CDKL3 Gene
protein-coding GIFtS: 50
GCID: GC05M133541
|
|
cyclin-dependent kinase-like 3
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Aliases
for CDKL3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Cyclin-Dependent Kinase-Like 31 2 | | NKIAMRE1 2 3 5 | | Serine/Threonine-Protein Kinase NKIAMRE2 3 | | EC 2.7.11.223 8 | | Serine-Threonine Protein Kinase NKIAMRE2 | | EC 2.7.118 |
Export aliases for CDKL3 gene to outside databasesPrevious GC identifers: GC05M133292 GC05M134158 GC05M133664 GC05M133710 GC05M133662 GC05M128818 |
Summaries
for CDKL3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for CDKL3:
The protein encoded by this gene is a member of cyclin-dependent protein kinase (CDK) family. CDK family members arehighly similar to the gene products of Saccharomyces cerevisiae cdc28, and Schizosaccharomyces pombe cdc2, and areknown to be important regulators of cell cycle progression. This gene was identified as a gene absent in leukemicpatients with chromosome 5q deletion. This loss may be an important determinant of dysmyelopoiesis. Alternativesplicing results in multiple transcript variants encoding different isoforms. (provided by RefSeq, Jul 2008)
|
Genomic Views
for CDKL3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000005.9 NC_018916.1 NT_034772.6
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the CDKL3 gene promoter:
COUP-TF1 GR Sp1 COUP HNF-4alpha2 HNF-4alpha1 COUP-TF ARP-1 GR-alpha
Other transcription factors
Search SABiosciences Chromatin IP Primers for CDKL3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CDKL3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 5q31 Ensembl cytogenetic band: 5q31.1 HGNC cytogenetic band: 5q31CDKL3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 5 GeneLoc Exon Structure GeneLoc location for GC05M133541: view genomic region
(about GC identifiers)
Start:
|
133,541,305 bp from pter |
End:
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133,706,738 bp from pter |
Size:
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165,434 bases |
Orientation:
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minus strand |
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Proteins
for CDKL3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: CDKL3_HUMAN, Q8IVW4 (See
protein sequence)Recommended Name: Cyclin-dependent kinase-like 3 Size: 592 amino acids; 67514 Da
Subcellular location: Cytoplasm (By similarity)
Secondary accessions: D3DQA0 D3DQA1 Q9P114Alternative splicing: 2 isoforms: Q8IVW4-1 Q8IVW4-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for CDKL3: NX_Q8IVW4
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8IVW4
4/9 DME Specific Peptides for CDKL3 (Q8IVW4) (see all 9)
CDKL3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001107047.1 NP_057592.2
ENSEMBL proteins: ENSP00000430777 ENSP00000427738 ENSP00000265334 ENSP00000427836 ENSP00000428500 ENSP00000428689 ENSP00000428498 ENSP00000430496 ENSP00000427964 ENSP00000399807 ENSP00000441545 ENSP00000395559
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005737 | cytoplasm |
IEA | -- |
CDKL3 for ontologies About GeneDecksing
CDKL3 Antibody Products:
Assay Products for CDKL3: |
Protein
Domains /
Families
for CDKL3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
CDKL3 for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8IVW4ProtoNet protein and cluster: Q8IVW4 UniProtKB/Swiss-Prot: CDKL3_HUMAN, Q8IVW4Domain: The [NKR]KIAxRE motif seems to be a cyclin-binding regionSimilarity: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamilySimilarity: Contains 1 protein kinase domain |
Function
for CDKL3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: CDKL3_HUMAN, Q8IVW4Catalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme Numbers (IUBMB): EC 2.7.11.221 2 EC 2.7.112
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CDKL3 (see all 9)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CDKL3 (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector (see all 2): CDKL3 (NM_016508) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CDKL3 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CDKL3 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CDKL3 |
Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view): About this table
CDKL3 for ontologies About GeneDecksing
3 GenomeRNAi human phenotypes for CDKL3:
Animal Models:
1 MGI phenotypic allele  for Cdkl3 (no phenotypes)
CDKL3 for phenotypes About GeneDecksing
|
Pathways & Interactions
for CDKL3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for CDKL3
STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)
3 Interacting proteins for CDKL3 (ENSP000002653344) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table
CDKL3 for ontologies About GeneDecksing
|
Drugs & Compounds
for CDKL3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for CDKL3
2 HMDB Compounds for CDKL3 About this table
Search CenterWatch for drugs/clinical trials and news about CDKL3
|
Transcripts
for CDKL3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for CDKL3 gene (2 alternative transcripts): NM_001113575.1 NM_016508.3 Unigene Cluster for CDKL3: Cyclin-dependent kinase-like 3 Hs.719926 [show with all ESTs]Unigene Representative Sequence: BC04179915 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000520515(uc011cxm.1 uc011cxn.1) ENST00000518409 ENST00000520693
ENST00000519312 ENST00000265334(uc003kzf.4 uc011cxq.2) ENST00000518990
ENST00000523054 ENST00000521118 ENST00000520592 ENST00000523832 ENST00000521755
