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Aliases for CDH17 Gene

Aliases for CDH17 Gene

  • Cadherin 17, LI Cadherin (Liver-Intestine) 2 3
  • Intestinal Peptide-Associated Transporter HPT-1 3 4
  • Liver-Intestine Cadherin 3 4
  • LI-Cadherin 3 4
  • CDH16 3 6
  • HPT1 3 6
  • Human Intestinal Peptide-Associated Transporter HPT-1 3
  • Human Peptide Transporter 1 3
  • HPT-1 Cadherin 3
  • LI Cadherin 3
  • Cadherin-16 3
  • Cadherin-17 3
  • HPT-1 3

External Ids for CDH17 Gene

Summaries for CDH17 Gene

Entrez Gene Summary for CDH17 Gene

  • This gene is a member of the cadherin superfamily, genes encoding calcium-dependent, membrane-associated glycoproteins. The encoded protein is cadherin-like, consisting of an extracellular region, containing 7 cadherin domains, and a transmembrane region but lacking the conserved cytoplasmic domain. The protein is a component of the gastrointestinal tract and pancreatic ducts, acting as an intestinal proton-dependent peptide transporter in the first step in oral absorption of many medically important peptide-based drugs. The protein may also play a role in the morphological organization of liver and intestine. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2009]

GeneCards Summary for CDH17 Gene

CDH17 (Cadherin 17, LI Cadherin (Liver-Intestine)) is a Protein Coding gene. Among its related pathways are ERK Signaling and ERK Signaling. GO annotations related to this gene include calcium ion binding and proton-dependent oligopeptide secondary active transmembrane transporter activity. An important paralog of this gene is CDH16.

UniProtKB/Swiss-Prot for CDH17 Gene

  • Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. LI-cadherin may have a role in the morphological organization of liver and intestine. Involved in intestinal peptide transport.

Gene Wiki entry for CDH17 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CDH17 Gene

Genomics for CDH17 Gene

Genomic Location for CDH17 Gene

Start:
94,127,166 bp from pter
End:
94,217,303 bp from pter
Size:
90,138 bases
Orientation:
Minus strand

Genomic View for CDH17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for CDH17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CDH17 Gene

Regulatory Elements for CDH17 Gene

Transcription factor binding sites by QIAGEN in the CDH17 gene promoter:

Proteins for CDH17 Gene

  • Protein details for CDH17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12864-CAD17_HUMAN
    Recommended name:
    Cadherin-17
    Protein Accession:
    Q12864
    Secondary Accessions:
    • Q15336
    • Q2M2E0

    Protein attributes for CDH17 Gene

    Size:
    832 amino acids
    Molecular mass:
    92219 Da
    Quaternary structure:
    No Data Available

neXtProt entry for CDH17 Gene

Proteomics data for CDH17 Gene at MOPED

Post-translational modifications for CDH17 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn149, Asn184, Asn250, Asn419, Asn456, Asn546, Asn587, and Asn722

Other Protein References for CDH17 Gene

No data available for DME Specific Peptides for CDH17 Gene

Domains for CDH17 Gene

Gene Families for CDH17 Gene

HGNC:
  • MCDH :Cadherins / Major cadherins

Protein Domains for CDH17 Gene

InterPro:
Blocks:
ProtoNet:

UniProtKB/Swiss-Prot:

CAD17_HUMAN
Domain:
  • Three calcium ions are usually bound at the interface of each cadherin domain and rigidify the connections, imparting a strong curvature to the full-length ectodomain.:
    • Q12864
  • Contains 7 cadherin domains.:
    • Q12864
genes like me logo Genes that share domains with CDH17: view

Function for CDH17 Gene

Molecular function for CDH17 Gene

GENATLAS Biochemistry: cadherin 17,LI-cadherin,transmembrane glycoprotein component of adherens junction,expressed in the liver and intestine located in a region deleted (LOH) in adult acute leukemia
UniProtKB/Swiss-Prot Function: Cadherins are calcium-dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. LI-cadherin may have a role in the morphological organization of liver and intestine. Involved in intestinal peptide transport.

Gene Ontology (GO) - Molecular Function for CDH17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity TAS 8153632
GO:0005427 proton-dependent oligopeptide secondary active transmembrane transporter activity ISS --
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with CDH17: view

Phenotypes for CDH17 Gene

genes like me logo Genes that share phenotypes with CDH17: view

Animal Models for CDH17 Gene

MGI Knock Outs for CDH17:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for CDH17 Gene

Localization for CDH17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CDH17 Gene

Cell membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CDH17 Gene COMPARTMENTS Subcellular localization image for CDH17 gene
Compartment Confidence
plasma membrane 5
cytosol 3
nucleus 3
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for CDH17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane --
GO:0016021 integral component of membrane IEA --
GO:0016323 basolateral plasma membrane IDA 15279905
genes like me logo Genes that share ontologies with CDH17: view

Pathways for CDH17 Gene

genes like me logo Genes that share pathways with CDH17: view

Pathways by source for CDH17 Gene

Interacting Proteins for CDH17 Gene

Gene Ontology (GO) - Biological Process for CDH17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport NAS 8153632
GO:0006857 oligopeptide transport ISS --
GO:0007155 cell adhesion TAS 8153632
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules ISS --
GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules ISS --
genes like me logo Genes that share ontologies with CDH17: view

