN2A-AS1
    • Block miRNA regulation of CDKN2A-AS1 using miScript Target Protectors

    Sources for CDKN2A-AS1 Gene

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