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Aliases & Descriptions for CDK5
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 2.7.11.22 3 | | PSSALRE 1, 2 |
| | | Descriptions |
|---|
| Serine/threonine-protein kinase PSSALRE 3 | | TPKII catalytic subunit 3 | | Tau protein kinase II catalytic subunit 3 | | cyclin-dependent kinase 5 2, 3 | | protein kinase CDK5 splicing 2 |
|
| | Search outside databases for aliases for CDK5 genePrevious GC identifers: GC07M148997 GC07M150065 GC07M150142 GC07M150188 |
Summaries for CDK5(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: CDK5_HUMAN, Q00535Function: Probably involved in the control of the cell cycle. Interacts with D1 and D3-type G1 cyclins. Can phosphorylate histone H1, tau, MAP2 and NF-H and NF-M. Also interacts with p35 which activates the kinaseGene Wiki entry for CDK5 (Cyclin-dependent_kinase_5) |
Genomic Location for CDK5
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CDK5 gene 
Entrez Gene cytogenetic band: 7q36 Ensembl cytogenetic band: 7q36.1 HGNC cytogenetic band: 7q36CDK5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M150381:
(about GC identifiers)
Start:
|
150,381,832 bp from pter |
End:
|
150,385,929 bp from pter |
Size:
|
4,098 bases |
Orientation:
|
minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 150,080,438-150,084,535 |
RefSeq DNA sequence:- NC_000007.12 NT_007914.14 NT_079596.2
| Proteins for CDK5
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CDK5_HUMAN, Q00535 (See
protein sequence)Recommended Name: Cell division protein kinase 5 Size: 292 amino acids; 33304 Da
Subunit: Heterodimer of a catalytic subunit and a regulatory subunit (p35). Found in a trimolecular complex with CABLES1 and ABL1. Interacts with CABLES1 (By similarity). Interacts with AATK
Subcellular location: Cytoplasm (By similarity). Cell projection, lamellipodium (By similarity). Cell projection, growth cone (By similarity). Note=In axonal growth cone with extension to the peripheral lamellipodia (By similarity)
PDB structures from and Proteopedia :1H4L (3D)
 1LFR (3D)
 1UNG (3D)
 1UNH (3D)
 1UNL (3D)
 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004926.1
ENSEMBL proteins: ENSP00000297518
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CDK5 
5/11 Gene Ontology (GO) cellular component terms (links to tree view) (see all 11
): About this table
Antibodies for CDK5: Assays for CDK5: | Protein
Domains/ Families for CDK5(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q00535
ProtoNet protein and cluster: Q00535 UniProtKB/Swiss-Prot: CDK5_HUMAN, Q00535Similarity: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamilySimilarity: Contains 1 protein kinase domain | Gene Function for CDK5
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (CDK5) | |  | Millipore RNAi Products for the Analysis of CDK5 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (CDK5) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004935
Applied Biosystems Silencer® siRNAs for CDK5
Sigma-Aldrich siRNA and siRNA Panels for CDK5  Sigma-Aldrich shRNA Panels and shRNA for CDK5  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004935                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004935                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004935 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004935
UniProtKB/Swiss-Prot: CDK5_HUMAN, Q00535Function: Probably involved in the control of the cell cycle. Interacts with D1 and D3-type G1 cyclins. Can phosphorylate histone H1, tau, MAP2 and NF-H and NF-M. Also interacts with p35 which activates the kinaseCatalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme Number (IUBMB): EC 2.7.11.22 Genatlas biochemistry entry for CDK5:cyclin dependent kinase 5,specifically expressed in postmitotic neurons and in muscle cells,associating for activation with its regulatory subunit p35 (CDK5R1) to form one of the two main tau-kinases,complexing with cyclin D (D1,D2,D3),involved in cell-cycle regulation of G1 to S transition,phosphorylating DARRP2 dopamine and cAMP regulated and modulating dopamine signaling,associating with p25,a truncated form of p35 with a resultant increase in CDK5 kinase activity,hyperphosphorylation of tau which reduces tau's ability to associate microtubules7 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Cdk5):