Compounds for CDH17 Gene

(1) HMDB Compounds for CDH17 Gene

Compound Synonyms Cas Number PubMed IDs
Calcium
  • Ca
7440-70-2

(1) Novoseek inferred chemical compound relationships for CDH17 Gene

Compound -log(P) Hits PubMed IDs
valacyclovir 60 1
genes like me logo Genes that share compounds with CDH17: view

Transcripts for CDH17 Gene

Unigene Clusters for CDH17 Gene

Cadherin 17, LI cadherin (liver-intestine):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CDH17 Gene

No ASD Table

Relevant External Links for CDH17 Gene

GeneLoc Exon Structure for
CDH17
ECgene alternative splicing isoforms for
CDH17

Expression for CDH17 Gene

mRNA expression in normal human tissues for CDH17 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CDH17 Gene

This gene is overexpressed in Colon - Transverse (35.4) and Small Intestine - Terminal Ileum (15.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for CDH17 Gene

SOURCE GeneReport for Unigene cluster for CDH17 Gene Hs.591853

mRNA Expression by UniProt/SwissProt for CDH17 Gene

Q12864-CAD17_HUMAN
Tissue specificity: Expressed in the gastrointestinal tract and pancreatic duct. Not detected in kidney, lung, liver, brain, adrenal gland and skin.
genes like me logo Genes that share expressions with CDH17: view

Orthologs for CDH17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CDH17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CDH17 36
  • 99 (n)
  • 98.32 (a)
CDH17 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia CDH17 36
  • 82.25 (n)
  • 78 (a)
CDH17 37
  • 78 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CDH17 36
  • 82.99 (n)
  • 78.82 (a)
CDH17 37
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cdh17 36
  • 81.14 (n)
  • 79.44 (a)
Cdh17 16
Cdh17 37
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia CDH17 37
  • 65 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia CDH17 37
  • 60 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cdh17 36
  • 81.14 (n)
  • 79.08 (a)
chicken
(Gallus gallus)
Aves CDH17 36
  • 58.39 (n)
  • 49.63 (a)
CDH17 37
  • 48 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CDH17 37
  • 49 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cdh17 36
  • 55.53 (n)
  • 51.2 (a)
zebrafish
(Danio rerio)
Actinopterygii -- 36
cdh17 36
  • 49.75 (n)
  • 39.55 (a)
cdh17 37
  • 35 (a)
OneToOne
Species with no ortholog for CDH17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CDH17 Gene

ENSEMBL:
Gene Tree for CDH17 (if available)
TreeFam:
Gene Tree for CDH17 (if available)

Paralogs for CDH17 Gene

Paralogs for CDH17 Gene

Selected SIMAP similar genes for CDH17 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with CDH17: view

Variants for CDH17 Gene

Sequence variations from dbSNP and Humsavar for CDH17 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2157 -- 94,187,074(-) GTGAG(C/T)GAACA intron-variant
rs2158 -- 94,187,036(-) AGTAC(A/T)CAAAA intron-variant
rs9417 -- 94,127,538(-) AAAAA(A/C)GTGAG utr-variant-3-prime
rs16912 -- 94,176,355(+) ataca(C/T)agtgc intron-variant
rs723360 -- 94,209,156(+) TTTTC(C/T)CCCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CDH17 Gene

Variant ID Type Subtype PubMed ID
nsv6311 CNV Insertion 18451855
dgv465n21 CNV Gain 19592680
esv2660000 CNV Deletion 23128226
nsv831401 CNV Loss 17160897
nsv396169 CNV Loss 16902084

Relevant External Links for CDH17 Gene

HapMap Linkage Disequilibrium report
CDH17

Disorders for CDH17 Gene

(11) Novoseek inferred disease relationships for CDH17 Gene

Disease -log(P) Hits PubMed IDs
adenocarcinoma gastric 55.6 2
gastric carcinoma 55.1 16
gastric cancer 54 11
metaplasia 53.4 6
hepatocellular carcinoma 46.2 13

Relevant External Links for CDH17

Genetic Association Database (GAD)
CDH17
Human Genome Epidemiology (HuGE) Navigator
CDH17
genes like me logo Genes that share disorders with CDH17: view

No data available for UniProtKB/Swiss-Prot for CDH17 Gene

Publications for CDH17 Gene

  1. Intestinal cell adhesion molecules. Liver-intestine cadherin. (PMID: 11193569) Gessner R. … Tauber R. (Ann. N. Y. Acad. Sci. 2000) 3 23
  2. LI-cadherin: a marker of gastric metaplasia and neoplasia. (PMID: 11413113) GrAPtzinger C. … Gessner R. (Gut 2001) 3 23
  3. Expression of liver-intestine cadherin and its possible interaction with galectin-3 in ductal adenocarcinoma of the pancreas. (PMID: 12824888) Takamura M. … Hirohashi S. (Cancer Sci. 2003) 3 23
  4. Overexpression of LI-cadherin in gastric cancer is associated with lymph node metastasis. (PMID: 15178443) Ko S. … Wong J. (Biochem. Biophys. Res. Commun. 2004) 3 23
  5. Reduced expression of liver-intestine cadherin is associated with progression and lymph node metastasis of human colorectal carcinoma. (PMID: 15279905) Takamura M. … Aoyagi Y. (Cancer Lett. 2004) 3 23

Products for CDH17 Gene

Sources for CDH17 Gene

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