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Aliases for CDH23-AS1 Gene

Subcategory (RNA class) for CDH23-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for CDH23-AS1 Gene

  • CDH23 Antisense RNA 1 2 3 5
  • CDH23 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 10 Open Reading Frame 106 2
  • Non-Protein Coding RNA 223 2
  • NCRNA00223 3
  • BA327E2.3 3
  • C10orf106 3

External Ids for CDH23-AS1 Gene

Previous HGNC Symbols for CDH23-AS1 Gene

  • C10orf106
  • NCRNA00223

Previous GeneCards Identifiers for CDH23-AS1 Gene

  • GC10U901556
  • GC10M073269

Summaries for CDH23-AS1 Gene

GeneCards Summary for CDH23-AS1 Gene

CDH23-AS1 (CDH23 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for CDH23-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDH23-AS1 Gene

Genomics for CDH23-AS1 Gene

Regulatory Elements for CDH23-AS1 Gene

Enhancers for CDH23-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H072326 2.1 FANTOM5 Ensembl ENCODE dbSUPER 14.6 -820.3 -820328 11 HDGF FOXA2 PKNOX1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B DNAJB12 ENSG00000227540 HMGN2P34 CDH23-AS1 DNAJC9 ECD ENSG00000272599 DDIT4 PSAP P4HA1
GH10H072270 1.5 ENCODE dbSUPER 14.6 -762.8 -762847 8 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZC3H11A PPARGC1A ECD DNAJB12 ENSG00000227540 FAM149B1 RPL17P50 DNAJC9 ENSG00000272630 ASCC1 HMGN2P34 CDH23-AS1
GH10H072352 1.4 ENCODE dbSUPER 14.6 -842.3 -842320 2 FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 ZC3H11A MEF2D SSRP1 ZNF610 DNAJB12 ECD EIF4A2P2 ENSG00000227540 HMGN2P34 CDH23-AS1 ENSG00000272599 CHST3 ANAPC16 RPL17P50
GH10H071631 0.8 ENCODE 25 -119.8 -119783 0 BCOR CTCF KLF17 FEZF1 NFXL1 ZIC2 ZNF121 CTBP1 ZBTB48 PATZ1 CDH23-AS1 LOC105378349 SLC29A3 GC10P071695 LOC105378355
GH10H071265 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +242.8 242830 7 HDGF PKNOX1 FEZF1 ZNF2 ZNF143 FOS ZNF548 SP3 REST ZNF592 UNC5B UNC5B-AS1 SLC29A3 CDH23-AS1 CDH23 PCBD1 PIR34735 PIR59347
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CDH23-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CDH23-AS1 Gene

Chromosome:
10
Start:
71,508,153 bp from pter
End:
71,511,920 bp from pter
Size:
3,768 bases
Orientation:
Minus strand

Genomic View for CDH23-AS1 Gene

Genes around CDH23-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CDH23-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CDH23-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDH23-AS1 Gene

Proteins for CDH23-AS1 Gene

Post-translational modifications for CDH23-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for CDH23-AS1 Gene

Domains & Families for CDH23-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for CDH23-AS1 Gene

Function for CDH23-AS1 Gene

Phenotypes From GWAS Catalog for CDH23-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CDH23-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for CDH23-AS1 Gene

Localization for CDH23-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for CDH23-AS1 Gene

Pathways & Interactions for CDH23-AS1 Gene

SuperPathways for CDH23-AS1 Gene

No Data Available

Interacting Proteins for CDH23-AS1 Gene

Gene Ontology (GO) - Biological Process for CDH23-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for CDH23-AS1 Gene

Drugs & Compounds for CDH23-AS1 Gene

No Compound Related Data Available

Transcripts for CDH23-AS1 Gene

mRNA/cDNA for CDH23-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for CDH23-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CDH23-AS1 Gene

No ASD Table

Relevant External Links for CDH23-AS1 Gene

GeneLoc Exon Structure for
CDH23-AS1
ECgene alternative splicing isoforms for
CDH23-AS1

Expression for CDH23-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CDH23-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for CDH23-AS1 Gene

This gene is overexpressed in Testis (x53.0).
genes like me logo Genes that share expression patterns with CDH23-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for CDH23-AS1 Gene

Orthologs for CDH23-AS1 Gene

Evolution for CDH23-AS1 Gene

ENSEMBL:
Gene Tree for CDH23-AS1 (if available)
TreeFam:
Gene Tree for CDH23-AS1 (if available)

No data available for Orthologs for CDH23-AS1 Gene

Paralogs for CDH23-AS1 Gene

No data available for Paralogs for CDH23-AS1 Gene

Variants for CDH23-AS1 Gene

Sequence variations from dbSNP and Humsavar for CDH23-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs794727649 Pathogenic 71,510,080(+) ACTCC(A/G)GGTTC intron-variant, upstream-variant-2KB, splice-acceptor-variant
rs796051861 Pathogenic 71,510,129(+) ACCCC(-/C)TGGTG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs3802719 Likely benign 71,511,225(-) AACCC(C/T)AGTGG intron-variant, upstream-variant-2KB
rs3802720 Likely benign 71,511,149(-) TCCCC(A/G)ACCTG intron-variant, nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs727505270 Likely benign 71,511,221(+) GGAGC(A/C)ACTGG intron-variant, upstream-variant-2KB

Relevant External Links for CDH23-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CDH23-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for CDH23-AS1 Gene

Disorders for CDH23-AS1 Gene

Relevant External Links for CDH23-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CDH23-AS1

No disorders were found for CDH23-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CDH23-AS1 Gene

Publications for CDH23-AS1 Gene

No publications were found for CDH23-AS1 Gene.

Products for CDH23-AS1 Gene

Sources for CDH23-AS1 Gene

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