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Aliases & Descriptions for CDH3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CDHP 1, 2, 3, 5 | | HJMD 2, 5 | | P-cadherin 3 | | PCAD 1, 2, 5 |
| | | Descriptions |
|---|
| Placental cadherin 3 | | cadherin 3, P-cadherin (placental) 1 | | cadherin 3, type 1 2 | | cadherin 3, type 1, P-cadherin (placental) 2 | | calcium-dependent adhesion protein, placental 2 |
|
| | Search outside databases for aliases for CDH3 genePrevious GC identifers: GC16P059362 GC16P069056 GC16P068414 GC16P068454 |
Summaries for CDH3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CDH3: This gene is a classical cadherin from the cadherin superfamily. The encoded protein is a calcium-dependent cell-cell adhesion glycoprotein comprised of five extracellular cadherin repeats, a transmembrane region and a highly conserved cytoplasmic tail. This gene is located in a six-cadherin cluster in a region on the long arm of chromosome 16 that is involved in loss of heterozygosity events in breast and prostate cancer. In addition, aberrant expression of this protein is observed in cervical adenocarcinomas. Mutations in this gene have been associated with congential hypotrichosis with juvenile macular dystrophy. [provided by RefSeq] UniProtKB/Swiss-Prot: CADH3_HUMAN, P22223Function: Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell typesGene Wiki entry for CDH3 |
Genomic Location for CDH3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CDH3 gene 
Entrez Gene cytogenetic band: 16q22.1 Ensembl cytogenetic band: 16q22.1 HGNC cytogenetic band: 16q22.1CDH3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P067236:
(about GC identifiers)
Start:
|
67,236,240 bp from pter |
End:
|
67,290,443 bp from pter |
Size:
|
54,204 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000016.8 NT_010498.15
| Proteins for CDH3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CADH3_HUMAN, P22223 (See
protein sequence)Recommended Name: Cadherin-3 precursor Size: 829 amino acids; 91418 Da
Subunit: Interacts with CDCP1
Subcellular location: Cell membrane; Single-pass type I membrane protein
Secondary accessions: Q05DI6Alternative splicing: 2 isoforms: P22223-1 P22223-2 Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001784.2
ENSEMBL proteins: ENSP00000264012
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005886 | plasma membrane |
IEA | -- | | GO:0005913 | cell-cell adherens junction |
IEA | -- | | GO:0016021 | integral to membrane |
IEA | -- | About this table
Antibodies for CDH3: Assays for CDH3: | Protein
Domains/ Families for CDH3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P22223
ProtoNet protein and cluster: P22223 2 Blocks protein families: IPB000233 Cadherin cytoplasmic region IPB002126 Cadherin
UniProtKB/Swiss-Prot: CADH3_HUMAN, P22223Similarity: Contains 5 cadherin domains | Gene Function for CDH3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001793
Applied Biosystems Silencer® siRNAs for CDH3
Sigma-Aldrich siRNA and siRNA Panels for CDH3  Sigma-Aldrich shRNA Panels and shRNA for CDH3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001793                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001793                                  untagged cDNA clone in CMV expression vector: NM_001793 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001793
UniProtKB/Swiss-Prot: CADH3_HUMAN, P22223Function: Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell typesGenatlas biochemistry entry for CDH3:cadherin 3,P-cadherin,placental,transmembrane glycoprotein component of adherens junction,expressed in placenta,forming a complex with the catenin that is loss in poorly differentiated esophageal squamous carcinoma2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Cdh3):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005509 | calcium ion binding |
IEA | -- | | GO:0005515 | protein binding |
IEA | -- | About this table | Pathways & Interactions for CDH3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for CDH3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CDH3 