5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9
): About this table | Pathways & Interactions for CDK5
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/9 Sigma-Aldrich "Your Favorite Gene" Pathways for CDK5 (Your Favorite Gene powered by Ingenuity) (see all 9
) 
Gene Network CentralTM Interacting Genes and Proteins Network for CDK5 
5/98 Interacting proteins for CDK5 (ENSP000002975183 Q005351, 2) via UniProtKB, MINT, and/or STRING (see all 98
)About this table
5/39 Gene Ontology (GO) biological process terms (links to tree view) (see all 39
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001764 | neuron migration |
IEA | -- | | GO:0001963 | synaptic transmission, dopaminergic |
IEA | -- | | GO:0006468 | protein amino acid phosphorylation |
IEA | -- | | GO:0006886 | intracellular protein transport |
IEA | -- | | GO:0007160 | cell-matrix adhesion |
IEA | -- | About this table
|
Drugs & Compounds for CDK5(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for CDK5 |
 | Sigma-Aldrich Small Molecules for CDK5: Inhibitor |
Compounds for CDK5 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Apigenin | Protein kinase inhibitor | [520-36-5] | | Kenpaullone | Potent cyclin-dependent kinase inhibitor. Also inhibits GSK-3 | [142273-20-9] | About this table
10/25 Novoseek chemical compound relationships for CDK5 gene (see all 25
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| purvalanol |
69.81 |
1 |
16611631 (1) |
| kenpaullone |
67.18 |
1 |
15950951 (1) |
| glycogen |
66.77 |
60 |
8627328 (2), 11805297 (2), 16818492 (2), 7566342 (1) (see all 37) |
| threonine |
62.76 |
40 |
17697781 (1), 17341134 (1), 18184784 (1), 8306873 (1) (see all 22) |
| okadaic acid |
22.84 |
2 |
9599018 (1) |
| lithium |
19.34 |
3 |
15979805 (2), 10629766 (1) |
| pd 98,059 |
18.90 |
3 |
15695523 (1), 15485494 (1) |
| amino acid |
18.31 |
1 |
12230554 (1) |
| colchicine |
10.16 |
5 |
12941380 (2), 15979805 (1), 15950951 (1) |
| gtp |
9.80 |
15 |
12596920 (2), 15492003 (2), 10884379 (1), 18948252 (1) |
About this table
|
Transcripts for CDK5(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (CDK5) | |  | Millipore RNAi Products for the Analysis of CDK5 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (CDK5) |               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004935
Sigma-Aldrich siRNA and siRNA Panels for CDK5  Sigma-Aldrich shRNA Panels and shRNA for CDK5  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004935 REFSEQ mRNAs for CDK5 gene: NM_004935.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004935               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004935                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004935                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004935  Additional cDNA sequence: AK026533.1 AY049778.1 AY927560.1 BC005115.1 BT006680.1 CR457041.1 DQ411039.1 L04658.1 X66364.1 11 DOTS entries: DT.319808 DT.97839636 DT.121074391 DT.100022516 DT.121074369 DT.121074491 DT.95132417 DT.95372485 DT.95372486 DT.121074488 DT.92466216 24/122 AceView cDNA sequences (see all 122
):N52899 CF128142 CA431641 BX489021 BX112764 AV709223 BU529114 BT006680 BM727541 CA429180 AA952919 BC005115 AK026533 CB144453 AI086997 BF434699 AI306490 AA482510 BV177642 AY049778 BE673479 AA306623 NM_004935 X66364
highest scoring ESTs for CDK5:L04658 X66364 AA159400 AA306623 AI279489 AI360563 AI557251 AI589890 AK026533 AU099986 Unigene Cluster for CDK5: Cyclin-dependent kinase 5 Hs.647078 [show with all ESTs]Unigene Representative Sequence: BG577212
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CDK5 (see all 7
)
| ExUns: | 1 | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6a | · | 6b | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | · | 9c | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | ^ | 13a | · | 13b | |
