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Aliases for CDK2AP1 Gene

Aliases for CDK2AP1 Gene

  • Cyclin Dependent Kinase 2 Associated Protein 1 2 3 5
  • CDK2-Associated Protein 1 2 3 4
  • Putative Oral Cancer Suppressor 3 4
  • Deleted In Oral Cancer 1 3 4
  • Doc-1 3 4
  • DOC1 3 4
  • Cyclin-Dependent Kinase 2-Associated Protein 1 3
  • Deleted In Oral Cancer-1 3
  • P12DOC-1 3
  • CDKAP1 4
  • DORC1 3
  • ST19 3

External Ids for CDK2AP1 Gene

Previous GeneCards Identifiers for CDK2AP1 Gene

  • GC12P122351
  • GC12M123446
  • GC12M123553
  • GC12M122183
  • GC12M122270
  • GC12M123745
  • GC12M120706

Summaries for CDK2AP1 Gene

Entrez Gene Summary for CDK2AP1 Gene

  • The protein encoded by this gene is a cyclin-dependent kinase 2 (CDK2) -associated protein which is thought to negatively regulate CDK2 activity by sequestering monomeric CDK2, and targeting CDK2 for proteolysis. This protein was found to also interact with DNA polymerase alpha/primase and mediate the phosphorylation of the large p180 subunit, which suggests a regulatory role in DNA replication during the S-phase of the cell cycle. This protein also forms a core subunit of the nucleosome remodeling and histone deacetylation (NURD) complex that epigenetically regulates embryonic stem cell differentiation. This gene thus plays a role in both cell-cycle and epigenetic regulation. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2012]

GeneCards Summary for CDK2AP1 Gene

CDK2AP1 (Cyclin Dependent Kinase 2 Associated Protein 1) is a Protein Coding gene. Diseases associated with CDK2AP1 include Oral Cancer. GO annotations related to this gene include DNA polymerase binding. An important paralog of this gene is CDK2AP2.

UniProtKB/Swiss-Prot for CDK2AP1 Gene

  • specific inhibitor of the cell-cycle kinase CDK2.

Gene Wiki entry for CDK2AP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDK2AP1 Gene

Genomics for CDK2AP1 Gene

Regulatory Elements for CDK2AP1 Gene

Enhancers for CDK2AP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F123139 1.7 FANTOM5 Ensembl ENCODE 34 +130.4 130378 5.3 ARID4B FEZF1 DMAP1 YY1 SLC30A9 GLIS2 FOS SP3 PPARG KAT8 CDK2AP1 VPS37B ENSG00000256092 ENSG00000256028 OGFOD2 ABCB9 ARL6IP4 MPHOSPH9 HIP1R C12orf65
GH12F123129 1.4 FANTOM5 Ensembl ENCODE 34 +139.3 139250 7.0 TBP ARID4B SIN3A RAD21 FOS ZNF680 ZNF654 GLIS1 ZNF580 ZBTB33 CDK2AP1 MPHOSPH9 EIF2B1 ENSG00000256092 ENSG00000235423 GTF2H3 DENR VPS37B C12orf65 ABCB9
GH12F123231 1.2 ENCODE 33.9 +38.8 38818 3.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC EIF2B1 CDK2AP1 ZCCHC8 LOC101927415 ENSG00000235423 MPHOSPH9 C12orf65 TCTN2 KNTC1 ENSG00000256092
GH12F123147 1.4 Ensembl ENCODE 28.1 +122.5 122536 5.0 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 CDK2AP1 EIF2B1 MPHOSPH9 TMED2 ZCCHC8 ENSG00000256092 LOC101927415 ENSG00000235423 GTF2H3 KNTC1
GH12F123105 1.2 Ensembl ENCODE 32.4 +165.2 165221 5.4 TBP HDAC1 PKNOX1 ZBTB40 RAD21 RARA ZNF121 GLIS2 ELK1 CREM PITPNM2 CDK2AP1 MPHOSPH9 C12orf65 LOC101927415 ABCB9 EIF2B1 ENSG00000280381 GC12P123128
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDK2AP1 on UCSC Golden Path with GeneCards custom track