3 Gene Ontology (GO) biological process terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007156 | homophilic cell adhesion |
IEA | -- | | GO:0007601 | visual perception |
IEA | -- | | GO:0050896 | response to stimulus |
IEA | -- | About this table
|
Drugs & Compounds for CDH3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CDH3 4 Novoseek chemical compound relationships for CDH3 gene
About this table
|
Transcripts for CDH3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001793
Sigma-Aldrich siRNA and siRNA Panels for CDH3  Sigma-Aldrich shRNA Panels and shRNA for CDH3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001793 REFSEQ mRNAs for CDH3 gene: NM_001793.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001793               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001793                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001793                                  untagged cDNA clone in CMV expression vector: NM_001793  Additional cDNA sequence: AK225396.1 AK296968.1 AK312554.1 BC014462.1 BC041846.1 X63629.1 12 DOTS entries: DT.113659 DT.100779495 DT.100779494 DT.91947365 DT.97780589 DT.120665526 DT.120665528 DT.120665631 DT.75102866 DT.92033387 DT.95080929 DT.95258646 24/160 AceView cDNA sequences (see all 160
):NM_001793 BQ928283 CA489338 AW473194 BM045728 CB996355 CA489124 CF593464 BG319601 BF915077 CA455046 C00249 BM766222 BQ676796 CB997053 BU543746 AL040609 CA454360 CB992509 BU168948 CA489357 BG538137 BM923882 BE378969
highest scoring ESTs for CDH3:X63629 AA425217 AA535113 AA551779 AA551993 AA555159 AA632236 AA774611 AA836945 AI149268 Unigene Cluster for CDH3: Cadherin 3, type 1, P-cadherin (placental) Hs.191842 [show with all ESTs]Unigene Representative Sequence: NM_001793
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for CDH3
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9a | · | 9b | ^ | 10 | ^ | 11 | ^ | 12a | · | 12b | · | 12c | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CDH3
1 Ensembl transcript including schematic representation: ENST00000264012
|
Expression for CDH3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CDH3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CDH3
1 / 2 / 3 4 probe-sets matching CDH3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TACGGTGGCG
SOURCE GeneReport for Unigene cluster: Hs.191842
Expression variation in blood from EXPOLDB for CDH3 UniProtKB/Swiss-Prot: CADH3_HUMAN, P22223Tissue specificity: Expressed in some normal epithelial tissues and in some carcinoma cell lines |
Orthologs for CDH3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CDH3 gene from 5/7 species (see all 7
)
| Organism |
Gene |
Locus |
Description |
Human Similarity |
NCBI accessions |
dog (Canis familiaris) |
CDH31 |
-- |
cadherin 3, type 1, P-cadherin (placental) |
86.23(n) 87.68(a) |
611010 XM_848616.1 XP_853709.1 |
chimpanzee (Pan troglodytes) |
CDH151 |
-- |
cadherin 15, type 1, M-cadherin (myotubule) |
99.4(n) 99.4(a) |
454192 XM_001167934.1 XP_001167934.1 |
cow (Bos taurus) |
CDH31 |
-- |
cadherin 3, type 1, P-cadherin (placental) |
83.88(n) 83.33(a) |
281063 XM_614683.3 XP_614683.3 |
rat (Rattus norvegicus) |
Cdh31 |
-- |
cadherin 3, type 1, P-cadherin (placental) |
82.87(n) 84.25(a) |
116777 XM_226426.4 XP_226426.4 |
mouse (Mus musculus) |
Cdh31, 5 |
8 (53.30 cM)5
|
cadherin 31, 5 |
82.5(n)1 83.27(a)1 |
125601 NM_001037809.21 NP_001032898.11 AI3855385 AK0312655 (see all 13) |
About this table Species with no ortholog for CDH3
ENSEMBL Gene Tree for CDH3 | Paralogs for CDH3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CDH3 gene
- CDH12
|
SNPs/Variants for CDH3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CDH3 (up to first 250kb)
|
Disorders & Mutations for CDH3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 114021 disorders: 601553 225280 UniProtKB/Swiss-Prot: CADH3_HUMAN, P22223