| SP1: | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | - |   | |   | - |   | |   | |   | |   | |   | - |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CDK5
1 Ensembl transcript including schematic representation: ENST00000297518
|
Expression for CDK5
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CDK5 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CDK5
1 / 2 / 3 4 probe-sets matching CDK5 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TGGTCAGCCG
SOURCE GeneReport for Unigene cluster: Hs.647078
|
Orthologs for CDK5
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CDK5 gene from 5/17 species (see all 17
)
About this table Species with no ortholog for CDK5
ENSEMBL Gene Tree for CDK5 | Paralogs for CDK5(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CDK5 gene
- PFTK22 PFTK12
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for CDK5(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CDK5 (up to first 250kb)
|
Disorders & Mutations for CDK5
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 123831
10/35 Novoseek disease relationships for CDK5 gene (see all 35
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neurofibrillary tangles |
77.94 |
8 |
8870824 (2), 9666145 (1), 12719630 (1), 11231011 (1) (see all 7) |
| tauopathies |
75.94 |
3 |
17113760 (2), 17908241 (1) |
| alzheimers disease |
74.68 |
58 |
9666145 (2), 18350355 (2), 12230554 (2), 15917097 (2) (see all 38) |
| paired helical filament |
74.65 |
8 |
9666145 (1), 15975083 (1), 8870824 (1), 11065131 (1) (see all 5) |
| neurodegeneration |
71.43 |
39 |
16932754 (4), 15009631 (2), 14673208 (2), 17932412 (2) (see all 25) |
| neurodegenerative diseases |
70.49 |
59 |
17979810 (4), 16600851 (2), 17003520 (2), 15135890 (2) (see all 31) |
| amyotrophic lateral sclerosis |
57.00 |
22 |
14673208 (2), 9596352 (2), 11464850 (2), 10509378 (1) (see all 14) |
| brain diseases |
45.38 |
3 |
17241267 (1), 15917097 (1) |
| senile plaques |
44.10 |
2 |
12719630 (1), 14681576 (1) |
| retinoblastoma |
37.40 |
2 |
18351461 (2) |
About this table
Human Genome Epidemiology Navigator: CDK5 (26 documents)
|
Medical News for CDK5(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CDK5 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/469 PubMed articles for CDK5 gene (see all 469
):- A family of human cdc2-related protein kinases. (PubMed id 1639063)2, 3, 4 Meyerson M....Tsai L.H. (1992)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Apoptosis-associated tyrosine kinase is a Cdk5 activator p35 binding protein. (PubMed id 14521924)3, 4 Honma N....Hisanaga S. (2003)
- Chromosomal mapping of human CDK2, CDK4, and CDK5 cell cycle kinase genes. (PubMed id 8275715)2, 3 Demetrick D.J....Beach D.H. (1994)
- Cdk5 regulates the organization of Nestin and its association with p35. (PubMed id 12832492)1, 3 Sahlgren C.M....Eriksson J.E. (2003)
- Cdk5 regulates STAT3 activation and cell proliferation in medullary thyroid carcinoma cells. (PubMed id 17145757)1, 3 Lin H....Lin S.Y. (2007)
- Regulation of cyclin-dependent kinase 5 catalytic activity by phosphorylation. (PubMed id 10500146)1, 3 Sharma P....Pant H.C. (1999)
- Novel Genetic Tools Reveal Cdk5's Major Role in Golgi Fragmentation in Alzheimer's Disease. (PubMed id 18480410)1, 3 Sun K.H....Shah K. (2008)
- Identification of nuclear import mechanisms for the neuronal Cdk5 activator. (PubMed id 17060323)1, 3 Fu X....Qi R.Z. (2006)
- Cables links Cdk5 and c-Abl and facilitates Cdk5 tyrosine phosphorylation, kinase upregulation, and neurite outgrowth. (PubMed id 10896159)1, 3 Zukerberg L.R....Tsai L.H. (2000)
|
Search for CDK5
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CDK5
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CDK5
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CDK5(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CDK5(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CDK5:

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Incremental update: 13 Oct 2009
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