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Aliases & Descriptions for CDK4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CMM3 2, 5 | | EC 2.7.11.22 3 | | MGC14458 2 | | PSK-J3 1, 2, 3 |
| | | Descriptions |
|---|
| cell division kinase 4 2 | | cyclin-dependent kinase 4 2, 3 | | melanoma cutaneous malignant, 3 2 |
|
| | Search outside databases for aliases for CDK4 genePrevious GC identifers: GC12M057743 GC12M058284 GC12M057858 |
Summaries for CDK4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CDK4: The protein encoded by this gene is a member of the Ser/Thr protein kinase family. This protein is highly similar to the gene products of S. cerevisiae cdc28 and S. pombe cdc2. It is a catalytic subunit of the protein kinase complex that is important for cell cycle G1 phase progression. The activity of this kinase is restricted to the G1-S phase, which is controlled by the regulatory subunits D-type cyclins and CDK inhibitor p16(INK4a). This kinase was shown to be responsible for the phosphorylation of retinoblastoma gene product (Rb). Mutations in this gene as well as in its related proteins including D-type cyclins, p16(INK4a) and Rb were all found to be associated with tumorigenesis of a variety of cancers. Multiple polyadenylation sites of this gene have been reported. [provided by RefSeq] UniProtKB/Swiss-Prot: CDK4_HUMAN, P11802Function: Probably involved in the control of the cell cycleGene Wiki entry for CDK4 (Cyclin-dependent_kinase_4) |
Genomic Location for CDK4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CDK4 gene 
Entrez Gene cytogenetic band: 12q14 Ensembl cytogenetic band: 12q14.1 HGNC cytogenetic band: 12q13CDK4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M056428:
(about GC identifiers)
Start:
|
56,428,270 bp from pter |
End:
|
56,432,431 bp from pter |
Size:
|
4,162 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000012.10 NT_029419.11
| Proteins for CDK4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CDK4_HUMAN, P11802 (See
protein sequence)Recommended Name: Cell division protein kinase 4 Size: 303 amino acids; 33730 Da
Subunit: Forms a stable complex with D-type G1 cyclins. Interacts with SEI1 and ZNF655/VIK
PDB structures from and Proteopedia :1LD2 (3D)
 2W96 (3D)
 2W99 (3D)
 2W9F (3D)
 2W9Z (3D)
 3G33 (3D)
 
Secondary accessions: O00576Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_000066.1
ENSEMBL proteins: ENSP00000316889 ENSP00000257904
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: CDK4 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CDK4: Assays for CDK4: | Protein
Domains/ Families for CDK4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P11802
ProtoNet protein and cluster: P11802 UniProtKB/Swiss-Prot: CDK4_HUMAN, P11802Similarity: Belongs to the protein kinase superfamily. CMGC Ser/Thr protein kinase family. CDC2/CDKX subfamilySimilarity: Contains 1 protein kinase domain | Gene Function for CDK4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (CDK4) | |  | Millipore RNAi Products for the Analysis of CDK4 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (CDK4) |                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_000075
Applied Biosystems Silencer® siRNAs for CDK4
Sigma-Aldrich siRNA and siRNA Panels for CDK4  Sigma-Aldrich shRNA Panels and shRNA for CDK4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_000075                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000075                                  untagged cDNA clones in CMV expression vector (see all 5): NM_000075 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_000075
UniProtKB/Swiss-Prot: CDK4_HUMAN, P11802Function: Probably involved in the control of the cell cycleCatalytic activity: ATP + a protein = ADP + a phosphoproteinEnzyme regulation: Phosphorylation at Thr-172 is necessary for enzymatic activity (By similarity)Enzyme Number (IUBMB): EC 2.7.11.22 Genatlas biochemistry entry for CDK4:cyclin dependent kinase 4 involved in cell cycle regulation (G1 to S transition),complexing with cyclin D (D1,D2,D3),amplified in malignant glioblastoma and anaplastic astrocytoma,and in diffuse large B cell lymphoma ; amplified in osteosarcoma with OS9,SAS and PRIM1and in sporadic breast carcinomas,predisposing to familial melanoma by inducing abnormal repair of ultraviolet radiation. Loss of CDK4 expression causes insulin deficient diabetes,and CDK4 activation results in B islet cell hyperplasia in mice15/21 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Cdk4) (see all 21
):