Promoters for CDK2AP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for CDK2AP1 Gene

123,260,970 bp from pter
123,272,334 bp from pter
11,365 bases
Minus strand

Genomic View for CDK2AP1 Gene

Genes around CDK2AP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDK2AP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDK2AP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDK2AP1 Gene

Proteins for CDK2AP1 Gene

  • Protein details for CDK2AP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Cyclin-dependent kinase 2-associated protein 1
    Protein Accession:
    Secondary Accessions:
    • F5GYA4

    Protein attributes for CDK2AP1 Gene

    115 amino acids
    Molecular mass:
    12365 Da
    Quaternary structure:
    • Homodimer. Interacts with monomeric unphosphorylated CDK2.

    Three dimensional structures from OCA and Proteopedia for CDK2AP1 Gene

    Alternative splice isoforms for CDK2AP1 Gene


neXtProt entry for CDK2AP1 Gene

Post-translational modifications for CDK2AP1 Gene

Antibody Products

  • Cloud-Clone Corp. Antibodies for CDK2AP1

No data available for DME Specific Peptides for CDK2AP1 Gene

Domains & Families for CDK2AP1 Gene

Protein Domains for CDK2AP1 Gene

Suggested Antigen Peptide Sequences for CDK2AP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Belongs to the CDK2AP family.
  • Belongs to the CDK2AP family.
genes like me logo Genes that share domains with CDK2AP1: view

No data available for Gene Families for CDK2AP1 Gene

Function for CDK2AP1 Gene

Molecular function for CDK2AP1 Gene

UniProtKB/Swiss-Prot Function:
specific inhibitor of the cell-cycle kinase CDK2.

Gene Ontology (GO) - Molecular Function for CDK2AP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 21516116
GO:0070182 DNA polymerase binding IPI 9506968
genes like me logo Genes that share ontologies with CDK2AP1: view
genes like me logo Genes that share phenotypes with CDK2AP1: view

Animal Models for CDK2AP1 Gene

MGI Knock Outs for CDK2AP1:

Animal Model Products

miRNA for CDK2AP1 Gene

miRTarBase miRNAs that target CDK2AP1

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CDK2AP1 Gene

Localization for CDK2AP1 Gene

Subcellular locations from

Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CDK2AP1 gene
Compartment Confidence
nucleus 5
cytosol 5
mitochondrion 3

Gene Ontology (GO) - Cellular Components for CDK2AP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 9506968
GO:0048471 perinuclear region of cytoplasm IDA 9506968
genes like me logo Genes that share ontologies with CDK2AP1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CDK2AP1 Gene

Pathways & Interactions for CDK2AP1 Gene

SuperPathways for CDK2AP1 Gene

No Data Available

Pathways by source for CDK2AP1 Gene

1 GeneTex pathway for CDK2AP1 Gene

Gene Ontology (GO) - Biological Process for CDK2AP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001934 positive regulation of protein phosphorylation IDA 9506968
GO:0006261 DNA-dependent DNA replication NAS 9506968
GO:0007049 cell cycle IEA --
genes like me logo Genes that share ontologies with CDK2AP1: view

No data available for SIGNOR curated interactions for CDK2AP1 Gene

Transcripts for CDK2AP1 Gene

Unigene Clusters for CDK2AP1 Gene

Cyclin-dependent kinase 2 associated protein 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for CDK2AP1 Gene

No ASD Table

Relevant External Links for CDK2AP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for CDK2AP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for CDK2AP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CDK2AP1 Gene

This gene is overexpressed in Fetal ovary (50.5) and Peripheral blood mononuclear cells (13.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CDK2AP1 Gene

Protein tissue co-expression partners for CDK2AP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of CDK2AP1 Gene:


SOURCE GeneReport for Unigene cluster for CDK2AP1 Gene:

genes like me logo Genes that share expression patterns with CDK2AP1: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for CDK2AP1 Gene

