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Aliases & Descriptions for CDH2
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD325 1, 2 | | CDHN 1, 2, 3 | | CDw325 2, 3 | | N-cadherin 3 | | NCAD 2, 3, 5 |
| | | Descriptions |
|---|
| CD325 antigen 3 | | N-cadherin 1 2 | | Neural cadherin 2, 3 | | cadherin 2, N-cadherin (neuronal) 2 | | cadherin 2, type 1 2 | | cadherin 2, type 1, N-cadherin (neuronal) 2 | | calcium-dependent adhesion protein, neuronal 2 |
|
| | Search outside databases for aliases for CDH2 genePrevious GC identifers: GC18M025465 GC18M025261 GC18M023782 |
Summaries for CDH2(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for CDH2: This gene is a classical cadherin from the cadherin superfamily. The encoded protein is a calcium dependent cell-cell adhesion glycoprotein comprised of five extracellular cadherin repeats, a transmembrane region and a highly conserved cytoplasmic tail. The protein functions during gastrulation and is required for establishment of left-right asymmetry. At certain central nervous system synapses, presynaptic to postsynaptic adhesion is mediated at least in part by this gene product. [provided by RefSeq] UniProtKB/Swiss-Prot: CADH2_HUMAN, P19022Function: Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. CDH2 may be involved in neuronal recognition mechanismGene Wiki entry for CDH2 |
Genomic Location for CDH2
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the CDH2 gene 
Entrez Gene cytogenetic band: 18q11.2 Ensembl cytogenetic band: 18q12.1 HGNC cytogenetic band: 18q12.1CDH2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure GeneLoc location for GC18M023784:
(about GC identifiers)
Start:
|
23,784,933 bp from pter |
End:
|
24,011,189 bp from pter |
Size:
|
226,257 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000018.8 NT_010966.13
| Proteins for CDH2
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: CADH2_HUMAN, P19022 (See
protein sequence)Recommended Name: Cadherin-2 precursor Size: 906 amino acids; 99809 Da
Subunit: Interacts with CDCP1
Subcellular location: Cell membrane; Single-pass type I membrane protein
Secondary accessions: Q14923 Q8N173Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_001783.2
ENSEMBL proteins: ENSP00000382312 ENSP00000269141
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for CDH2:  | Invitrogen Antibodies for CDH2 |  | Millipore Mono- and Polyclonal Antibodies for the study of CDH2 |  | Sigma-Aldrich Antibody Arrays and Antibodies for CDH2 |  | R&D Systems Antibodies for CDH2 (N-Cadherin) |  | Cell Signaling Technology (CST) Antibodies for CDH2  (N-Cadherin) |  | Antibodies from Abcam (pan Cadherin, N Cadherin), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (CDH2) |  | Novus Biologicals Antibodies for CDH2 |
Assays for CDH2: | Protein
Domains/ Families for CDH2(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P19022
ProtoNet protein and cluster: P19022 3 Blocks protein families: IPB000233 Cadherin cytoplasmic region IPB002126 Cadherin IPB009124 Desmocollin signature
UniProtKB/Swiss-Prot: CADH2_HUMAN, P19022Similarity: Contains 5 cadherin domains | Gene Function for CDH2
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001792
Applied Biosystems Silencer® siRNAs for CDH2
Sigma-Aldrich siRNA and siRNA Panels for CDH2  Sigma-Aldrich shRNA Panels and shRNA for CDH2  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_001792                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001792                                  untagged cDNA clone in CMV expression vector: NM_001792 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001792
UniProtKB/Swiss-Prot: CADH2_HUMAN, P19022Function: Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. CDH2 may be involved in neuronal recognition mechanismGenatlas biochemistry entry for CDH2:cadherin 2,N-cadherin,transmembrane glycoproteincomponent of adherens junction,containing a CCG repeat in 5'utr,transmembrane glycoprotein component of adherens junction,expressed in brain,putatively involved in synaptic adhesion,axon outgrowth and guidance,also expressed in muscle8 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Cdh2):
2 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005509 | calcium ion binding |
IEA | -- | | GO:0005515 | protein binding |
IEA | -- | About this table | Pathways & Interactions for CDH2
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
2 Sigma-Aldrich "Your Favorite Gene" Pathways for CDH2 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for CDH2 
5/21 Interacting proteins for CDH2 (ENSP000002691413 P190221, 2) via UniProtKB, MINT, and/or STRING (see all 21
)About this table
5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
): About this table
|
Drugs & Compounds for CDH2(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for CDH2 10/22 Novoseek chemical compound relationships for CDH2 gene (see all 22
)
About this table
|
Transcripts for CDH2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_001792
Sigma-Aldrich siRNA and siRNA Panels for CDH2  Sigma-Aldrich shRNA Panels and shRNA for CDH2  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_001792 REFSEQ mRNAs for CDH2 gene: NM_001792.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001792               OriGene GFP tagged cDNA clone in CMV expression vector: NM_001792                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_001792                                  untagged cDNA clone in CMV expression vector: NM_001792  Additional cDNA sequence: AK129728.1 AK302831.1 BC021695.1 BC036470.1 BX648579.1 M34064.1 S42303.1 X54315.1 X57548.1 5 DOTS entries: DT.414612 DT.92433029 DT.95273907 DT.65288085 DT.121096711 24/137 AceView cDNA sequences (see all 137
