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Aliases for CDIPT-AS1 Gene

Subcategory (RNA class) for CDIPT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDIPT-AS1 Gene

  • CDIPT Antisense RNA 1 (Head To Head) 2 3 5
  • CDIPT Antisense RNA 1 4
  • CTD-2574D22.5 3
  • T-ENOL 4

External Ids for CDIPT-AS1 Gene

Previous GeneCards Identifiers for CDIPT-AS1 Gene

  • GC16P029874
  • GC16P029877
  • GC16P029887
  • GC16P029897
  • GC16P029906

Summaries for CDIPT-AS1 Gene

GeneCards Summary for CDIPT-AS1 Gene

CDIPT-AS1 (CDIPT Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CDIPT-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDIPT-AS1 Gene

Genomics for CDIPT-AS1 Gene

Regulatory Elements for CDIPT-AS1 Gene

Enhancers for CDIPT-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H029862 1.2 ENCODE 28 -0.5 -471 2 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SRCAP SPNS1 INO80E ENSG00000260853 NFATC2IP PRR14 ENSG00000260367 SMG1P5 CDIPT-AS1 SMG1P2
GH16H029898 1.1 ENCODE 26.1 +37.0 36955 3 PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 ZNF785 ENSG00000260114 SRCAP SMG1P5 MIR762HG SMG1P2 INO80E SPNS1 TAOK2 CDIPT-AS1
GH16H029828 1.2 Ensembl ENCODE 18.9 -33.6 -33564 3 ELF3 FOXA2 MLX ARID4B DMAP1 BMI1 DNMT3B ZSCAN9 RARA YY1 CDIPT-AS1 CDIPT C16orf92 FAM57B DOC2A TMEM219 INO80E HIRIP3 C16orf54 ZNF689
GH16H029942 1.7 FANTOM5 Ensembl ENCODE 11.7 +80.4 80390 3 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 ZBTB7B ZNF766 INO80E SRCAP ENSG00000260853 NPIPB12 SPNS1 NFATC2IP ENSG00000260367 ZNF785 SMG1P5 SMG1P2
GH16H029819 1.5 FANTOM5 ENCODE dbSUPER 9.4 -40.7 -40679 7 HDGF PKNOX1 SIN3A YY1 GLIS2 ZNF143 FOS RUNX3 PAF1 SP3 ENSG00000261766 SH2B1 ZNF785 ENSG00000260114 DOC2A TAOK2 TMEM219 HIRIP3 INO80E C16orf92
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDIPT-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for CDIPT-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000085122 -593 1601 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for CDIPT-AS1 Gene

Chromosome:
16
Start:
29,863,593 bp from pter
End:
29,868,053 bp from pter
Size:
4,461 bases
Orientation:
Plus strand

Genomic View for CDIPT-AS1 Gene

Genes around CDIPT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDIPT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDIPT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDIPT-AS1 Gene

Proteins for CDIPT-AS1 Gene

  • Protein details for CDIPT-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DO92-ENOL_HUMAN
    Recommended name:
    Putative protein T-ENOL
    Protein Accession:
    P0DO92

    Protein attributes for CDIPT-AS1 Gene

    Size:
    83 amino acids
    Molecular mass:
    9002 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDIPT-AS1 Gene

Post-translational modifications for CDIPT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDIPT-AS1 Gene

Domains & Families for CDIPT-AS1 Gene

Protein Domains for CDIPT-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CDIPT-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDIPT-AS1 Gene

Function for CDIPT-AS1 Gene

Phenotypes From GWAS Catalog for CDIPT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDIPT-AS1 Gene

Localization for CDIPT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDIPT-AS1 Gene

Pathways & Interactions for CDIPT-AS1 Gene

SuperPathways for CDIPT-AS1 Gene

No Data Available

Interacting Proteins for CDIPT-AS1 Gene

Selected Interacting proteins: P0DO92-ENOL_HUMAN for CDIPT-AS1 Gene via UniProtKB

Symbol External ID(s) Details
PRKAR1A

Gene Ontology (GO) - Biological Process for CDIPT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDIPT-AS1 Gene

Drugs & Compounds for CDIPT-AS1 Gene

No Compound Related Data Available

Transcripts for CDIPT-AS1 Gene

mRNA/cDNA for CDIPT-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CDIPT-AS1 Gene

No ASD Table

Relevant External Links for CDIPT-AS1 Gene

GeneLoc Exon Structure for
CDIPT-AS1
ECgene alternative splicing isoforms for
CDIPT-AS1

Expression for CDIPT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDIPT-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDIPT-AS1 Gene

This gene is overexpressed in Testis (x41.1).
genes like me logo Genes that share expression patterns with CDIPT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDIPT-AS1 Gene

Orthologs for CDIPT-AS1 Gene

Evolution for CDIPT-AS1 Gene

ENSEMBL:
Gene Tree for CDIPT-AS1 (if available)
TreeFam:
Gene Tree for CDIPT-AS1 (if available)

No data available for Orthologs for CDIPT-AS1 Gene

Paralogs for CDIPT-AS1 Gene

No data available for Paralogs for CDIPT-AS1 Gene

Variants for CDIPT-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDIPT-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000186798 -- 29,866,385(+) GCAAG(A/G)TAAGA intron-variant
rs1000219324 -- 29,866,670(+) AAGTT(A/T)AAAAA intron-variant
rs1000556536 -- 29,863,854(+) TTTAT(A/G)GCGTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1002426899 -- 29,864,478(+) AGCCA(C/T)GGGCC intron-variant, upstream-variant-2KB
rs1003247056 -- 29,862,917(+) AGCCC(C/G)GCAGC upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for CDIPT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3638373 CNV loss 21293372
nsv457482 CNV loss 19166990
nsv571818 CNV loss 21841781

Relevant External Links for CDIPT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDIPT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for CDIPT-AS1 Gene

Disorders for CDIPT-AS1 Gene

Relevant External Links for CDIPT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDIPT-AS1

No disorders were found for CDIPT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDIPT-AS1 Gene

Publications for CDIPT-AS1 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 60
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for CDIPT-AS1 Gene

Sources for CDIPT-AS1 Gene

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