Orthologs for CDK2AP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for CDK2AP1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia CDK2AP1 34 35
  • 99.32 (n)
(Mus musculus)
Mammalia Gm12184 35
  • 98 (a)
Cdk2ap1 34 16 35
  • 87.72 (n)
(Canis familiaris)
Mammalia CDK2AP1 34 35
  • 90.72 (n)
(Monodelphis domestica)
Mammalia CDK2AP1 35
  • 90 (a)
(Bos Taurus)
Mammalia CDK2AP1 34 35
  • 89.86 (n)
(Rattus norvegicus)
Mammalia Cdk2ap1 34
  • 88.6 (n)
(Ornithorhynchus anatinus)
Mammalia CDK2AP1 35
  • 87 (a)
(Gallus gallus)
Aves CDK2AP1 34 35
  • 77.97 (n)
(Anolis carolinensis)
Reptilia CDK2AP1 35
  • 91 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia cdk2ap1 34
  • 73.33 (n)
Str.6181 34
African clawed frog
(Xenopus laevis)
Amphibia cdk2ap1-prov 34
(Danio rerio)
Actinopterygii LOC100535265 34
  • 71.65 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG18292 35
  • 19 (a)
Species where no ortholog for CDK2AP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDK2AP1 Gene

Gene Tree for CDK2AP1 (if available)
Gene Tree for CDK2AP1 (if available)

Paralogs for CDK2AP1 Gene

Paralogs for CDK2AP1 Gene

(2) SIMAP similar genes for CDK2AP1 Gene using alignment to 2 proteins: Pseudogenes for CDK2AP1 Gene

genes like me logo Genes that share paralogs with CDK2AP1: view

Variants for CDK2AP1 Gene

Sequence variations from dbSNP and Humsavar for CDK2AP1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10083067 -- 123,267,716(+) CTATG(C/T)GCTCA intron-variant
rs10773002 -- 123,262,414(+) ATTCT(A/T)TTCCT intron-variant
rs10846490 -- 123,266,447(+) TTGGC(A/G)AGGAA intron-variant
rs10846491 -- 123,268,945(+) GGCTC(C/G)AGGGC intron-variant, upstream-variant-2KB
rs10846492 -- 123,273,765(+) GAGGC(C/G)GAGGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CDK2AP1 Gene

Variant ID Type Subtype PubMed ID
nsv826532 CNV gain 20364138
nsv1070138 CNV deletion 25765185
dgv884n106 CNV deletion 24896259

Variation tolerance for CDK2AP1 Gene

Residual Variation Intolerance Score: 58.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.25; 5.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CDK2AP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CDK2AP1 Gene

Disorders for CDK2AP1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CDK2AP1 Gene - From: Novoseek and GeneCards

Disorder Aliases PubMed IDs
oral cancer
  • malignant neoplasm of mouth
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CDK2AP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with CDK2AP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CDK2AP1 Gene

Publications for CDK2AP1 Gene

  1. Cloning, mapping, expression, function, and mutation analyses of the human ortholog of the hamster putative tumor suppressor gene Doc-1. (PMID: 9506968) Tsuji T. … Wong D.T. (J. Biol. Chem. 1998) 2 3 4 22 64
  2. Isolation, mapping and mutation analysis of a human cDNA homologous to the doc-1 gene of the Chinese hamster, a candidate tumor suppressor for oral cancer. (PMID: 9331572) Daigo Y. … Nakamura Y. (Genes Chromosomes Cancer 1997) 2 3 4 64
  3. Human cyclin-dependent kinase 2-associated protein 1 (CDK2AP1) is dimeric in its disulfide-reduced state, with natively disordered N- terminal region. (PMID: 22427660) Ertekin A. … Montelione G.T. (J. Biol. Chem. 2012) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Differential expression of DOC-1 in microsatellite-unstable human colorectal cancer. (PMID: 13679870) Yuan Z. … Weber T.K. (Oncogene 2003) 3 22 64

Products for CDK2AP1 Gene

Sources for CDK2AP1 Gene

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