Defects in CDH3 are the cause of hypotrichosis with juvenile macular dystrophy (HJMD) [MIM:601553]. HJMD is a rare autosomal recessive disorder characterized by early hair loss heralding severe degenerative changes of the retinal macula and culminating in blindness during the second to third decade of life Defects in CDH3 are the cause of ectodermal dysplasia with ectrodactyly and macular dystrophy (EEM) [MIM:225280]; also known as EEM syndrome, Albrectsen-Svendsen syndrome or Ohdo-Hirayama-Terawaki syndrome. Ectodermal dysplasia defines a heterogeneous group of disorders due to abnormal development of two or more ectodermal structures. EEM is an autosomal recessive condition characterized by features of ectodermal dysplasia such as sparse eyebrows and scalp hair, and selective tooth agenesis associated with macular dystrophy and ectrodactyly10/56 Novoseek disease relationships for CDH3 gene (see all 56
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| breast carcinoma |
68.94 |
30 |
10506713 (4), 14645693 (3), 12608656 (3), 16115928 (3) (see all 21) |
| carcinoma lobular |
58.62 |
5 |
7534041 (1), 14645693 (1), 11921707 (1), 10506713 (1) (see all 5) |
| darier disease |
57.99 |
3 |
11401672 (1), 15206690 (1) |
| carcinoma |
55.79 |
29 |
14645693 (5), 7743525 (3), 9842964 (2), 10492037 (2) (see all 18) |
| carcinoma ductal |
54.79 |
9 |
7534041 (2), 11942571 (2), 11454996 (1), 12608656 (1) (see all 7) |
| breast cancer |
54.11 |
51 |
15930334 (7), 18811693 (5), 18001487 (4), 15548699 (3) (see all 24) |
| pemphigus vulgaris |
48.37 |
1 |
10771476 (1) |
| hailey-hailey disease |
47.84 |
1 |
11401672 (1) |
| tumors |
47.43 |
74 |
15051772 (3), 16115928 (3), 16361544 (3), 8902651 (2) (see all 44) |
| carcinoma medullary |
45.93 |
2 |
10492037 (2) |
About this table
Human Gene Mutation Database: CDH3
|
Medical News for CDH3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CDH3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/247 PubMed articles for CDH3 gene (see all 247
):- A missense mutation in CDH3, encoding P-cadherin, causes hypotrichosis with juvenile macular dystrophy. (PubMed id 12445216)1, 3, 4 Indelman M.... Sprecher E. (2002)
- Hypotrichosis with juvenile macular dystrophy is caused by a mutation in CDH3, encoding P-cadherin. (PubMed id 11544476)1, 3, 4 Sprecher E....Szargel R. (2001)
- P-cadherin is a basal cell-specific epithelial marker that is not expressed in prostate cancer. (PubMed id 9815605)1, 3, 4 Jarrard D.F.... Isaacs W.B. (1997)
- Adhesion signaling by a novel mitotic substrate of src kinases. (PubMed id 16007225)3, 4 Bhatt A.S.... Moasser M.M. (2005)
- Distinct CDH3 mutations cause ectodermal dysplasia, ectrodactyly, macular dystrophy (EEM syndrome). (PubMed id 15805154)3, 4 Kjaer K.W.... Rosenberg T. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The gene for the cell adhesion molecule M-cadherin maps to mouse chromosome 8 and human chromosome 16q24.1-qter and is near the E-cadherin (uvomorulin) locus in both species. (PubMed id 1427864)2, 3 Kaupmann K....Starzinski-Powitz A. (1992)
- Molecular cloning of a human Ca2+-dependent cell-cell adhesion molecule homologous to mouse placental cadherin: its low expression in human placental tissues. (PubMed id 2793940)3, 4 Shimoyama Y....Hirohashi S. (1989)
- Cadherin cell-adhesion molecules in human epithelial tissues and carcinomas. (PubMed id 2702654)3, 4 Shimoyama Y.... Abe O. (1989)
- P-cadherin expression and survival rate in oral squamous cell carcinoma: an immunohistochemical study. (PubMed id 15967043)1, 3 Lo Muzio L....Carinci F. (2005)
|
Search for CDH3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CDH3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CDH3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CDH3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| ATLAS Chromosomes in Cancer entry for CDH3 | Genetics and Cytogenetics in Oncology and Haematology | | Mutations of the CDH3 gene | http://www.retina-international.com/sci-news/cdh3mut.htm | | GeneReviews | http://www.genetests.org/query?gene=CDH3 |
|
| | | About This Section
| --
| Services for CDH3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CDH3:

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