5 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for CDK4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/14 Sigma-Aldrich "Your Favorite Gene" Pathways for CDK4 (Your Favorite Gene powered by Ingenuity) (see all 14
) 
Gene Network CentralTM Interacting Genes and Proteins Network for CDK4 
5/132 Interacting proteins for CDK4 (ENSP000002579043 P118021, 2) via UniProtKB, MINT, and/or STRING (see all 132
)About this table
5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
): About this table
|
Drugs & Compounds for CDK4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for CDK4 |
 | Sigma-Aldrich Small Molecules for CDK4: Inhibitor |
Compounds for CDK4 available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| Ryuvidine | Cyclin-dependent kinase 4 (cdk4) inhibitor | [265312-55-8] | | NSC 625987 | Cyclin-dependent kinase 4 (cdk4) inhibitor | [141992-47-4] | About this table
10/52 Novoseek chemical compound relationships for CDK4 gene (see all 52
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| fascaplysin |
84.43 |
12 |
10973815 (4), 16816972 (2), 16936279 (1), 16904725 (1) (see all 6) |
| nu6102 |
69.63 |
2 |
15928920 (2) |
| 17-(allylamino)-17-demethoxygeldanamycin |
63.78 |
4 |
18281495 (1), 18245548 (1), 18193424 (1), 17157164 (1) |
| imidazo[1,2-a]pyridine |
42.32 |
1 |
12941325 (1) |
| thymidine |
40.22 |
6 |
15665290 (1), 10432388 (1), 8622883 (1), 12153614 (1) (see all 6) |
| bromodeoxyuridine |
36.49 |
3 |
8988060 (2), 15755480 (1) |
| pga2 |
30.47 |
7 |
8622677 (4), 8621603 (1) |
| threonine |
28.91 |
12 |
10851085 (2), 17892862 (2), 12861061 (1), 18855578 (1) (see all 7) |
| apigenin |
27.71 |
4 |
18656338 (1), 11299771 (1), 15620704 (1) |
| berberine |
27.35 |
5 |
18379040 (1), 19189664 (1), 16621886 (1), 16505103 (1) |
About this table
|
Transcripts for CDK4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
| Inhib. RNA: |  | Invitrogen RNAi Products for gene knock-down (CDK4) | |  | Millipore RNAi Products for the Analysis of CDK4 Gene knock-down | |  | Abnova Chimera RNAi Products for Gene knock-down (CDK4) |                OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_000075
Sigma-Aldrich siRNA and siRNA Panels for CDK4  Sigma-Aldrich shRNA Panels and shRNA for CDK4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_000075 REFSEQ mRNAs for CDK4 gene: NM_000075.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000075               OriGene GFP tagged cDNA clone in CMV expression vector: NM_000075                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_000075                                  untagged cDNA clones in CMV expression vector (see all 5): NM_000075  Additional cDNA sequence: AK297901.1 AK310724.1 AK313701.1 BC003644.2 BC005864.2 BC010153.2 BC015669.2 CR407668.1 CR542247.1 CR590586.1 CR591116.1 CR594194.1 CR597992.1 CR598582.1 CR602761.1 CR602927.1 CR608247.1 CR609991.1 CR616342.1 CR622282.1 M14505.1 U79269.1 Z48970.1 24/25 DOTS entries (see all 25
): DT.219465 DT.100851448 DT.92408932 DT.40113477 DT.100851457 DT.95222712 DT.97856917 DT.100851439 DT.121198842 DT.121198896 DT.95284131 DT.97789050 DT.121198761 DT.91928527 DT.100716609 DT.121198886 DT.40118681 DT.445603 DT.91772477 DT.91921800 DT.95339064 DT.95339068 DT.95339116 DT.97860433 24/974 AceView cDNA sequences (see all 974
):BU850002 AW298172 BF222951 BE905374 BM472703 BU165914 CB143270 CB160114 AI264566 BE383376 AW411404 AI674577 BI255420 AA356998 AI567341 BU943900 CR597992 BQ681906 F04615 BM458189 BQ232036 BU520905 AU104590 AA235586
highest scoring ESTs for CDK4:AA315694 AA338741 AA339057 AA362679 AL546134 AL602986 AU117043 AW246398 AW410442 AW411404 Unigene Cluster for CDK4: Cyclin-dependent kinase 4 Hs.95577 [show with all ESTs]Unigene Representative Sequence: BM467999
GeneLoc Exon Structure
5/9 Alternative Splicing Database (ASD) splice patterns (SP) for CDK4 (see all 9
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | · | 1e | ^ | 2a | · | 2b | · | 2c | · | 2d | ^ | 3 | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | ^ | 8a | · | 8b | ^ | 9a | · | 9b | |
| SP1: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CDK4
2 Ensembl transcripts including schematic representations: ENST00000312990
ENST00000257904
|
Expression for CDK4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CDK4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CDK4
1 / 2 / 3 3 probe-sets matching CDK4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GAAGGAAGAA
SOURCE GeneReport for Unigene cluster: Hs.95577
Expression variation in blood from EXPOLDB for CDK4 |