):C04763 CK724900 AL041311 AI064969 AA653561 BQ772138 AV705261 BM693820 BE464612 AI611780 BM966740 BM670881 AU132015 AA410423 AI127140 W49619 CK725209 BM893528 BG197310 BX955043 AL046467 AI675151 AU120201 AA661623
highest scoring ESTs for CDH2:AL046467 BC036470 BI460696 BI461974 BI547033 BI549642 M34064 S42303 X54315 AA069613 Unigene Cluster for CDH2: Cadherin 2, type 1, N-cadherin (neuronal) Hs.464829 [show with all ESTs]Unigene Representative Sequence: NM_001792
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for CDH2 (see all 7
)
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7 | ^ | 8a | · | 8b | · | 8c | ^ | 9a | · | 9b | · | 9c | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 | |
| SP1: | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for CDH2
2 Ensembl transcripts including schematic representations: ENST00000399380
ENST00000269141
|
Expression for CDH2
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| CDH2 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for CDH2
1 / 2 / 3 6 probe-sets matching CDH2 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTCTCATCCC
SOURCE GeneReport for Unigene cluster: Hs.464829
Expression variation in blood from EXPOLDB for CDH2 |
Orthologs for CDH2
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for CDH2 gene from 5/9 species (see all 9
)
About this table Species with no ortholog for CDH2
ENSEMBL Gene Tree for CDH2 | Paralogs for CDH2(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for CDH2 gene
- CDH42 CDH132 CDH152
|
SNPs/Variants for CDH2(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for CDH2 (up to first 250kb)
|
Disorders & Mutations for CDH2
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 114020
10/75 Novoseek disease relationships for CDH2 gene (see all 75
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| metastasis |
51.13 |
49 |
19360298 (6), 12508543 (5), 12569568 (2), 15217949 (2) (see all 25) |
| epithelial tumor |
51.08 |
4 |
9191009 (1), 15262114 (1), 16258702 (1), 16596172 (1) |
| malignant mesothelioma |
49.50 |
5 |
10849094 (2), 14595746 (1), 15717748 (1), 12194995 (1) |
| tumors |
48.24 |
159 |
16675571 (7), 9191009 (5), 18622386 (4), 17564818 (4) (see all 77) |
| melanoma |
44.58 |
88 |
17668445 (6), 16371504 (5), 16784991 (5), 15316281 (4) (see all 34) |
| ovarian carcinoma |
43.32 |
6 |
11684957 (1), 17266044 (1), 16788982 (1), 18930836 (1) (see all 5) |
| mesothelioma |
42.36 |
20 |
14506634 (4), 8522310 (2), 15717748 (2), 9190996 (2) (see all 9) |
| pleural malignant mesothelioma |
39.42 |
10 |
10227598 (4), 8522310 (3), 9190996 (1) |
| carcinoma |
34.81 |
30 |
14645693 (3), 16258702 (3), 11684957 (2), 9269828 (1) (see all 22) |
| carcinoma neuroendocrine |
30.12 |
2 |
18269586 (2) |
About this table
Human Genome Epidemiology Navigator: CDH2 (2 documents)
|
Medical News for CDH2(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for CDH2 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/599 PubMed articles for CDH2 gene (see all 599
):- N-cadherin gene maps to human chromosome 18 and is not linked to the E-cadherin gene. (PubMed id 2384753)1, 2, 3, 4 Walsh F.S....Goodfellow P.N. (1990)
- Human N-cadherin: nucleotide and deduced amino acid sequence. (PubMed id 2216790)2, 3, 4 Reid R.A. and Hemperly J.J. (1990)
- Adhesion signaling by a novel mitotic substrate of src kinases. (PubMed id 16007225)3, 4 Bhatt A.S.... Moasser M.M. (2005)
- Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). (PubMed id 16212419)3, 4 Amanchy R.... Pandey A. (2005)
- Expressed cadherin pseudogenes are localized to the critical region of the spinal muscular atrophy gene. (PubMed id 7731968)2, 3 Selig S....Kunkel L.M. (1995)
- Structure of the human N-cadherin gene: YAC analysis and fine chromosomal mapping to 18q11.2. (PubMed id 7959764)3, 4 Wallis J.A.... Walsh F.S. (1994)
- Extrajunctional distribution of N-cadherin in cultured human endothelial cells. (PubMed id 1500442)3, 4 Salomon D.... Geiger B. (1992)
- Differential localization of VE- and N-cadherins in human endothelial cells: VE-cadherin competes with N-cadherin for junctional localization. (PubMed id 9508779)1, 3 Navarro P....Dejana E. (1998)
- N-cadherin serves as diagnostic biomarker in intrahepatic and perihilar cholangiocarcinomas. (PubMed id 18622386)1, 3 Mosnier J.F....Laboisse C.L. (2009)
- N-cadherin levels in endothelial cells are regulated by monolayer maturity and p120 availability. (PubMed id 18979298)1, 3 Ferreri D.M....Vincent P.A. (2008)
|
Search for CDH2
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing CDH2
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing CDH2
(According to HUGE)
About This Section
| -- |
Specialized Databases showing CDH2(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for CDH2(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for CDH2:

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| Antibodies & Assays for CDH2  (N-Cadherin) |
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Incremental update: 13 Oct 2009
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