Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CDKN2A-AS1 Gene

Subcategory (RNA class) for CDKN2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDKN2A-AS1 Gene

  • CDKN2A Antisense RNA 1 (Head To Head) 2 3
  • C9orf53 3 4
  • Chromosome 9 Open Reading Frame 53 2
  • CDKN2A Antisense Gene Protein 1 4
  • Susceptibility Protein NSG-X 3
  • CDKN2A Antisense RNA 1 4
  • Protein CDKN2A-AS1 4
  • BA149I2.3 3

External Ids for CDKN2A-AS1 Gene

Previous HGNC Symbols for CDKN2A-AS1 Gene

  • C9orf53

Summaries for CDKN2A-AS1 Gene

GeneCards Summary for CDKN2A-AS1 Gene

CDKN2A-AS1 (CDKN2A Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDKN2A-AS1 Gene

Genomics for CDKN2A-AS1 Gene

Genomic Location for CDKN2A-AS1 Gene

Start:
21,966,929 bp from pter
End:
21,967,754 bp from pter
Size:
826 bases
Orientation:
Plus strand

Genomic View for CDKN2A-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDKN2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDKN2A-AS1 Gene

No data available for Regulatory Elements for CDKN2A-AS1 Gene

Proteins for CDKN2A-AS1 Gene

  • Protein details for CDKN2A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UH64-NSGX_HUMAN
    Recommended name:
    Susceptibility protein NSG-x
    Protein Accession:
    Q9UH64
    Secondary Accessions:
    • Q5VVJ4

    Protein attributes for CDKN2A-AS1 Gene

    Size:
    79 amino acids
    Molecular mass:
    8851 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDKN2A-AS1 Gene

Proteomics data for CDKN2A-AS1 Gene at MOPED

Post-translational modifications for CDKN2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDKN2A-AS1 Gene

Domains for CDKN2A-AS1 Gene

Protein Domains for CDKN2A-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CDKN2A-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDKN2A-AS1 Gene

Function for CDKN2A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for CDKN2A-AS1 Gene

Localization for CDKN2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDKN2A-AS1 Gene

Pathways for CDKN2A-AS1 Gene

SuperPathways for CDKN2A-AS1 Gene

No Data Available

Interacting Proteins for CDKN2A-AS1 Gene

Gene Ontology (GO) - Biological Process for CDKN2A-AS1 Gene

None

No data available for Pathways by source for CDKN2A-AS1 Gene

Transcripts for CDKN2A-AS1 Gene

mRNA/cDNA for CDKN2A-AS1 Gene

(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate CDKN2A-AS1
    • Block miRNA regulation of CDKN2A-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for CDKN2A-AS1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for CDKN2A-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for CDKN2A-AS1 Gene

    No ASD Table

    Relevant External Links for CDKN2A-AS1 Gene

    GeneLoc Exon Structure for
    CDKN2A-AS1
    ECgene alternative splicing isoforms for
    CDKN2A-AS1

    Expression for CDKN2A-AS1 Gene

    mRNA expression in normal human tissues for CDKN2A-AS1 Gene

    Integrated Proteomics: protein expression from ProteomicsDB and MOPED for CDKN2A-AS1 Gene

    genes like me logo Genes that share expressions with CDKN2A-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CDKN2A-AS1 Gene

    Orthologs for CDKN2A-AS1 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for CDKN2A-AS1 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia C9orf53 36
    • 99 (a)
    OneToOne
    Species with no ortholog for CDKN2A-AS1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for CDKN2A-AS1 Gene

    ENSEMBL:
    Gene Tree for CDKN2A-AS1 (if available)
    TreeFam:
    Gene Tree for CDKN2A-AS1 (if available)

    Paralogs for CDKN2A-AS1 Gene

    No data available for Paralogs for CDKN2A-AS1 Gene

    Variants for CDKN2A-AS1 Gene

    Sequence variations from dbSNP and Humsavar for CDKN2A-AS1 Gene

    SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
    rs2188127 -- 21,965,233(+) ACAGC(C/G)CCCGT upstream-variant-2KB
    rs3731256 -- 21,966,618(-) tacta(C/T)gataa upstream-variant-2KB
    rs3731257 -- 21,966,222(-) TCTTA(C/T)TGTTT upstream-variant-2KB
    rs5896957 -- 21,965,207(+) AGGGC(-/C)TTTTA upstream-variant-2KB
    rs56018935 -- 21,966,528(+) AGGAA(C/G)TGGAC upstream-variant-2KB

    Relevant External Links for CDKN2A-AS1 Gene

    HapMap Linkage Disequilibrium report
    CDKN2A-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for CDKN2A-AS1 Gene

    Disorders for CDKN2A-AS1 Gene

    No disorders were found for CDKN2A-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for CDKN2A-AS1 Gene

    Publications for CDKN2A-AS1 Gene

    1. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
    2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3
    3. Chromosome 9p21.3 genotype is associated with vascular dementia and Alzheimer's disease. (PMID: 19664850) Emanuele E. … Politi P. (Neurobiol. Aging 2011) 3
    4. Single nucleotide polymorphisms of matrix metalloproteinase 9 (MMP9) and tumor protein 73 (TP73) interact with Epstein-Barr virus in chronic lymphocytic leukemia: results from the European case-control study EpiLymph. (PMID: 21048031) Casabonne D. … de Sanjose S. (Haematologica 2011) 3
    5. Six sequence variants on chromosome 9p21.3 are associated with a positive family history of myocardial infarction: a multicenter registry. (PMID: 21385355) Scheffold T. … Haltern G. (BMC Cardiovasc Disord 2011) 3

    Products for CDKN2A-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate CDKN2A-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for CDKN2A-AS1
      • Block miRNA regulation of CDKN2A-AS1 using miScript Target Protectors

      Sources for CDKN2A-AS1 Gene

      Back to Top

      Content