Orthologs for CDK4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CDK4 gene from 5/10 species (see all 10
)
About this table Species with no ortholog for CDK4
ENSEMBL Gene Tree for CDK4 | Paralogs for CDK4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CDK4 gene
- CDK62 CCRK2 CDK72
Pseudogenes
- 1 related pseudogene
|
SNPs/Variants for CDK4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CDK4 (up to first 250kb)
|
Disorders & Mutations for CDK4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 123829 disorders: 609048 UniProtKB/Swiss-Prot: CDK4_HUMAN, P11802
CDK4 mutations are involved in tumor formation Defects in CDK4 are the cause of cutaneous malignant melanoma 3 (CMM3) [MIM:609048, 155600]. Malignant melanoma is a malignant neoplasm of melanocytes, arising de novo or from a preexisting benign nevus, which occurs most often in the skin but also may involve other sites10/95 Novoseek disease relationships for CDK4 gene (see all 95
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| retinoblastoma |
91.78 |
183 |
10493518 (2), 9103470 (2), 7585516 (2), 9488660 (2) (see all 99) |
| liposarcoma dedifferentiated |
76.79 |
14 |
15221942 (4), 18214854 (2), 12640106 (1), 18204431 (1) (see all 9) |
| tumors |
70.74 |
362 |
17139501 (5), 9703873 (5), 16160477 (5), 12163365 (4) (see all 99) |
| melanoma |
70.33 |
227 |
8746340 (5), 9036865 (5), 9311594 (5), 17505264 (4) (see all 99) |
| liposarcoma |
67.48 |
20 |
14694526 (4), 18820664 (3), 9713346 (2), 12640106 (1) (see all 11) |
| cancer |
67.30 |
115 |
11756559 (4), 10398121 (3), 14648178 (2), 17481885 (2) (see all 85) |
| multiple tumors |
62.68 |
18 |
8821952 (2), 9827724 (1), 10094876 (1), 7744694 (1) (see all 17) |
| glioblastoma |
61.99 |
34 |
8806696 (4), 8811128 (4), 9600204 (3), 8586464 (2) (see all 14) |
| anaplastic astrocytoma |
60.11 |
3 |
7987821 (1), 16319692 (1), 9161727 (1) |
| glioma |
56.33 |
30 |
7585516 (3), 9815774 (3), 7954404 (2), 10587703 (2) (see all 19) |
About this table
Human Gene Mutation Database: CDK4 Genetic Association Database: CDK4 Human Genome Epidemiology Navigator: CDK4 (30 documents) Tumor Gene Database: CDK4
|
Medical News for CDK4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CDK4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/1329 PubMed articles for CDK4 gene (see all 1329
):- Prevalence of p16 and CDK4 germline mutations in 48 melanoma-prone families in France. (PubMed id 9425228)1, 3, 4 Soufir N.... Bressac-De Paillerets B. (1998)
- Complete scanning of the CDK4 gene by denaturing gradient gel electrophoresis: a novel missense mutation but low overall frequency of mutations in sporadic metastatic malignant melanoma. (PubMed id 9311594)1, 3, 4 Guldberg P....Zeuthen J. (1997)
- Chromosomal mapping of human CDK2, CDK4, and CDK5 cell cycle kinase genes. (PubMed id 8275715)1, 2, 3 Demetrick D.J....Beach D.H. (1994)
- Coamplification of the CDK4 gene with MDM2 and GLI in human sarcomas. (PubMed id 8221695)1, 3, 4 Khatib Z.A....Look A.T. (1993)
- Studies of variations of the cyclin-dependent kinase inhibitor 1C and the cyclin-dependent kinase 4 genes in relation to type 2 diabetes mellitus and related quantitative traits. (PubMed id 15821902)1, 3, 6 Nielsen E.M....Pedersen O. (2005)
- Role of the CDKN2A locus in patients with multiple primary melanomas. (PubMed id 15860862)1, 3, 6 Puig S....Mila M. (2005)
- Absence of mutations in the CDKN2 binding site of CDK4 in childhood acute lymphoblastic leukemia. (PubMed id 11426564)1, 3, 6 Einsiedel H.G....Seeger K. (2001)
- Germline mutations in the p16INK4a binding domain of CDK4 in familial melanoma. (PubMed id 8528263)1, 3, 4 Zuo L.... Dracopoli N.C. (1996)
- A p16INK4a-insensitive CDK4 mutant targeted by cytolytic T lymphocytes in a human melanoma. (PubMed id 7652577)1, 3, 4 Wolfel T.... Beach D. (1995)
- Characterization of VIK-1: a new Vav-interacting Kruppel-like protein. (PubMed id 15558030)3, 4 Houlard M....Varin-Blank N. (2005)
|
Search for CDK4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CDK4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CDK4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CDK4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for CDK4 | Genetics and Cytogenetics in Oncology and Haematology | | GeneReviews | http://www.genetests.org/query?gene=CDK4 | | NIEHS-SNPs | http://egp.gs.washington.edu/data/cdk4/ |
|
| | | About This Section
| --
| Services for CDK4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CDK4:

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Incremental update: 13 Oct 2009
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