ENST00000522501 ENST00000435240(uc011cxo.1) ENST00000536186(uc010jdw.2 uc011cxp.1)
ENST00000435211(uc003kzg.4 uc011cxr.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for CDKL3 (see all 9)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for CDKL3 (see all 3)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): CDKL3 (NM_016508) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for CDKL3 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CDKL3 |
Additional cDNA sequence: AF130372.1 AK294559.1 AK294740.1 AK297586.1 AK299305.1 AK301802.1 AK310955.1 BC041799.1 7 DOTS entries: DT.100740186 DT.411678 DT.103234 DT.411680 DT.99932209 DT.100685507 DT.411679 3 AceView cDNA sequences: AF087989 H99529 H99528
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for CDKL3 About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 |
|---|
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| SP1: | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | | | |
| SP2: | | | | | | | | | | | - | | - | | - | | - | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | - | | - | | | | | | | |
ECgene alternative splicing isoforms for CDKL3
|
Expression
for CDKL3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| CDKL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCAGAACTGA
About this image
See CDKL3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for CDKL3
SOURCE GeneReport for Unigene cluster: Hs.719926
SABiosciences Custom PCR Arrays for CDKL3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for CDKL3
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat CDKL3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CDKL3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CDKL3 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CDKL3 |
Orthologs
for CDKL3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for CDKL3 gene from 3/14 species (see all 14) About this table
ENSEMBL Gene Tree for CDKL3 (if available)
TreeFam Gene Tree for CDKL3 (if available) |
Paralogs
for CDKL3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for CDKL3 gene
- CDKL12 CDKL22 CDKL52 MOK2 MAK2 CDKL42 ICK2
18/66 SIMAP similar genes for CDKL3 using alignment to 10 protein entries: CDKL3_HUMAN (see all proteins)
(see all similar genes):CDKL4 CDC2 CDKL2 MAP4K4 CDK18 CCRK
MAPK7 CDKL1 CAMK1 CDK3 CDK7 MAK
NEK6 TSSK4 CDK1 CDK20 CDK5 DYRK4
CDKL3 for paralogs About GeneDecksing
|
Genomic Variants
for CDKL3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 5 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for CDKL3 (133541305 - 133706738 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for CDKL3: --
Human Gene Mutation Database (HGMD): CDKL3
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CDKL3 |
|
Disorders
/ Diseases
for CDKL3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 CDKL3 for disorders About MalaCards
CDKL3 for disorders About GeneDecksing
OMIM gene information: 608459
OMIM disorders: --
Human Genome Epidemiology (HuGE) Navigator: CDKL3 (1 document)
Export disorders for CDKL3 gene to outside databases
|
Publications
for CDKL3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for CDKL3 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with CDKL3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Identification of NKIAMRE, the human homologue to the mitogen-activated protein kinase-/cyclin-dependent kinase-related protein kinase NKIATRE, and its loss in leukemic blasts with chromosome arm 5q deletion. (PubMed id 10463609)1, 3 Midmer M....Zanke B.W. (1999)
- NKIAMRE, a novel conserved CDC2-related kinase with features of both mitogen-activated protein kinases and cyclin-dependent kinases. (PubMed id 12927787)1, 9 Yee K.W....Minden M.D. (2003)
- Enhancement of cell proliferation in various mammalian cell lines by gene insertion of a cyclin-dependent kinase homolog. (PubMed id 17945021)1, 9 Jaluria P....Shiloach J. (2007)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
- Inactivation of the CDKL3 gene at 5q31.1 by a balanced t(X;5) translocation associated with nonspecific mild mental retardation. (PubMed id 18412109)1 Dubos A....Hanauer A. (2008)
- Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (2008)
- Patterns of somatic mutation in human cancer genomes. (PubMed id 17344846)2 Greenman C.... Stratton M.R. (2007)
- Mutations in the X-linked cyclin-dependent kinase-like 5 (CDKL5/STK9) gene are associated with severe neurodevelopmental retardation. (PubMed id 15499549)1 Tao J.... Kalscheuer V.M. (2004)
|
External Searches for CDKL3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing CDKL3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing CDKL3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CDKL3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
|
About This Section
| Patent Information for CDKL3 gene:
Search GeneIP for patents involving CDKL3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for CDKL3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat CDKL3 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing CDKL3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat CDKL3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat CDKL3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat CDKL3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat CDKL3 |
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 | | | CDKL3 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for CDKL3 |
|  |  |  | | | | ThermoFisher Antibodies for CDKL3 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat CDKL3 |
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