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Aliases for CDIPT-AS1 Gene

Subcategory (RNA class) for CDIPT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDIPT-AS1 Gene

  • CDIPT Antisense RNA 1 (Head To Head) 2 3
  • Putative Uncharacterized Protein LOC440356 3
  • CTD-2574D22.5 3

External Ids for CDIPT-AS1 Gene

Summaries for CDIPT-AS1 Gene

GeneCards Summary for CDIPT-AS1 Gene

CDIPT-AS1 (CDIPT Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDIPT-AS1 Gene

Genomics for CDIPT-AS1 Gene

Genomic Location for CDIPT-AS1 Gene

Chromosome:
16
Start:
29,863,593 bp from pter
End:
29,868,053 bp from pter
Size:
4,461 bases
Orientation:
Plus strand

Genomic View for CDIPT-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDIPT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDIPT-AS1 Gene

No data available for Regulatory Elements for CDIPT-AS1 Gene

Proteins for CDIPT-AS1 Gene

Post-translational modifications for CDIPT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDIPT-AS1 Gene

Domains & Families for CDIPT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDIPT-AS1 Gene

Function for CDIPT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDIPT-AS1 Gene

Localization for CDIPT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for CDIPT-AS1 Gene

Pathways & Interactions for CDIPT-AS1 Gene

SuperPathways for CDIPT-AS1 Gene

No Data Available

Interacting Proteins for CDIPT-AS1 Gene

Gene Ontology (GO) - Biological Process for CDIPT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDIPT-AS1 Gene

Drugs & Compounds for CDIPT-AS1 Gene

No Compound Related Data Available

Transcripts for CDIPT-AS1 Gene

mRNA/cDNA for CDIPT-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for CDIPT-AS1 Gene

No ASD Table

Relevant External Links for CDIPT-AS1 Gene

GeneLoc Exon Structure for
CDIPT-AS1
ECgene alternative splicing isoforms for
CDIPT-AS1

Expression for CDIPT-AS1 Gene

mRNA expression in normal human tissues for CDIPT-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDIPT-AS1 Gene

This gene is overexpressed in Testis (x41.1).
genes like me logo Genes that share expression patterns with CDIPT-AS1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for CDIPT-AS1 Gene

Orthologs for CDIPT-AS1 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for CDIPT-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia D830044I16Rik 16
Species with no ortholog for CDIPT-AS1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for CDIPT-AS1 Gene

ENSEMBL:
Gene Tree for CDIPT-AS1 (if available)
TreeFam:
Gene Tree for CDIPT-AS1 (if available)

Paralogs for CDIPT-AS1 Gene

No data available for Paralogs for CDIPT-AS1 Gene

Variants for CDIPT-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDIPT-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs4474709 -- 29,866,840(-) TTTTT(A/T)AAATT intron-variant
rs4787482 -- 29,866,928(+) aaggc(G/T)ggtgg intron-variant
rs7190671 -- 29,865,717(+) GAGCT(G/T)Cttct intron-variant
rs7198022 -- 29,867,147(+) ttagc(C/T)gggtt intron-variant
rs9924348 -- 29,866,228(+) aaTAA(A/T)TTTCC intron-variant

Relevant External Links for CDIPT-AS1 Gene

HapMap Linkage Disequilibrium report
CDIPT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDIPT-AS1 Gene

Disorders for CDIPT-AS1 Gene

Relevant External Links for CDIPT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDIPT-AS1
genes like me logo Genes that share disorders with CDIPT-AS1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDIPT-AS1 Gene

Publications for CDIPT-AS1 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 67
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for CDIPT-AS1 Gene

Sources for CDIPT-AS1 Gene

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